Wall clock time and date at job start Tue Mar 31 2020 22:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30586 * 1 3 3 Si 1.86807 * 119.99895 * 2 1 4 4 H 1.48497 * 109.47294 * 274.63262 * 3 2 1 5 5 H 1.48497 * 109.47042 * 34.63598 * 3 2 1 6 6 H 1.48503 * 109.46730 * 154.63466 * 3 2 1 7 7 C 1.40352 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00103 * 196.30995 * 7 2 1 9 9 C 1.40177 * 120.00004 * 16.30594 * 7 2 1 10 10 C 1.39069 * 119.74464 * 204.09500 * 9 7 2 11 11 C 1.42020 * 118.74229 * 180.24874 * 10 9 7 12 12 N 1.32219 * 120.83097 * 179.75517 * 11 10 9 13 13 C 1.46504 * 119.99914 * 179.71949 * 12 11 10 14 14 C 1.56995 * 120.49636 * 247.06850 * 13 12 11 15 15 C 1.53000 * 59.75938 * 248.95292 * 14 13 12 16 16 H 1.09009 * 119.53665 * 112.46983 * 15 14 13 17 17 C 1.54384 * 118.12333 * 267.56881 * 15 14 13 18 18 N 1.48143 * 104.61897 * 89.20519 * 17 15 14 19 19 C 1.34783 * 127.83896 * 140.41212 * 18 17 15 20 20 O 1.21691 * 120.00012 * 179.97438 * 19 18 17 21 21 C 1.46654 * 119.99556 * 0.02562 * 19 18 17 22 22 C 1.36552 * 125.98304 * 180.02562 * 21 19 18 23 23 C 1.40369 * 106.70385 * 179.97438 * 22 21 19 24 24 C 1.35122 * 107.11882 * 359.97438 * 23 22 21 25 25 O 1.33940 * 108.76828 * 359.75590 * 24 23 22 26 26 C 1.48141 * 104.32610 * 320.41725 * 18 17 15 27 27 C 1.46914 * 118.33501 * 359.47979 * 11 10 9 28 28 C 1.34377 * 119.36890 * 0.24983 * 27 11 10 29 29 N 1.36426 * 121.21708 * 0.02562 * 28 27 11 30 30 H 0.97002 * 119.08132 * 179.97438 * 29 28 27 31 31 H 0.97006 * 119.99892 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.62553 * 359.97438 * 10 9 7 33 33 H 1.08997 * 118.42090 * 142.02851 * 14 13 12 34 34 H 1.09001 * 116.94703 * 356.53747 * 14 13 12 35 35 H 1.09003 * 110.40901 * 330.42312 * 17 15 14 36 36 H 1.09007 * 110.40695 * 207.99113 * 17 15 14 37 37 H 1.07998 * 126.64847 * 359.97438 * 22 21 19 38 38 H 1.07998 * 126.43921 * 179.97438 * 23 22 21 39 39 H 1.07993 * 125.62177 * 180.02562 * 24 23 22 40 40 H 1.08997 * 110.41308 * 158.36844 * 26 18 17 41 41 H 1.09004 * 110.40948 * 280.68145 * 26 18 17 42 42 H 1.08001 * 120.31386 * 180.27901 * 27 11 10 43 43 H 1.07995 * 119.39082 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.3894 2.1031 -1.3955 5 1 1.4897 2.6224 0.7957 6 1 3.5830 1.4139 0.5998 7 6 2.0076 -1.2155 -0.0005 8 1 3.0550 -1.2345 0.2621 9 6 1.3490 -2.4049 -0.3419 10 6 1.8403 -3.6220 0.1176 11 6 1.1594 -4.8143 -0.2455 12 7 1.5933 -5.9941 0.1644 13 6 0.8733 -7.2120 -0.2160 14 6 0.1270 -8.0678 0.8681 15 6 1.3799 -8.6159 0.1820 16 1 2.2925 -8.7554 0.7617 17 6 1.1972 -9.4799 -1.0843 18 7 1.2030 -8.5092 -2.2033 19 6 1.7782 -8.6469 -3.4144 20 8 1.6933 -7.7512 -4.2338 21 6 2.5054 -9.8768 -3.7451 22 6 3.1318 -10.1449 -4.9285 23 6 3.6934 -11.4255 -4.8066 24 6 3.3896 -11.8770 -3.5698 25 8 2.6785 -10.9387 -2.9312 26 6 0.4332 -7.3526 -1.6892 27 6 -0.0426 -4.7034 -1.0829 28 6 -0.4577 -3.4894 -1.4824 29 7 0.2167 -2.3586 -1.1252 30 1 -0.1102 -1.4982 -1.4314 31 1 -0.4850 0.8401 0.0004 32 1 2.7255 -3.6602 0.7353 33 1 -0.8289 -8.5202 0.6042 34 1 0.2226 -7.7443 1.9046 35 1 0.2466 -10.0119 -1.0476 36 1 2.0237 -10.1833 -1.1870 37 1 3.1849 -9.4971 -5.7910 38 1 4.2616 -11.9512 -5.5597 39 1 3.6768 -12.8347 -3.1616 40 1 0.6831 -6.4508 -2.2482 41 1 -0.6369 -7.5514 -1.7488 42 1 -0.5876 -5.5891 -1.3742 43 1 -1.3415 -3.4075 -2.0976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163640649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:18 Heat of formation + Delta-G solvation = 54.796906 kcal Electronic energy + Delta-G solvation = -28373.593280 eV Core-core repulsion = 24386.368586 eV Total energy + Delta-G solvation = -3987.224694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.68681 -41.31308 -40.28249 -39.32132 -36.24683 -35.21722 -34.29736 -33.94748 -32.46323 -31.16812 -30.07553 -29.18730 -27.57656 -27.41536 -23.97890 -23.27816 -23.14431 -22.70963 -21.94144 -20.99239 -20.57551 -19.41882 -18.84658 -18.41017 -17.89736 -17.48370 -17.05791 -16.75142 -16.66584 -16.37876 -16.00886 -15.39064 -15.02341 -14.86202 -14.58987 -14.49908 -14.35780 -14.02782 -13.98566 -13.68256 -13.56571 -13.30280 -13.16289 -13.11682 -12.79146 -12.67691 -12.58200 -12.33845 -11.99269 -11.90521 -11.63893 -11.36673 -11.10735 -11.07824 -10.61649 -10.13434 -9.99526 -9.66256 -9.20744 -9.00322 -7.74226 -6.68945 -0.02200 0.90846 1.00891 1.39737 1.40256 1.49059 1.54061 1.57530 2.01038 2.01868 2.14302 2.43294 2.73311 2.90201 3.39116 3.51773 3.55245 3.69689 3.88970 3.93647 4.00845 4.08066 4.15411 4.29338 4.43502 4.51633 4.57044 4.65575 4.71939 4.82744 4.83441 4.90036 4.91603 4.96460 5.01967 5.07287 5.11802 5.17267 5.25657 5.40753 5.61145 5.79716 5.86052 5.95955 6.05646 6.31968 6.42300 6.48180 6.79976 6.96380 7.15314 7.90904 8.01418 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.002520 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.582077 B =11107.047306 C =11752.078519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.050 3.950 3 Si 0.996 3.004 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.323 3.677 10 C -0.401 4.401 11 C 0.273 3.727 12 N -0.663 5.663 13 C 0.017 3.983 14 C -0.124 4.124 15 C -0.167 4.167 16 H 0.105 0.895 17 C 0.134 3.866 18 N -0.614 5.614 19 C 0.608 3.392 20 O -0.571 6.571 21 C -0.105 4.105 22 C -0.125 4.125 23 C -0.231 4.231 24 C 0.011 3.989 25 O -0.167 6.167 26 C 0.124 3.876 27 C -0.315 4.315 28 C 0.132 3.868 29 N -0.600 5.600 30 H 0.418 0.582 31 H 0.307 0.693 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.155 0.845 38 H 0.188 0.812 39 H 0.260 0.740 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.140 0.860 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.369 -15.765 -6.028 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.169 4.169 3 Si 0.815 3.185 4 H -0.179 1.179 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.525 4.525 8 H 0.113 0.887 9 C 0.214 3.786 10 C -0.430 4.430 11 C 0.112 3.888 12 N -0.389 5.389 13 C -0.079 4.079 14 C -0.163 4.163 15 C -0.187 4.187 16 H 0.124 0.876 17 C 0.013 3.987 18 N -0.345 5.345 19 C 0.399 3.601 20 O -0.454 6.454 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.249 4.249 24 C -0.058 4.058 25 O -0.063 6.063 26 C 0.001 3.999 27 C -0.344 4.344 28 C 0.003 3.997 29 N -0.211 5.211 30 H 0.259 0.741 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.173 0.827 38 H 0.205 0.795 39 H 0.276 0.724 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.157 0.843 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.045 -15.683 -5.742 16.734 hybrid contribution -0.136 1.254 -0.465 1.345 sum -1.181 -14.429 -6.207 15.752 Atomic orbital electron populations 1.69324 1.08697 1.32729 1.33936 1.26929 0.95735 1.04769 0.89433 0.84950 0.78899 0.74698 0.79906 1.17898 1.18669 1.18742 1.19732 0.99098 0.90697 1.42968 0.88725 1.17737 0.82420 0.94167 0.84318 1.20139 1.10687 0.89846 1.22360 1.20310 0.88882 0.92201 0.87363 1.73111 1.32261 0.95774 1.37792 1.23412 1.02091 0.91670 0.90741 1.23820 0.95341 1.00208 0.96953 1.23703 0.99775 0.95698 0.99560 0.87643 1.22172 1.04339 0.90228 0.81928 1.49320 1.52042 1.19915 1.13180 1.16623 0.77960 0.84749 0.80780 1.90835 1.63140 1.41807 1.49578 1.21564 1.10872 0.90102 0.93150 1.22255 0.96910 0.98366 0.97057 1.22205 1.07206 0.95440 1.00058 1.25522 0.93410 0.94505 0.92376 1.84140 1.58196 1.23205 1.40719 1.22503 0.95207 0.88738 0.93498 1.22746 1.03142 0.97400 1.11149 1.21983 0.95829 0.86243 0.95630 1.42062 1.24967 1.09492 1.44555 0.74107 0.88114 0.89609 0.86310 0.89091 0.87846 0.87955 0.82699 0.79502 0.72432 0.91643 0.88925 0.84250 0.80000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -34.81 11.15 21.89 0.24 -34.56 16 2 C 0.05 2.13 5.18 85.39 0.44 2.57 16 3 Si 1.00 32.86 29.59 68.60 2.03 34.89 16 4 H -0.25 -8.02 7.11 99.48 0.71 -7.31 16 5 H -0.26 -8.17 7.11 99.48 0.71 -7.46 16 6 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 7 C -0.49 -24.22 9.03 23.26 0.21 -24.01 16 8 H 0.09 4.67 7.90 -2.91 -0.02 4.64 16 9 C 0.32 16.55 6.35 38.88 0.25 16.80 16 10 C -0.40 -22.12 9.83 23.41 0.23 -21.89 16 11 C 0.27 14.17 6.61 42.30 0.28 14.45 16 12 N -0.66 -33.88 11.00 -284.54 -3.13 -37.02 16 13 C 0.02 0.68 3.10 5.98 0.02 0.70 16 14 C -0.12 -3.88 10.29 32.00 0.33 -3.55 16 15 C -0.17 -5.43 7.00 -9.82 -0.07 -5.50 16 16 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 17 C 0.13 3.67 6.50 86.53 0.56 4.23 16 18 N -0.61 -21.55 3.32 -812.68 -2.70 -24.25 16 19 C 0.61 22.79 7.88 86.44 0.68 23.47 16 20 O -0.57 -25.61 17.13 -4.32 -0.07 -25.68 16 21 C -0.11 -3.10 6.98 24.07 0.17 -2.93 16 22 C -0.12 -3.10 10.62 22.39 0.24 -2.86 16 23 C -0.23 -3.66 10.87 22.07 0.24 -3.42 16 24 C 0.01 0.15 12.08 67.10 0.81 0.96 16 25 O -0.17 -3.74 7.80 -5.11 -0.04 -3.78 16 26 C 0.12 4.67 4.69 86.54 0.41 5.07 16 27 C -0.32 -13.78 7.98 23.66 0.19 -13.59 16 28 C 0.13 5.20 11.15 83.10 0.93 6.13 16 29 N -0.60 -26.55 4.88 -188.19 -0.92 -27.47 16 30 H 0.42 17.31 6.40 -92.71 -0.59 16.71 16 31 H 0.31 11.41 8.29 -92.70 -0.77 10.64 16 32 H 0.09 4.99 8.06 -2.91 -0.02 4.96 16 33 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.09 2.99 8.14 -2.39 -0.02 2.98 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.10 2.53 5.54 -2.38 -0.01 2.51 16 37 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 38 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.26 0.60 8.06 -2.91 -0.02 0.58 16 40 H 0.07 2.94 5.68 -2.39 -0.01 2.93 16 41 H 0.09 2.95 7.87 -2.38 -0.02 2.93 16 42 H 0.14 5.45 4.83 -2.91 -0.01 5.44 16 43 H 0.18 5.19 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -72.54 361.69 1.81 -70.73 By element: Atomic # 1 Polarization: 50.01 SS G_CDS: 0.48 Total: 50.49 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 5.91 Total: -3.36 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -6.50 Total: -123.29 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.11 Total: -29.46 kcal Atomic # 14 Polarization: 32.86 SS G_CDS: 2.03 Total: 34.89 kcal Total: -72.54 1.81 -70.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163640649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.529 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds