Wall clock time and date at job start Tue Mar 31 2020 23:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47167 * 89.99892 * 6 5 4 8 8 O 1.21283 * 120.00356 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00007 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00315 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47227 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47068 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47075 * 180.02562 * 12 11 10 14 14 C 1.46907 * 110.99830 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46811 * 180.02562 * 14 13 12 16 16 O 1.21288 * 120.00226 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99554 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99419 * 179.97438 * 17 15 14 19 19 H 1.07993 * 120.00270 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99774 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99672 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99862 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47379 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46947 * 120.00074 * 22 20 18 25 25 H 1.48500 * 109.47063 * 239.99892 * 22 20 18 26 26 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 27 27 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 30 30 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 31 31 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 32 32 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 33 33 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 34 34 H 0.97005 * 119.99811 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.47012 * 299.99838 * 10 9 7 36 36 H 1.09004 * 109.47200 * 60.00185 * 10 9 7 37 37 H 1.08997 * 109.47320 * 300.00051 * 11 10 9 38 38 H 1.09001 * 109.46765 * 60.00680 * 11 10 9 39 39 H 1.09001 * 109.47662 * 300.00235 * 12 11 10 40 40 H 1.09002 * 109.47159 * 60.00151 * 12 11 10 41 41 H 1.00897 * 110.99850 * 56.04842 * 13 12 11 42 42 H 1.09001 * 109.46795 * 299.99841 * 14 13 12 43 43 H 1.08998 * 109.47242 * 60.00200 * 14 13 12 44 44 H 0.96992 * 120.00118 * 359.97438 * 17 15 14 45 45 H 0.96996 * 119.99711 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 6 5.8564 -1.1535 1.4212 8 8 5.1187 -0.8763 2.3431 9 7 7.0973 -1.6184 1.6674 10 6 7.5547 -1.7895 3.0486 11 6 8.9872 -2.3270 3.0485 12 6 9.4652 -2.5051 4.4910 13 7 10.8408 -3.0206 4.4909 14 6 11.3339 -3.2050 5.8624 15 6 12.7448 -3.7331 5.8221 16 8 13.2861 -3.9363 4.7559 17 7 13.4048 -3.9805 6.9709 18 6 14.6881 -4.4614 6.9342 19 1 15.1701 -4.6423 5.9848 20 6 15.3688 -4.7161 8.1186 21 7 14.7824 -4.4954 9.2738 22 14 17.1171 -5.3720 8.0686 23 1 17.5453 -5.5327 6.6558 24 1 18.0239 -4.4167 8.7545 25 1 17.1722 -6.6872 8.7558 26 16 2.5210 -1.4371 0.0077 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.8669 2.0895 -0.0007 31 1 4.3721 1.6351 0.0002 32 1 5.4136 -1.9379 -0.5135 33 1 6.0389 -0.2713 -0.5134 34 1 7.6874 -1.8398 0.9301 35 1 7.5269 -0.8285 3.5622 36 1 6.9023 -2.4953 3.5627 37 1 9.0147 -3.2881 2.5350 38 1 9.6399 -1.6215 2.5344 39 1 9.4378 -1.5438 5.0042 40 1 8.8125 -3.2103 5.0056 41 1 11.4534 -2.4161 3.9643 42 1 11.3190 -2.2488 6.3855 43 1 10.6945 -3.9157 6.3860 44 1 12.9718 -3.8184 7.8235 45 1 15.2574 -4.6735 10.1005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176921326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:04 Heat of formation + Delta-G solvation = -53.886935 kcal Electronic energy + Delta-G solvation = -24540.858659 eV Core-core repulsion = 20684.365032 eV Total energy + Delta-G solvation = -3856.493627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.08703 -38.35229 -38.18860 -36.56975 -34.88343 -33.85407 -33.48569 -31.63640 -31.16855 -30.08505 -27.21782 -25.65318 -24.60582 -23.37671 -22.90865 -21.74778 -20.79136 -19.27176 -19.14083 -17.89934 -17.44672 -17.27669 -16.51333 -16.15876 -15.93090 -15.50841 -15.34111 -14.73410 -14.51022 -14.45217 -14.27012 -13.93377 -13.65653 -13.50462 -13.48541 -13.31710 -13.06708 -12.78745 -12.31548 -12.21034 -12.06070 -11.84903 -11.82576 -11.76302 -11.47748 -11.44007 -11.10626 -11.03469 -10.96114 -10.34815 -10.23674 -10.20358 -9.52682 -9.37062 -8.78846 -8.72946 -8.48266 -8.08629 -7.96665 -6.42370 -3.83220 0.63243 1.27557 1.66756 2.32922 2.37765 2.92681 3.15955 3.26585 3.33831 3.90028 4.07855 4.18950 4.29510 4.48886 4.52702 4.67272 4.79842 4.85132 4.94572 4.96826 5.03391 5.08850 5.16614 5.20108 5.25367 5.31406 5.41361 5.48492 5.50228 5.61241 5.78302 5.82442 5.93388 5.94842 5.97455 6.01379 6.14097 6.19609 6.26078 7.15773 7.17796 7.54862 7.63041 7.90920 8.05910 8.60573 9.17291 9.53726 10.04983 10.75463 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.050516 B = 0.001211 C = 0.001201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.144113 B =23123.870573 C =23304.909185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.180 4.180 3 C -0.140 4.140 4 C -0.122 4.122 5 C -0.163 4.163 6 C -0.070 4.070 7 C 0.511 3.489 8 O -0.527 6.527 9 N -0.730 5.730 10 C 0.121 3.879 11 C -0.129 4.129 12 C 0.062 3.938 13 N -0.670 5.670 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 S 0.109 5.891 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.402 0.598 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.406 10.436 -18.981 34.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.297 4.297 3 C -0.170 4.170 4 C -0.152 4.152 5 C -0.281 4.281 6 C -0.112 4.112 7 C 0.296 3.704 8 O -0.403 6.403 9 N -0.382 5.382 10 C -0.003 4.003 11 C -0.167 4.167 12 C -0.068 4.068 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 S 0.373 5.627 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.236 0.764 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.974 8.255 -18.873 33.940 hybrid contribution 1.417 2.111 0.677 2.631 sum -25.557 10.365 -18.196 33.041 Atomic orbital electron populations 1.20340 0.87864 1.03243 1.02674 1.24479 0.99943 0.95754 1.09530 1.20019 0.92821 0.99217 1.04969 1.20003 0.96330 0.95706 1.03161 1.23685 0.97128 0.96633 1.10645 1.20149 0.92030 1.03835 0.95211 1.20494 0.81579 0.77167 0.91201 1.90751 1.54347 1.49099 1.46076 1.46003 1.15400 1.67443 1.09400 1.21331 0.95136 1.01454 0.82387 1.21742 0.94278 1.02433 0.98244 1.21829 0.91275 0.98261 0.95431 1.60047 1.02138 1.54429 1.13580 1.21674 0.96278 1.00117 0.90149 1.19812 0.87495 0.85077 0.85035 1.90517 1.69233 1.57425 1.29661 1.41871 1.14091 1.57271 1.06781 1.19762 0.89219 1.39369 0.94574 0.87857 1.25266 1.00313 0.97718 0.94630 1.69621 1.38278 1.48892 0.97492 0.85800 0.81669 0.78286 0.78589 1.19200 1.20773 1.20726 1.84187 0.96246 1.09284 1.72971 0.90752 0.90513 0.91297 0.84452 0.84544 0.87715 0.86900 0.76363 0.91444 0.91220 0.90094 0.91245 0.95255 0.90772 0.83198 0.93815 0.89532 0.77441 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.38 36.01 0.37 -0.07 16 2 C -0.18 -1.44 6.51 -36.00 -0.23 -1.68 16 3 C -0.14 -1.13 10.05 -41.21 -0.41 -1.55 16 4 C -0.12 -1.03 10.05 -41.21 -0.41 -1.45 16 5 C -0.16 -1.41 5.00 -36.00 -0.18 -1.59 16 6 C -0.07 -0.45 6.19 -29.04 -0.18 -0.63 16 7 C 0.51 4.85 7.82 -10.99 -0.09 4.76 16 8 O -0.53 -7.37 16.03 5.55 0.09 -7.28 16 9 N -0.73 -5.56 5.56 -60.30 -0.33 -5.90 16 10 C 0.12 1.08 5.67 -4.04 -0.02 1.06 16 11 C -0.13 -1.17 5.59 -26.73 -0.15 -1.32 16 12 C 0.06 0.72 5.69 -3.82 -0.02 0.70 16 13 N -0.67 -10.50 6.13 -115.05 -0.70 -11.20 16 14 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 15 C 0.44 10.40 7.82 -10.98 -0.09 10.32 16 16 O -0.58 -15.84 15.78 5.55 0.09 -15.76 16 17 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 21 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 22 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 S 0.11 0.94 23.31 -107.50 -2.51 -1.57 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.40 1.94 8.47 -40.82 -0.35 1.59 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.35 5.58 8.43 -39.29 -0.33 5.24 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 400.37 15.07 6.03 6.03 Total: -1.00 -34.97 400.37 -10.23 -45.20 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.85 Total: 11.28 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.69 Total: 1.39 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.37 Total: -55.29 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.18 Total: -23.03 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.97 -10.23 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176921326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.687 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds