Wall clock time and date at job start Tue Mar 31 2020 22:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00408 * 2 1 4 4 H 1.48498 * 109.47321 * 270.00460 * 3 2 1 5 5 H 1.48503 * 109.46950 * 30.00301 * 3 2 1 6 6 H 1.48503 * 109.47234 * 149.99848 * 3 2 1 7 7 C 1.38953 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00382 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99674 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00091 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99866 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47044 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00139 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47364 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47213 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.46986 * 180.02562 * 16 15 14 18 18 C 1.34784 * 119.99741 * 180.02562 * 17 16 15 19 19 O 1.21281 * 120.00093 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.99865 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47110 * 179.97438 * 20 18 17 22 22 C 1.50706 * 109.47116 * 179.97438 * 21 20 18 23 23 C 1.33391 * 125.19937 * 90.00083 * 22 21 20 24 24 C 1.38423 * 114.92045 * 179.97438 * 23 22 21 25 25 C 1.33390 * 114.91979 * 359.97438 * 24 23 22 26 26 S 1.75878 * 125.20693 * 269.69344 * 22 21 20 27 27 H 0.97001 * 119.99738 * 359.97438 * 1 2 3 28 28 H 0.97009 * 120.00051 * 0.02562 * 9 7 2 29 29 H 1.08993 * 109.46934 * 59.99997 * 12 10 9 30 30 H 1.09004 * 109.46776 * 300.00204 * 12 10 9 31 31 H 1.00899 * 111.00382 * 303.95289 * 13 12 10 32 32 H 1.09008 * 109.46741 * 60.00031 * 14 13 12 33 33 H 1.09003 * 109.46886 * 300.00514 * 14 13 12 34 34 H 1.09005 * 109.46552 * 60.00359 * 15 14 13 35 35 H 1.08991 * 109.47305 * 300.00470 * 15 14 13 36 36 H 1.09000 * 109.47214 * 59.99786 * 16 15 14 37 37 H 1.09000 * 109.46955 * 300.00002 * 16 15 14 38 38 H 0.96998 * 120.00681 * 359.97438 * 17 16 15 39 39 H 1.09000 * 109.47543 * 59.99570 * 20 18 17 40 40 H 1.09008 * 109.47338 * 300.00084 * 20 18 17 41 41 H 1.09000 * 109.46884 * 60.00335 * 21 20 18 42 42 H 1.09000 * 109.46955 * 299.99651 * 21 20 18 43 43 H 1.07995 * 122.54106 * 359.95411 * 23 22 21 44 44 H 1.08001 * 122.53959 * 180.02562 * 24 23 22 45 45 H 1.07998 * 125.20163 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2435 -4.8630 -0.0010 13 7 2.1981 -5.9795 -0.0017 14 6 1.4978 -7.2709 -0.0006 15 6 2.5226 -8.4069 -0.0020 16 6 1.7932 -9.7518 -0.0015 17 7 2.7745 -10.8395 -0.0023 18 6 2.3592 -12.1218 -0.0025 19 8 1.1731 -12.3751 -0.0015 20 6 3.3686 -13.2407 -0.0039 21 6 2.6392 -14.5856 -0.0032 22 6 3.6487 -15.7046 -0.0052 23 6 4.1655 -16.2759 1.0838 24 6 5.0770 -17.2875 0.8350 25 6 5.3000 -17.5380 -0.4561 26 16 4.3199 -16.4621 -1.4436 27 1 -0.4850 0.8401 0.0004 28 1 0.3532 -2.3906 -0.0005 29 1 0.6159 -4.9204 -0.8902 30 1 0.6179 -4.9208 0.8897 31 1 2.8324 -5.9126 -0.7836 32 1 0.8719 -7.3455 -0.8899 33 1 0.8738 -7.3450 0.8901 34 1 3.1488 -8.3323 0.8871 35 1 3.1462 -8.3325 -0.8928 36 1 1.1672 -9.8260 -0.8907 37 1 1.1693 -9.8264 0.8892 38 1 3.7231 -10.6370 -0.0034 39 1 3.9944 -13.1667 0.8856 40 1 3.9928 -13.1659 -0.8944 41 1 2.0133 -14.6599 -0.8924 42 1 2.0154 -14.6601 0.8876 43 1 3.8936 -15.9720 2.0838 44 1 5.5696 -17.8331 1.6262 45 1 5.9761 -18.2893 -0.8367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175712046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:26 Heat of formation + Delta-G solvation = -56.472009 kcal Electronic energy + Delta-G solvation = -24360.404825 eV Core-core repulsion = 20503.799100 eV Total energy + Delta-G solvation = -3856.605725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10022 -38.38071 -38.29822 -36.62142 -34.92464 -34.12226 -33.84957 -31.58355 -31.14409 -29.31605 -27.20834 -25.65474 -24.58258 -23.34694 -22.62651 -21.75067 -20.52292 -19.68728 -19.22503 -17.93052 -17.82948 -16.93353 -16.55384 -16.32040 -16.00654 -15.79594 -15.64444 -14.91347 -14.52567 -14.49202 -14.15603 -13.91081 -13.64820 -13.48871 -13.42124 -13.21371 -12.92669 -12.66630 -12.50435 -12.38327 -12.06810 -11.85078 -11.80633 -11.51981 -11.47607 -11.44039 -11.11452 -11.09431 -10.95785 -10.39770 -10.23119 -10.20003 -9.51580 -9.37839 -9.09678 -8.92052 -8.48257 -8.08630 -7.96667 -6.42264 -3.83170 0.53706 1.18665 1.56430 2.28666 2.32118 2.84693 3.17459 3.26218 3.32204 3.90095 4.07092 4.17394 4.29520 4.46113 4.56530 4.62874 4.72501 4.79480 4.93206 5.02821 5.03335 5.10406 5.15717 5.17352 5.25390 5.33991 5.41328 5.48359 5.59917 5.60794 5.70524 5.78222 5.84912 5.94775 5.97307 6.01229 6.04803 6.14105 6.26056 7.15393 7.17824 7.54646 7.62939 7.89227 8.05690 8.60642 9.17236 9.53695 10.05051 10.75482 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.001148 C = 0.001133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.221854 B =24384.045772 C =24697.046403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.062 3.938 15 C -0.129 4.129 16 C 0.120 3.880 17 N -0.730 5.730 18 C 0.512 3.488 19 O -0.541 6.541 20 C -0.136 4.136 21 C -0.034 4.034 22 C -0.172 4.172 23 C -0.140 4.140 24 C -0.133 4.133 25 C -0.217 4.217 26 S 0.096 5.904 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.349 0.651 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.403 0.597 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.268 -33.889 -0.812 34.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.167 4.167 16 C -0.004 4.004 17 N -0.381 5.381 18 C 0.298 3.702 19 O -0.418 6.418 20 C -0.177 4.177 21 C -0.073 4.073 22 C -0.289 4.289 23 C -0.170 4.170 24 C -0.164 4.164 25 C -0.352 4.352 26 S 0.359 5.641 27 H 0.081 0.919 28 H 0.226 0.774 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.984 -33.688 -1.685 34.257 hybrid contribution 0.173 0.703 0.605 0.944 sum 6.156 -32.985 -1.080 33.572 Atomic orbital electron populations 1.69612 1.05953 1.28175 1.50551 1.25261 0.95625 0.99719 0.97279 0.85857 0.79263 0.80794 0.78371 1.20424 1.20904 1.19388 1.19712 0.93385 0.82250 1.47652 0.87915 1.41865 1.09214 1.04599 1.64297 1.19813 0.88386 0.84739 0.84509 1.90518 1.13769 1.87084 1.55484 1.21671 0.94335 0.90910 1.01296 1.60046 1.18975 0.99908 1.51272 1.21830 0.95329 0.88803 1.00824 1.21743 0.98974 0.92357 1.03659 1.21338 0.91380 0.85137 1.02579 1.46044 1.10704 1.05790 1.75609 1.20633 0.89927 0.83792 0.75845 1.90727 1.17793 1.83990 1.49324 1.21691 0.98203 0.92674 1.05103 1.19866 0.94211 0.88238 1.05018 1.24539 1.04933 1.03771 0.95699 1.20182 0.99285 0.98087 0.99476 1.20198 1.00220 0.99508 0.96448 1.25636 1.06759 1.05920 0.96901 1.84400 1.38754 1.31134 1.09774 0.91858 0.77436 0.93810 0.89540 0.83196 0.95255 0.90768 0.90107 0.91259 0.91432 0.91195 0.76324 0.88354 0.88606 0.89855 0.89016 0.84194 0.84295 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 10 C 0.44 10.38 7.82 -10.98 -0.09 10.30 16 11 O -0.58 -15.84 15.78 5.54 0.09 -15.75 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 13 N -0.67 -10.47 6.12 -115.06 -0.70 -11.18 16 14 C 0.06 0.71 5.69 -3.83 -0.02 0.69 16 15 C -0.13 -1.17 5.59 -26.73 -0.15 -1.31 16 16 C 0.12 1.05 5.67 -4.04 -0.02 1.03 16 17 N -0.73 -5.47 5.56 -60.30 -0.33 -5.81 16 18 C 0.51 4.54 7.83 -10.98 -0.09 4.46 16 19 O -0.54 -7.00 15.98 5.56 0.09 -6.91 16 20 C -0.14 -0.79 5.68 -27.89 -0.16 -0.95 16 21 C -0.03 -0.23 5.00 -27.88 -0.14 -0.37 16 22 C -0.17 -1.15 5.76 -36.00 -0.21 -1.35 16 23 C -0.14 -0.88 10.05 -41.21 -0.41 -1.29 16 24 C -0.13 -0.77 10.18 -41.21 -0.42 -1.19 16 25 C -0.22 -1.24 11.23 29.04 0.33 -0.92 16 26 S 0.10 0.61 23.33 -107.50 -2.51 -1.89 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 32 H 0.03 0.32 8.14 -51.92 -0.42 -0.11 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.40 2.02 8.47 -40.82 -0.35 1.67 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 399.89 15.07 6.03 6.03 Total: -1.00 -33.91 399.89 -10.20 -44.11 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -6.85 Total: 11.64 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.65 Total: 1.93 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.37 Total: -55.12 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.18 Total: -22.66 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.51 Total: -1.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.91 -10.20 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175712046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.363 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds