Wall clock time and date at job start Tue Mar 31 2020 22:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86794 * 119.99937 * 2 1 4 4 H 1.48506 * 109.47145 * 270.00285 * 3 2 1 5 5 H 1.48500 * 109.47638 * 30.00038 * 3 2 1 6 6 H 1.48502 * 109.47327 * 150.00493 * 3 2 1 7 7 C 1.38795 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00414 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99979 * 179.97438 * 7 2 1 10 10 C 1.80995 * 100.00166 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47392 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00050 * 180.02562 * 11 10 9 14 14 C 1.46724 * 125.24390 * 0.02562 * 13 11 10 15 15 C 1.54038 * 106.53312 * 160.80264 * 14 13 11 16 16 C 1.53886 * 103.86197 * 28.03216 * 15 14 13 17 17 H 1.09004 * 111.74426 * 96.20626 * 16 15 14 18 18 C 1.53558 * 110.01160 * 220.92272 * 16 15 14 19 19 N 1.47912 * 106.90091 * 118.33992 * 18 16 15 20 20 C 1.46903 * 110.99974 * 211.75889 * 19 18 16 21 21 H 1.09000 * 110.43214 * 300.70270 * 20 19 18 22 22 C 1.54619 * 110.48740 * 178.15903 * 20 19 18 23 23 C 1.54480 * 101.76666 * 216.52309 * 22 20 19 24 24 N 1.46769 * 105.47142 * 25.41555 * 23 22 20 25 25 C 1.34651 * 111.33407 * 342.87025 * 24 23 22 26 26 O 1.21285 * 125.06877 * 180.51810 * 25 24 23 27 27 C 1.48333 * 105.71917 * 332.21165 * 19 18 16 28 28 C 1.46783 * 125.24023 * 180.02562 * 13 11 10 29 29 H 1.09000 * 112.62071 * 58.17211 * 28 13 11 30 30 H 0.97003 * 119.99511 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47002 * 60.00011 * 10 9 7 32 32 H 1.09004 * 109.47344 * 300.00499 * 10 9 7 33 33 H 1.08999 * 110.04152 * 41.52791 * 14 13 11 34 34 H 1.09002 * 110.04518 * 280.07082 * 14 13 11 35 35 H 1.09007 * 110.54571 * 269.43622 * 15 14 13 36 36 H 1.08995 * 110.54836 * 146.62994 * 15 14 13 37 37 H 1.09005 * 109.97615 * 237.70024 * 18 16 15 38 38 H 1.09003 * 109.97784 * 358.93968 * 18 16 15 39 39 H 1.09002 * 110.96773 * 334.64242 * 22 20 19 40 40 H 1.09000 * 110.96964 * 98.36935 * 22 20 19 41 41 H 1.09000 * 110.24426 * 144.41423 * 23 22 20 42 42 H 1.08999 * 110.25049 * 266.41655 * 23 22 20 43 43 H 0.96996 * 124.34791 * 162.97517 * 24 23 22 44 44 H 1.08998 * 110.52912 * 157.23664 * 27 19 18 45 45 H 1.09002 * 110.52646 * 279.85309 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4402 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5731 -3.2326 -0.0026 12 8 6.3440 -2.2964 -0.0024 13 7 6.0456 -4.4948 -0.0041 14 6 5.2203 -5.7079 -0.0062 15 6 6.1270 -6.8541 -0.4928 16 6 7.5388 -6.4132 -0.0679 17 1 7.8317 -6.8581 0.8831 18 6 8.5469 -6.7350 -1.1807 19 7 9.1260 -5.4474 -1.6218 20 6 9.4705 -5.4866 -3.0493 21 1 10.1912 -6.2805 -3.2452 22 6 10.0316 -4.1209 -3.5084 23 6 9.4530 -4.0064 -4.9361 24 7 8.2405 -4.8335 -4.9347 25 6 8.2271 -5.6814 -3.8888 26 8 7.3479 -6.4828 -3.6526 27 6 8.0845 -4.4256 -1.3541 28 6 7.4653 -4.8676 -0.0038 29 1 8.0051 -4.4621 0.8519 30 1 -0.4849 0.8401 0.0004 31 1 3.6433 -3.4310 -0.8927 32 1 3.6439 -3.4323 0.8873 33 1 4.3767 -5.5846 -0.6854 34 1 4.8615 -5.9174 1.0016 35 1 6.0676 -6.9552 -1.5765 36 1 5.8555 -7.7902 -0.0049 37 1 9.3331 -7.3840 -0.7947 38 1 8.0393 -7.2206 -2.0141 39 1 9.6645 -3.3149 -2.8729 40 1 11.1213 -4.1337 -3.5284 41 1 9.2020 -2.9695 -5.1594 42 1 10.1685 -4.3874 -5.6648 43 1 7.5392 -4.7777 -5.6025 44 1 8.5337 -3.4367 -1.2632 45 1 7.3318 -4.4315 -2.1425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186917139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:22 Heat of formation + Delta-G solvation = -72.500575 kcal Electronic energy + Delta-G solvation = -28268.823397 eV Core-core repulsion = 24411.522622 eV Total energy + Delta-G solvation = -3857.300775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.39763 -41.11052 -39.31371 -37.55735 -36.69220 -34.70978 -33.44086 -31.99124 -31.23598 -29.68188 -28.48245 -27.87957 -27.27690 -24.19509 -23.32912 -22.81402 -21.41144 -20.70178 -20.49818 -19.68595 -18.47146 -18.29077 -17.82368 -17.35433 -17.15748 -16.83587 -16.38114 -16.09172 -15.76011 -15.42516 -15.22556 -14.97595 -14.92513 -14.76839 -14.45961 -14.31103 -13.87510 -13.74772 -13.49516 -13.36992 -13.17140 -13.11639 -13.07318 -13.02697 -12.69345 -12.46397 -12.07117 -11.98158 -11.88071 -11.81619 -11.59220 -11.29768 -11.20225 -11.06723 -10.60017 -10.13463 -9.82700 -9.32971 -9.05113 -8.54754 -6.26832 0.90940 1.28878 1.39843 1.42653 1.44190 1.50493 1.96566 2.22444 2.36964 2.62552 2.79114 2.83287 3.16250 3.35797 3.43761 3.57318 3.63100 3.77456 3.95943 4.01765 4.08027 4.08708 4.12250 4.29035 4.32217 4.41705 4.46701 4.52419 4.63167 4.69718 4.74187 4.85084 4.93032 4.98421 5.02684 5.06921 5.10763 5.23007 5.35417 5.58052 5.67274 5.77749 5.83128 5.96305 6.07459 6.29191 6.89721 6.98941 7.13031 8.57962 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.003178 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.216138 B = 8808.794383 C = 9612.509313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.256 1.256 6 H -0.236 1.236 7 C -0.532 4.532 8 H 0.059 0.941 9 S -0.165 6.165 10 C -0.104 4.104 11 C 0.547 3.453 12 O -0.553 6.553 13 N -0.607 5.607 14 C 0.092 3.908 15 C -0.119 4.119 16 C -0.091 4.091 17 H 0.123 0.877 18 C 0.020 3.980 19 N -0.483 5.483 20 C 0.042 3.958 21 H 0.143 0.857 22 C -0.124 4.124 23 C 0.097 3.903 24 N -0.731 5.731 25 C 0.479 3.521 26 O -0.564 6.564 27 C 0.037 3.963 28 C 0.135 3.865 29 H 0.094 0.906 30 H 0.278 0.722 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.411 0.589 44 H 0.075 0.925 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.410 -16.460 -7.181 30.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.160 1.160 7 C -0.680 4.680 8 H 0.077 0.923 9 S 0.061 5.939 10 C -0.255 4.255 11 C 0.335 3.665 12 O -0.431 6.431 13 N -0.342 5.342 14 C -0.031 4.031 15 C -0.157 4.157 16 C -0.110 4.110 17 H 0.141 0.859 18 C -0.108 4.108 19 N -0.207 5.207 20 C -0.071 4.071 21 H 0.161 0.839 22 C -0.162 4.162 23 C -0.026 4.026 24 N -0.386 5.386 25 C 0.265 3.735 26 O -0.443 6.443 27 C -0.091 4.091 28 C 0.031 3.969 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.146 0.854 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.249 0.751 44 H 0.094 0.906 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 25.476 -15.226 -6.699 30.426 hybrid contribution -2.675 -0.257 -0.960 2.853 sum 22.801 -15.483 -7.658 28.605 Atomic orbital electron populations 1.70022 1.07337 1.29128 1.48939 1.25572 0.95291 1.02285 0.92700 0.85858 0.80705 0.79441 0.80313 1.18581 1.18020 1.16013 1.22445 0.90196 0.96711 1.58639 0.92260 1.84594 1.06487 1.05258 1.97551 1.23211 0.95613 1.00048 1.06616 1.19621 0.89422 0.81832 0.75610 1.90667 1.59146 1.42679 1.50651 1.48253 1.08000 1.04955 1.72970 1.22322 0.94629 0.83463 1.02644 1.22558 0.93014 0.98156 1.01948 1.22594 0.95642 0.91788 1.00964 0.85851 1.23316 0.97626 0.91880 0.97933 1.65102 1.36700 1.04959 1.13909 1.22893 0.94943 1.02205 0.87038 0.83949 1.22804 1.03905 0.94572 0.94907 1.22366 0.85815 0.96300 0.98131 1.46543 1.24546 1.39325 1.28162 1.22487 0.88958 0.79542 0.82559 1.90643 1.42635 1.38571 1.72489 1.23395 0.92817 0.96768 0.96170 1.22449 0.80853 0.96250 0.97370 0.88768 0.91257 0.88078 0.87217 0.91239 0.89320 0.91403 0.86791 0.87821 0.90367 0.91063 0.85432 0.89196 0.87733 0.75094 0.90636 0.95585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.52 13.97 21.65 0.30 -56.22 16 2 C 0.05 2.80 5.50 84.86 0.47 3.27 16 3 Si 0.92 45.42 27.74 68.60 1.90 47.32 16 4 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 7 C -0.53 -31.82 10.04 67.95 0.68 -31.13 16 8 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 9 S -0.17 -8.65 18.55 -56.49 -1.05 -9.70 16 10 C -0.10 -4.31 5.18 71.24 0.37 -3.94 16 11 C 0.55 21.01 7.64 87.66 0.67 21.68 16 12 O -0.55 -24.79 15.83 -3.01 -0.05 -24.83 16 13 N -0.61 -17.88 2.92 -787.33 -2.30 -20.18 16 14 C 0.09 2.09 6.59 86.69 0.57 2.66 16 15 C -0.12 -2.18 6.48 31.24 0.20 -1.98 16 16 C -0.09 -1.60 3.85 -9.67 -0.04 -1.64 16 17 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 18 C 0.02 0.34 5.96 86.30 0.51 0.85 16 19 N -0.48 -9.21 5.36 -859.20 -4.61 -13.82 16 20 C 0.04 0.65 3.11 44.90 0.14 0.79 16 21 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 22 C -0.12 -1.39 6.67 31.65 0.21 -1.17 16 23 C 0.10 0.91 7.78 86.83 0.68 1.58 16 24 N -0.73 -11.80 6.25 -459.48 -2.87 -14.67 16 25 C 0.48 10.15 6.10 87.86 0.54 10.69 16 26 O -0.56 -15.94 14.18 -3.04 -0.04 -15.99 16 27 C 0.04 0.96 4.53 86.71 0.39 1.36 16 28 C 0.13 3.36 3.91 46.25 0.18 3.54 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.10 4.03 7.85 -2.39 -0.02 4.01 16 32 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 33 H 0.07 1.69 7.57 -2.39 -0.02 1.67 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.59 6.43 -2.38 -0.02 1.57 16 36 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.08 1.65 4.16 -2.39 -0.01 1.64 16 39 H 0.07 1.14 6.32 -2.39 -0.02 1.13 16 40 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.41 6.25 8.96 -92.71 -0.83 5.41 16 44 H 0.08 2.17 7.14 -2.39 -0.02 2.15 16 45 H 0.03 0.81 6.31 -2.39 -0.02 0.80 16 Total: -1.00 -79.59 361.59 -2.98 -82.57 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.16 Total: 18.95 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.57 Total: 6.56 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -9.48 Total: -104.89 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.09 Total: -40.82 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.05 Total: -9.70 kcal Total: -79.59 -2.98 -82.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186917139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.070 kcal (2) G-P(sol) polarization free energy of solvation -79.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds