Wall clock time and date at job start Tue Mar 31 2020 22:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00408 * 2 1 4 4 H 1.48498 * 109.47321 * 270.00460 * 3 2 1 5 5 H 1.48503 * 109.46950 * 30.00301 * 3 2 1 6 6 H 1.48503 * 109.47234 * 149.99848 * 3 2 1 7 7 C 1.38953 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00382 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99674 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00091 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99866 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47044 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00139 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47364 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47213 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.46986 * 180.02562 * 16 15 14 18 18 C 1.34784 * 119.99741 * 180.02562 * 17 16 15 19 19 O 1.21281 * 120.00093 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.99865 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.47110 * 179.97438 * 20 18 17 22 22 C 1.50706 * 109.47116 * 179.97438 * 21 20 18 23 23 C 1.33391 * 125.19937 * 90.00083 * 22 21 20 24 24 C 1.38423 * 114.92045 * 179.97438 * 23 22 21 25 25 C 1.33390 * 114.91979 * 359.97438 * 24 23 22 26 26 S 1.75878 * 125.20693 * 269.69344 * 22 21 20 27 27 H 0.97001 * 119.99738 * 359.97438 * 1 2 3 28 28 H 0.97009 * 120.00051 * 0.02562 * 9 7 2 29 29 H 1.08993 * 109.46934 * 59.99997 * 12 10 9 30 30 H 1.09004 * 109.46776 * 300.00204 * 12 10 9 31 31 H 1.00899 * 111.00382 * 303.95289 * 13 12 10 32 32 H 1.09008 * 109.46741 * 60.00031 * 14 13 12 33 33 H 1.09003 * 109.46886 * 300.00514 * 14 13 12 34 34 H 1.09005 * 109.46552 * 60.00359 * 15 14 13 35 35 H 1.08991 * 109.47305 * 300.00470 * 15 14 13 36 36 H 1.09000 * 109.47214 * 59.99786 * 16 15 14 37 37 H 1.09000 * 109.46955 * 300.00002 * 16 15 14 38 38 H 0.96998 * 120.00681 * 359.97438 * 17 16 15 39 39 H 1.09000 * 109.47543 * 59.99570 * 20 18 17 40 40 H 1.09008 * 109.47338 * 300.00084 * 20 18 17 41 41 H 1.09000 * 109.46884 * 60.00335 * 21 20 18 42 42 H 1.09000 * 109.46955 * 299.99651 * 21 20 18 43 43 H 1.07995 * 122.54106 * 359.95411 * 23 22 21 44 44 H 1.08001 * 122.53959 * 180.02562 * 24 23 22 45 45 H 1.07998 * 125.20163 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2435 -4.8630 -0.0010 13 7 2.1981 -5.9795 -0.0017 14 6 1.4978 -7.2709 -0.0006 15 6 2.5226 -8.4069 -0.0020 16 6 1.7932 -9.7518 -0.0015 17 7 2.7745 -10.8395 -0.0023 18 6 2.3592 -12.1218 -0.0025 19 8 1.1731 -12.3751 -0.0015 20 6 3.3686 -13.2407 -0.0039 21 6 2.6392 -14.5856 -0.0032 22 6 3.6487 -15.7046 -0.0052 23 6 4.1655 -16.2759 1.0838 24 6 5.0770 -17.2875 0.8350 25 6 5.3000 -17.5380 -0.4561 26 16 4.3199 -16.4621 -1.4436 27 1 -0.4850 0.8401 0.0004 28 1 0.3532 -2.3906 -0.0005 29 1 0.6159 -4.9204 -0.8902 30 1 0.6179 -4.9208 0.8897 31 1 2.8324 -5.9126 -0.7836 32 1 0.8719 -7.3455 -0.8899 33 1 0.8738 -7.3450 0.8901 34 1 3.1488 -8.3323 0.8871 35 1 3.1462 -8.3325 -0.8928 36 1 1.1672 -9.8260 -0.8907 37 1 1.1693 -9.8264 0.8892 38 1 3.7231 -10.6370 -0.0034 39 1 3.9944 -13.1667 0.8856 40 1 3.9928 -13.1659 -0.8944 41 1 2.0133 -14.6599 -0.8924 42 1 2.0154 -14.6601 0.8876 43 1 3.8936 -15.9720 2.0838 44 1 5.5696 -17.8331 1.6262 45 1 5.9761 -18.2893 -0.8367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175712046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:25 Heat of formation + Delta-G solvation = -81.049557 kcal Electronic energy + Delta-G solvation = -24361.470587 eV Core-core repulsion = 20503.799100 eV Total energy + Delta-G solvation = -3857.671487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81667 -40.15230 -38.80549 -37.65724 -36.12321 -35.63018 -34.66917 -33.29186 -32.41205 -29.89573 -28.50240 -26.72533 -25.78187 -24.37619 -23.25980 -22.57147 -21.27680 -20.99479 -20.12081 -19.90049 -18.43503 -17.85197 -17.51248 -17.27553 -16.93175 -16.80029 -16.48472 -16.27094 -15.96073 -15.79245 -15.20456 -15.13630 -14.73882 -14.54619 -14.19862 -14.11135 -13.64749 -13.54749 -13.36829 -13.24922 -13.12325 -12.97221 -12.89831 -12.84046 -12.63643 -12.41847 -12.41080 -12.11458 -12.00116 -11.84160 -11.58309 -11.50403 -10.96913 -10.35333 -10.09373 -10.01700 -9.55518 -9.38969 -9.33494 -8.46674 -5.95626 0.08673 0.73253 1.12219 1.38503 1.42480 1.55298 1.63368 1.84662 2.04992 2.19120 2.30562 2.95479 3.20790 3.52798 3.63492 3.95523 4.01072 4.08015 4.12497 4.16740 4.26688 4.31145 4.36187 4.48713 4.55767 4.57417 4.59587 4.69157 4.71390 4.74018 4.80149 4.90068 5.07934 5.17161 5.22246 5.26563 5.41008 5.41565 5.45981 5.61974 5.88470 6.09765 6.41256 6.55316 6.59936 7.12426 7.24957 7.56055 8.11090 8.70740 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042018 B = 0.001148 C = 0.001133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.221854 B =24384.045772 C =24697.046403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.683 5.683 14 C 0.062 3.938 15 C -0.115 4.115 16 C 0.126 3.874 17 N -0.720 5.720 18 C 0.510 3.490 19 O -0.587 6.587 20 C -0.126 4.126 21 C -0.030 4.030 22 C -0.182 4.182 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.218 4.218 26 S 0.078 5.922 27 H 0.278 0.722 28 H 0.396 0.604 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.345 0.655 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.417 0.583 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.152 0.848 44 H 0.158 0.842 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -34.600 -0.621 35.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.316 5.316 14 C -0.067 4.067 15 C -0.153 4.153 16 C 0.001 3.999 17 N -0.372 5.372 18 C 0.298 3.702 19 O -0.467 6.467 20 C -0.166 4.166 21 C -0.069 4.069 22 C -0.299 4.299 23 C -0.174 4.174 24 C -0.172 4.172 25 C -0.353 4.353 26 S 0.341 5.659 27 H 0.087 0.913 28 H 0.230 0.770 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.164 0.836 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.169 0.831 44 H 0.175 0.825 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.661 -34.410 -1.494 35.080 hybrid contribution -0.029 0.847 0.556 1.013 sum 6.632 -33.563 -0.938 34.225 Atomic orbital electron populations 1.69673 1.06873 1.29322 1.50273 1.26038 0.96517 1.02412 0.96181 0.84929 0.77907 0.76840 0.78672 1.19578 1.19563 1.19732 1.19690 0.92753 0.84065 1.50042 0.90260 1.41938 1.09344 1.04730 1.64980 1.20898 0.88281 0.86197 0.82227 1.90485 1.15822 1.87980 1.56707 1.21534 0.94055 0.88121 1.03119 1.60049 1.19199 1.00920 1.51404 1.21916 0.95876 0.87376 1.01542 1.21584 0.98300 0.91435 1.04004 1.21174 0.91465 0.85347 1.01877 1.45968 1.11348 1.05213 1.74710 1.21150 0.89781 0.84569 0.74746 1.90709 1.19827 1.84645 1.51536 1.21670 0.97417 0.90748 1.06788 1.19765 0.94173 0.89040 1.03969 1.24518 1.05332 1.04115 0.95924 1.20427 0.99091 0.97988 0.99902 1.20459 1.00199 0.99522 0.97026 1.25926 1.06638 1.05918 0.96797 1.84446 1.39327 1.31821 1.10297 0.91285 0.76968 0.91549 0.87856 0.83599 0.94143 0.90351 0.90228 0.90433 0.92119 0.92034 0.74651 0.86311 0.87017 0.91263 0.89807 0.83083 0.82485 0.80165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 3 Si 0.99 42.74 29.55 68.60 2.03 44.76 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -29.36 5.29 -306.97 -1.62 -30.98 16 10 C 0.44 20.67 7.82 87.66 0.69 21.35 16 11 O -0.62 -34.34 15.78 -3.08 -0.05 -34.39 16 12 C 0.06 2.16 6.17 85.56 0.53 2.68 16 13 N -0.68 -20.43 6.12 -517.93 -3.17 -23.60 16 14 C 0.06 1.30 5.69 86.30 0.49 1.79 16 15 C -0.12 -1.87 5.59 30.59 0.17 -1.70 16 16 C 0.13 2.05 5.67 86.38 0.49 2.54 16 17 N -0.72 -9.73 5.56 -463.06 -2.57 -12.31 16 18 C 0.51 8.62 7.83 87.65 0.69 9.31 16 19 O -0.59 -15.27 15.98 -3.03 -0.05 -15.31 16 20 C -0.13 -1.29 5.68 29.85 0.17 -1.12 16 21 C -0.03 -0.39 5.00 29.85 0.15 -0.24 16 22 C -0.18 -2.28 5.76 24.59 0.14 -2.13 16 23 C -0.14 -1.60 10.05 21.22 0.21 -1.39 16 24 C -0.14 -1.40 10.18 21.22 0.22 -1.18 16 25 C -0.22 -2.17 11.23 66.72 0.75 -1.42 16 26 S 0.08 0.95 23.33 -56.49 -1.32 -0.37 16 27 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 28 H 0.40 19.29 7.90 -92.70 -0.73 18.55 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.35 10.70 8.43 -89.69 -0.76 9.94 16 32 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.42 3.28 8.47 -92.71 -0.79 2.49 16 39 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 42 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 45 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -73.69 399.89 -1.75 -75.44 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -1.25 Total: 36.04 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.97 Total: 10.06 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -7.08 Total: -116.23 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.10 Total: -49.70 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -1.32 Total: -0.37 kcal Total: -73.69 -1.75 -75.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175712046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.606 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds