Wall clock time and date at job start Tue Mar 31 2020 22:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86789 * 120.00302 * 2 1 4 4 H 1.48503 * 109.47675 * 270.00617 * 3 2 1 5 5 H 1.48498 * 109.47248 * 30.00397 * 3 2 1 6 6 H 1.48501 * 109.47162 * 150.00444 * 3 2 1 7 7 C 1.38815 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00267 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99767 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99943 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47030 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47343 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47346 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.46972 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46969 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47035 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.21682 * 119.99992 * 0.02562 * 17 16 15 19 19 C 1.46726 * 119.99990 * 180.02562 * 17 16 15 20 20 C 1.34877 * 125.05848 * 180.02562 * 19 17 16 21 21 C 1.38941 * 113.65683 * 180.02562 * 20 19 17 22 22 C 1.47334 * 122.96183 * 180.02562 * 21 20 19 23 23 N 1.34772 * 119.99976 * 180.02562 * 22 21 20 24 24 O 1.21624 * 119.99695 * 359.97438 * 22 21 20 25 25 C 1.36651 * 114.07424 * 359.97438 * 21 20 19 26 26 S 1.70598 * 110.53286 * 359.72782 * 25 21 20 27 27 H 0.97000 * 120.00111 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99971 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47157 * 60.00830 * 10 9 7 30 30 H 1.09000 * 109.47217 * 300.00264 * 10 9 7 31 31 H 1.09004 * 109.46930 * 60.00232 * 11 10 9 32 32 H 1.09000 * 109.47312 * 300.00176 * 11 10 9 33 33 H 1.08996 * 109.47261 * 59.99825 * 12 11 10 34 34 H 1.09000 * 109.46870 * 300.00214 * 12 11 10 35 35 H 1.08992 * 109.46974 * 59.99681 * 13 12 11 36 36 H 1.08996 * 109.46550 * 299.99576 * 13 12 11 37 37 H 1.09004 * 109.47298 * 59.99824 * 14 13 12 38 38 H 1.09004 * 109.47552 * 299.99695 * 14 13 12 39 39 H 1.09004 * 109.46930 * 59.99996 * 15 14 13 40 40 H 1.09000 * 109.47312 * 299.99939 * 15 14 13 41 41 H 0.96999 * 120.00080 * 0.02562 * 16 15 14 42 42 H 1.08004 * 123.16983 * 0.02562 * 20 19 17 43 43 H 0.96998 * 120.00040 * 359.97438 * 23 22 21 44 44 H 0.97002 * 119.99880 * 180.02562 * 23 22 21 45 45 H 1.08002 * 124.73555 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 6 6.3812 -3.5165 -0.0017 13 6 7.8855 -3.2370 -0.0011 14 6 8.6504 -4.5620 -0.0024 15 6 10.1547 -4.2825 -0.0024 16 7 10.8871 -5.5513 -0.0030 17 6 12.2349 -5.5514 -0.0036 18 8 12.8433 -4.4976 -0.0032 19 6 12.9685 -6.8221 -0.0048 20 6 14.3120 -6.9411 -0.0050 21 6 14.7551 -8.2579 -0.0068 22 6 16.1823 -8.6235 -0.0068 23 7 16.5455 -9.9214 -0.0091 24 8 17.0327 -7.7540 -0.0056 25 6 13.7503 -9.1841 -0.0074 26 16 12.2276 -8.4151 0.0018 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3623 -0.0007 29 1 3.8484 -3.0427 -0.8909 30 1 3.8489 -3.0424 0.8891 31 1 5.8796 -1.6200 0.8890 32 1 5.8796 -1.6199 -0.8910 33 1 6.1178 -4.0877 -0.8919 34 1 6.1179 -4.0885 0.8880 35 1 8.1485 -2.6660 0.8893 36 1 8.1490 -2.6649 -0.8906 37 1 8.3872 -5.1327 -0.8930 38 1 8.3869 -5.1346 0.8870 39 1 10.4181 -3.7117 0.8881 40 1 10.4179 -3.7102 -0.8919 41 1 10.4021 -6.3914 -0.0037 42 1 14.9803 -6.0927 -0.0039 43 1 15.8673 -10.6148 -0.0104 44 1 17.4852 -10.1620 -0.0087 45 1 13.8994 -10.2538 -0.0084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180387007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:41 Heat of formation + Delta-G solvation = -53.650035 kcal Electronic energy + Delta-G solvation = -24392.647459 eV Core-core repulsion = 20536.164104 eV Total energy + Delta-G solvation = -3856.483355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.63362 -39.97341 -37.55214 -36.87687 -35.59150 -34.39634 -34.12073 -32.09325 -30.93475 -30.09146 -27.42291 -26.15808 -24.59881 -23.19615 -22.07291 -21.37146 -20.86721 -20.79226 -19.75143 -19.33244 -17.76504 -17.61520 -17.45620 -16.40799 -16.39486 -16.09835 -15.64096 -15.30289 -15.02668 -14.57126 -14.48135 -14.20396 -13.92417 -13.79763 -13.43204 -13.36006 -13.26054 -12.96824 -12.72532 -12.44637 -11.98153 -11.85726 -11.64390 -11.49037 -11.03637 -10.88169 -10.80144 -10.74654 -10.58999 -10.38211 -10.36339 -10.28309 -10.07417 -9.77583 -9.56907 -9.52330 -9.34997 -8.86878 -7.20269 -5.75086 -3.10142 -0.33833 0.63018 0.99981 1.05566 2.51479 2.53816 2.82720 2.91512 3.39318 3.42454 3.46872 4.01047 4.25173 4.33858 4.44587 4.47010 4.61312 4.64976 4.82517 5.03185 5.12473 5.19755 5.27713 5.34137 5.46957 5.51210 5.52561 5.56950 5.61749 5.75746 5.84172 5.92791 6.00319 6.11444 6.11815 6.20508 6.23358 6.37295 6.63805 6.79113 6.83308 6.90977 7.60502 7.64160 8.02044 8.44420 9.24084 9.96727 10.17022 11.43541 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.041167 B = 0.001252 C = 0.001218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.996970 B =22352.892859 C =22991.230369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.759 5.759 10 C 0.156 3.844 11 C -0.131 4.131 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.118 3.882 16 N -0.726 5.726 17 C 0.588 3.412 18 O -0.520 6.520 19 C -0.269 4.269 20 C -0.011 4.011 21 C -0.162 4.162 22 C 0.582 3.418 23 N -0.850 5.850 24 O -0.532 6.532 25 C -0.202 4.202 26 S 0.253 5.747 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.397 0.603 42 H 0.166 0.834 43 H 0.400 0.600 44 H 0.408 0.592 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.987 -26.834 -0.009 42.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.029 3.971 11 C -0.169 4.169 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.170 4.170 15 C -0.005 4.005 16 N -0.377 5.377 17 C 0.373 3.627 18 O -0.397 6.397 19 C -0.390 4.390 20 C -0.042 4.042 21 C -0.180 4.180 22 C 0.366 3.634 23 N -0.414 5.414 24 O -0.409 6.409 25 C -0.341 4.341 26 S 0.521 5.479 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.232 0.768 42 H 0.183 0.817 43 H 0.229 0.771 44 H 0.239 0.761 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 32.052 -25.954 0.005 41.243 hybrid contribution 1.809 0.607 0.000 1.908 sum 33.861 -25.346 0.004 42.297 Atomic orbital electron populations 1.69706 1.05117 1.25807 1.57763 1.24678 0.95256 0.97240 1.02087 0.86522 0.79209 0.84875 0.77790 1.21069 1.21706 1.20334 1.19094 0.80763 0.94750 1.42849 0.89272 1.42749 1.04069 1.02423 1.91178 1.20635 0.88915 0.89163 0.98379 1.21785 0.96257 0.96960 1.01888 1.21489 0.93451 0.98021 1.02184 1.21516 0.95273 0.95970 1.02696 1.21844 0.92684 0.99493 1.02957 1.21535 0.91169 0.84741 1.03076 1.45904 1.05666 1.10367 1.75772 1.16914 0.81924 0.87083 0.76730 1.90879 1.68062 1.31490 1.49316 1.24225 0.98012 0.97663 1.19058 1.20372 0.93735 0.97265 0.92860 1.19060 0.93982 0.93199 1.11787 1.17590 0.87469 0.82816 0.75529 1.43663 1.12333 1.07138 1.78227 1.90886 1.52053 1.48701 1.49253 1.26119 0.98053 1.04732 1.05243 1.83060 1.05149 0.94728 1.64985 0.93087 0.80712 0.95709 0.95777 0.92124 0.92117 0.91865 0.91883 0.91561 0.91564 0.91102 0.91101 0.90891 0.90882 0.76846 0.81682 0.77138 0.76073 0.80450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.81 13.97 55.49 0.78 -29.04 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.47 27.73 -169.99 -4.71 17.76 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 7 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 N -0.76 -18.59 5.41 -59.91 -0.32 -18.92 16 10 C 0.16 3.04 6.26 -4.04 -0.03 3.01 16 11 C -0.13 -1.93 5.33 -26.73 -0.14 -2.07 16 12 C -0.11 -1.24 5.21 -26.73 -0.14 -1.38 16 13 C -0.12 -1.02 5.21 -26.73 -0.14 -1.16 16 14 C -0.13 -0.89 5.33 -26.73 -0.14 -1.03 16 15 C 0.12 0.91 5.67 -4.04 -0.02 0.89 16 16 N -0.73 -5.22 5.55 -61.60 -0.34 -5.56 16 17 C 0.59 5.72 7.78 -12.83 -0.10 5.62 16 18 O -0.52 -7.19 16.79 5.21 0.09 -7.10 16 19 C -0.27 -2.01 6.37 -37.35 -0.24 -2.25 16 20 C -0.01 -0.09 9.47 -40.51 -0.38 -0.48 16 21 C -0.16 -1.01 5.82 -106.51 -0.62 -1.63 16 22 C 0.58 4.19 8.06 -12.56 -0.10 4.09 16 23 N -0.85 -2.17 8.84 30.41 0.27 -1.91 16 24 O -0.53 -6.31 17.53 5.26 0.09 -6.21 16 25 C -0.20 -0.58 10.41 30.16 0.31 -0.27 16 26 S 0.25 0.83 22.09 -107.50 -2.37 -1.55 16 27 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16 28 H 0.36 8.58 5.53 -40.82 -0.23 8.35 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.40 1.80 7.55 -40.82 -0.31 1.49 16 42 H 0.17 1.66 7.95 -52.48 -0.42 1.24 16 43 H 0.40 -0.29 7.29 -40.82 -0.30 -0.59 16 44 H 0.41 0.67 8.93 -40.82 -0.36 0.31 16 45 H 0.18 -0.17 6.99 -52.49 -0.37 -0.53 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -38.88 393.86 -9.23 -48.11 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.64 Total: 2.41 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.99 Total: -3.93 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.38 Total: -55.42 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.18 Total: -13.31 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.37 Total: -1.55 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.88 -9.23 -48.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180387007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.536 kcal (2) G-P(sol) polarization free energy of solvation -38.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds