Wall clock time and date at job start Tue Mar 31 2020 22:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86789 * 120.00302 * 2 1 4 4 H 1.48503 * 109.47675 * 270.00617 * 3 2 1 5 5 H 1.48498 * 109.47248 * 30.00397 * 3 2 1 6 6 H 1.48501 * 109.47162 * 150.00444 * 3 2 1 7 7 C 1.38815 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00267 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99767 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99943 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47030 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47343 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47346 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.46972 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46969 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47035 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.21682 * 119.99992 * 0.02562 * 17 16 15 19 19 C 1.46726 * 119.99990 * 180.02562 * 17 16 15 20 20 C 1.34877 * 125.05848 * 180.02562 * 19 17 16 21 21 C 1.38941 * 113.65683 * 180.02562 * 20 19 17 22 22 C 1.47334 * 122.96183 * 180.02562 * 21 20 19 23 23 N 1.34772 * 119.99976 * 180.02562 * 22 21 20 24 24 O 1.21624 * 119.99695 * 359.97438 * 22 21 20 25 25 C 1.36651 * 114.07424 * 359.97438 * 21 20 19 26 26 S 1.70598 * 110.53286 * 359.72782 * 25 21 20 27 27 H 0.97000 * 120.00111 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99971 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47157 * 60.00830 * 10 9 7 30 30 H 1.09000 * 109.47217 * 300.00264 * 10 9 7 31 31 H 1.09004 * 109.46930 * 60.00232 * 11 10 9 32 32 H 1.09000 * 109.47312 * 300.00176 * 11 10 9 33 33 H 1.08996 * 109.47261 * 59.99825 * 12 11 10 34 34 H 1.09000 * 109.46870 * 300.00214 * 12 11 10 35 35 H 1.08992 * 109.46974 * 59.99681 * 13 12 11 36 36 H 1.08996 * 109.46550 * 299.99576 * 13 12 11 37 37 H 1.09004 * 109.47298 * 59.99824 * 14 13 12 38 38 H 1.09004 * 109.47552 * 299.99695 * 14 13 12 39 39 H 1.09004 * 109.46930 * 59.99996 * 15 14 13 40 40 H 1.09000 * 109.47312 * 299.99939 * 15 14 13 41 41 H 0.96999 * 120.00080 * 0.02562 * 16 15 14 42 42 H 1.08004 * 123.16983 * 0.02562 * 20 19 17 43 43 H 0.96998 * 120.00040 * 359.97438 * 23 22 21 44 44 H 0.97002 * 119.99880 * 180.02562 * 23 22 21 45 45 H 1.08002 * 124.73555 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 6 6.3812 -3.5165 -0.0017 13 6 7.8855 -3.2370 -0.0011 14 6 8.6504 -4.5620 -0.0024 15 6 10.1547 -4.2825 -0.0024 16 7 10.8871 -5.5513 -0.0030 17 6 12.2349 -5.5514 -0.0036 18 8 12.8433 -4.4976 -0.0032 19 6 12.9685 -6.8221 -0.0048 20 6 14.3120 -6.9411 -0.0050 21 6 14.7551 -8.2579 -0.0068 22 6 16.1823 -8.6235 -0.0068 23 7 16.5455 -9.9214 -0.0091 24 8 17.0327 -7.7540 -0.0056 25 6 13.7503 -9.1841 -0.0074 26 16 12.2276 -8.4151 0.0018 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3623 -0.0007 29 1 3.8484 -3.0427 -0.8909 30 1 3.8489 -3.0424 0.8891 31 1 5.8796 -1.6200 0.8890 32 1 5.8796 -1.6199 -0.8910 33 1 6.1178 -4.0877 -0.8919 34 1 6.1179 -4.0885 0.8880 35 1 8.1485 -2.6660 0.8893 36 1 8.1490 -2.6649 -0.8906 37 1 8.3872 -5.1327 -0.8930 38 1 8.3869 -5.1346 0.8870 39 1 10.4181 -3.7117 0.8881 40 1 10.4179 -3.7102 -0.8919 41 1 10.4021 -6.3914 -0.0037 42 1 14.9803 -6.0927 -0.0039 43 1 15.8673 -10.6148 -0.0104 44 1 17.4852 -10.1620 -0.0087 45 1 13.8994 -10.2538 -0.0084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180387007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:40 Heat of formation + Delta-G solvation = -85.093619 kcal Electronic energy + Delta-G solvation = -24394.010955 eV Core-core repulsion = 20536.164104 eV Total energy + Delta-G solvation = -3857.846851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20054 -40.62079 -38.15391 -37.82483 -36.83907 -35.38645 -34.83968 -33.71940 -32.14143 -30.92604 -28.54850 -26.67549 -25.76088 -24.27855 -23.20983 -22.31397 -22.05371 -21.44755 -20.22311 -19.84466 -19.57826 -18.15904 -18.04542 -17.11198 -17.09903 -16.64499 -16.53487 -16.43869 -15.96474 -15.81847 -15.50650 -15.41599 -14.88508 -14.77557 -14.23775 -14.23184 -14.12674 -13.82951 -13.73611 -13.48357 -13.33482 -13.03042 -12.67580 -12.48552 -12.39943 -12.07821 -11.89381 -11.85223 -11.80956 -11.59762 -11.33356 -11.32112 -11.18117 -10.96857 -10.78052 -10.39293 -10.03944 -9.68106 -9.30410 -8.04326 -5.37918 -0.74482 0.26174 0.50309 0.60997 1.37652 1.41099 1.48732 1.86822 1.94334 2.29473 2.47825 2.55792 3.27243 3.56385 3.63643 3.87232 3.92034 4.01511 4.02958 4.07144 4.21216 4.25162 4.30799 4.56260 4.59727 4.61336 4.77621 4.82057 4.91776 4.96320 4.97609 4.99580 5.06253 5.15132 5.26461 5.28735 5.38452 5.54666 5.57335 5.74519 5.82587 6.20475 6.32641 6.38527 6.99738 7.07147 7.25586 7.84338 8.03204 9.17343 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.041167 B = 0.001252 C = 0.001218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.996970 B =22352.892859 C =22991.230369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.252 1.252 7 C -0.241 4.241 8 H 0.056 0.944 9 N -0.764 5.764 10 C 0.150 3.850 11 C -0.122 4.122 12 C -0.106 4.106 13 C -0.113 4.113 14 C -0.120 4.120 15 C 0.119 3.881 16 N -0.711 5.711 17 C 0.584 3.416 18 O -0.576 6.576 19 C -0.304 4.304 20 C -0.028 4.028 21 C -0.191 4.191 22 C 0.578 3.422 23 N -0.824 5.824 24 O -0.595 6.595 25 C -0.173 4.173 26 S 0.343 5.657 27 H 0.259 0.741 28 H 0.366 0.634 29 H 0.023 0.977 30 H 0.022 0.978 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.413 0.587 42 H 0.129 0.871 43 H 0.419 0.581 44 H 0.414 0.586 45 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.726 -29.567 0.006 44.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.372 4.372 8 H 0.074 0.926 9 N -0.409 5.409 10 C 0.024 3.976 11 C -0.159 4.159 12 C -0.144 4.144 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.005 4.005 16 N -0.363 5.363 17 C 0.371 3.629 18 O -0.457 6.457 19 C -0.424 4.424 20 C -0.060 4.060 21 C -0.208 4.208 22 C 0.363 3.637 23 N -0.389 5.389 24 O -0.477 6.477 25 C -0.313 4.313 26 S 0.611 5.389 27 H 0.067 0.933 28 H 0.199 0.801 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.250 0.750 42 H 0.147 0.853 43 H 0.252 0.748 44 H 0.247 0.753 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 32.795 -28.806 0.020 43.650 hybrid contribution 1.464 1.235 -0.008 1.915 sum 34.259 -27.572 0.011 43.976 Atomic orbital electron populations 1.69890 1.07178 1.26795 1.59613 1.25547 0.96172 1.01397 1.02432 0.85365 0.78629 0.79327 0.78210 1.20284 1.22027 1.17650 1.19102 0.82923 0.93570 1.41617 0.92638 1.42815 1.02557 1.04547 1.91015 1.20876 0.91664 0.87098 0.97978 1.21710 0.93005 0.99226 1.02006 1.21423 0.94176 0.95888 1.02888 1.21449 0.93947 0.97111 1.02652 1.21729 0.91085 0.98618 1.04306 1.21470 0.92051 0.84859 1.02078 1.45764 1.04934 1.11001 1.74561 1.17303 0.82496 0.87334 0.75811 1.90839 1.69206 1.33687 1.51978 1.24091 0.97981 0.99465 1.20867 1.20269 0.94007 0.97672 0.94084 1.18845 0.94245 0.92855 1.14846 1.17838 0.87495 0.83516 0.74858 1.43459 1.13422 1.06000 1.75975 1.90853 1.53590 1.50658 1.52580 1.26687 0.97202 1.06539 1.00865 1.82740 1.03485 0.90302 1.62337 0.93258 0.80125 0.95876 0.95999 0.92075 0.91945 0.91169 0.91224 0.91728 0.91697 0.89722 0.89732 0.92026 0.92008 0.75017 0.85333 0.74839 0.75341 0.75748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.93 13.97 21.65 0.30 -63.63 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.96 46.05 27.73 68.60 1.90 47.96 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 7 C -0.24 -14.15 10.47 84.03 0.88 -13.27 16 8 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 9 N -0.76 -36.65 5.41 -343.45 -1.86 -38.51 16 10 C 0.15 5.63 6.26 86.38 0.54 6.17 16 11 C -0.12 -3.31 5.33 30.59 0.16 -3.15 16 12 C -0.11 -2.01 5.21 30.59 0.16 -1.85 16 13 C -0.11 -1.71 5.21 30.59 0.16 -1.55 16 14 C -0.12 -1.27 5.33 30.59 0.16 -1.11 16 15 C 0.12 1.72 5.67 86.38 0.49 2.21 16 16 N -0.71 -9.37 5.55 -467.02 -2.59 -11.97 16 17 C 0.58 11.67 7.78 86.46 0.67 12.34 16 18 O -0.58 -17.29 16.79 -4.29 -0.07 -17.36 16 19 C -0.30 -4.46 6.37 23.72 0.15 -4.31 16 20 C -0.03 -0.51 9.47 21.67 0.21 -0.30 16 21 C -0.19 -2.23 5.82 -21.09 -0.12 -2.35 16 22 C 0.58 8.32 8.06 86.64 0.70 9.02 16 23 N -0.82 -2.64 8.84 -175.95 -1.56 -4.19 16 24 O -0.59 -15.38 17.53 -4.11 -0.07 -15.46 16 25 C -0.17 -0.34 10.41 67.45 0.70 0.37 16 26 S 0.34 0.99 22.09 -56.49 -1.25 -0.26 16 27 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 28 H 0.37 16.63 5.53 -92.71 -0.51 16.12 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.41 2.59 7.55 -92.71 -0.70 1.89 16 42 H 0.13 3.16 7.95 -2.91 -0.02 3.14 16 43 H 0.42 -2.17 7.29 -92.71 -0.68 -2.84 16 44 H 0.41 0.74 8.93 -92.71 -0.83 -0.09 16 45 H 0.23 -1.85 6.99 -2.91 -0.02 -1.87 16 Total: -1.00 -91.02 393.86 -1.59 -92.61 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -1.72 Total: 11.96 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.33 Total: -1.15 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -5.70 Total: -118.29 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.14 Total: -32.82 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.96 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -1.25 Total: -0.26 kcal Total: -91.02 -1.59 -92.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180387007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.514 kcal (2) G-P(sol) polarization free energy of solvation -91.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds