Wall clock time and date at job start Tue Mar 31 2020 22:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00148 * 2 1 4 4 H 1.48503 * 109.46808 * 240.00214 * 3 2 1 5 5 H 1.48497 * 109.47031 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47170 * 119.99981 * 3 2 1 7 7 C 1.37881 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99970 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99757 * 359.97438 * 7 2 1 10 10 O 1.42094 * 106.40169 * 66.46069 * 9 7 2 11 11 O 1.42105 * 106.40134 * 293.54100 * 9 7 2 12 12 N 1.65594 * 107.21723 * 180.02562 * 9 7 2 13 13 C 1.46508 * 120.00298 * 64.99913 * 12 9 7 14 14 C 1.52996 * 109.47482 * 164.99855 * 13 12 9 15 15 N 1.46898 * 109.47287 * 180.02562 * 14 13 12 16 16 C 1.46961 * 110.99861 * 169.99841 * 15 14 13 17 17 C 1.53049 * 109.36181 * 183.18775 * 16 15 14 18 18 N 1.46965 * 109.36659 * 301.60325 * 17 16 15 19 19 C 1.39677 * 110.99759 * 183.18867 * 18 17 16 20 20 C 1.38912 * 120.07048 * 179.97438 * 19 18 17 21 21 C 1.38099 * 119.92393 * 180.02562 * 20 19 18 22 22 C 1.38285 * 120.07607 * 0.02562 * 21 20 19 23 23 C 1.38288 * 120.14912 * 359.97438 * 22 21 20 24 24 C 1.38107 * 120.07582 * 0.02562 * 23 22 21 25 25 C 1.46955 * 110.87927 * 59.32047 * 18 17 16 26 26 C 1.46950 * 111.00121 * 293.80252 * 15 14 13 27 27 H 0.96996 * 119.99850 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00337 * 244.99932 * 12 9 7 29 29 H 1.09001 * 109.46346 * 44.99968 * 13 12 9 30 30 H 1.09001 * 109.46994 * 285.00219 * 13 12 9 31 31 H 1.09001 * 109.47172 * 60.00106 * 14 13 12 32 32 H 1.09001 * 109.47303 * 300.00174 * 14 13 12 33 33 H 1.08998 * 109.48396 * 63.22463 * 16 15 14 34 34 H 1.08992 * 109.48955 * 303.15338 * 16 15 14 35 35 H 1.09002 * 109.49137 * 181.63280 * 17 16 15 36 36 H 1.09007 * 109.49063 * 61.56507 * 17 16 15 37 37 H 1.08001 * 120.03609 * 0.02562 * 20 19 18 38 38 H 1.07995 * 119.96581 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.92755 * 179.72532 * 22 21 20 40 40 H 1.07997 * 119.96260 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.03841 * 180.02562 * 24 23 22 42 42 H 1.09006 * 109.48950 * 60.64738 * 25 18 17 43 43 H 1.09000 * 109.48705 * 180.71100 * 25 18 17 44 44 H 1.08998 * 109.48829 * 296.77675 * 26 15 14 45 45 H 1.09002 * 109.48906 * 56.83876 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2495 12 7 2.2483 -3.9353 -0.0005 13 6 3.1395 -4.1088 1.1493 14 6 3.8048 -5.4846 1.0761 15 7 4.6978 -5.6587 2.2293 16 6 5.1709 -7.0469 2.3242 17 6 6.0318 -7.2049 3.5797 18 7 7.1631 -6.2691 3.5158 19 6 8.0122 -6.4347 4.6125 20 6 9.1464 -5.6429 4.7404 21 6 9.9841 -5.8096 5.8256 22 6 9.6952 -6.7637 6.7840 23 6 8.5669 -7.5536 6.6596 24 6 7.7249 -7.3922 5.5769 25 6 6.6900 -4.8810 3.4210 26 6 5.8291 -4.7230 2.1655 27 1 -0.4850 0.8400 -0.0004 28 1 2.3172 -4.5325 -0.7619 29 1 2.5623 -4.0330 2.0709 30 1 3.9055 -3.3335 1.1355 31 1 4.3819 -5.5605 0.1545 32 1 3.0387 -6.2599 1.0899 33 1 5.7648 -7.2896 1.4431 34 1 4.3152 -7.7194 2.3830 35 1 6.4076 -8.2265 3.6368 36 1 5.4303 -6.9884 4.4627 37 1 9.3728 -4.8978 3.9921 38 1 10.8663 -5.1947 5.9255 39 1 10.3543 -6.8951 7.6293 40 1 8.3444 -8.2981 7.4097 41 1 6.8438 -8.0091 5.4807 42 1 6.0959 -4.6383 4.3021 43 1 7.5456 -4.2084 3.3623 44 1 6.4305 -4.9393 1.2826 45 1 5.4532 -3.7014 2.1084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:56 Heat of formation + Delta-G solvation = -72.403896 kcal Electronic energy + Delta-G solvation = -26898.775895 eV Core-core repulsion = 23041.479312 eV Total energy + Delta-G solvation = -3857.296583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.34543 -39.39912 -37.45902 -37.11779 -36.12268 -35.38773 -35.07420 -32.60492 -31.39124 -31.25313 -28.93186 -28.24019 -26.41397 -25.17740 -23.37232 -22.58962 -22.28295 -21.02532 -20.73979 -19.37457 -18.65832 -18.16815 -17.29526 -16.98275 -16.72672 -16.38493 -16.31450 -16.11540 -15.92558 -15.66634 -15.50793 -15.00353 -14.96479 -14.73397 -14.49990 -14.32598 -13.96857 -13.48870 -13.32869 -13.17651 -12.98409 -12.94410 -12.60267 -12.56688 -12.48472 -12.39030 -12.32893 -12.31059 -12.15807 -12.10289 -11.77395 -11.62150 -11.21875 -10.99285 -10.66429 -10.15494 -9.82954 -9.36865 -8.78610 -8.73666 -7.46331 0.36510 0.47829 0.51534 1.35500 1.37500 1.50252 2.21676 2.59535 2.62557 2.73203 2.99798 3.16999 3.72617 3.76423 3.82226 3.94848 4.09032 4.10300 4.11684 4.25410 4.32871 4.34992 4.38344 4.47010 4.52747 4.58494 4.59812 4.63182 4.73620 4.79177 4.82307 4.88056 4.89380 4.99651 5.05639 5.14966 5.17087 5.32766 5.33155 5.53824 5.68643 5.83490 5.90768 5.95341 6.00772 6.09006 6.37110 6.41891 6.80159 8.22587 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.002351 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.790953 B =11907.921482 C =13023.855846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.069 3.931 3 Si 0.990 3.010 4 H -0.251 1.251 5 H -0.266 1.266 6 H -0.249 1.249 7 C -1.038 5.038 8 H 0.121 0.879 9 S 2.724 3.276 10 O -1.045 7.045 11 O -1.043 7.043 12 N -1.120 6.120 13 C 0.125 3.875 14 C 0.061 3.939 15 N -0.548 5.548 16 C 0.058 3.942 17 C 0.056 3.944 18 N -0.497 5.497 19 C 0.096 3.904 20 C -0.155 4.155 21 C -0.102 4.102 22 C -0.156 4.156 23 C -0.102 4.102 24 C -0.183 4.183 25 C 0.066 3.934 26 C 0.048 3.952 27 H 0.298 0.702 28 H 0.416 0.584 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.127 0.873 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.043 0.957 43 H 0.095 0.905 44 H 0.048 0.952 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.240 -14.025 10.461 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.173 1.173 7 C -1.172 5.172 8 H 0.139 0.861 9 S 2.824 3.176 10 O -1.035 7.035 11 O -1.033 7.033 12 N -0.880 5.880 13 C -0.002 4.002 14 C -0.068 4.068 15 N -0.274 5.274 16 C -0.070 4.070 17 C -0.071 4.071 18 N -0.213 5.213 19 C -0.001 4.001 20 C -0.175 4.175 21 C -0.121 4.121 22 C -0.174 4.174 23 C -0.120 4.120 24 C -0.204 4.204 25 C -0.060 4.060 26 C -0.080 4.080 27 H 0.108 0.892 28 H 0.250 0.750 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.061 0.939 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.027 -13.970 10.559 26.603 hybrid contribution 0.463 0.825 -0.585 1.112 sum 20.490 -13.145 9.974 26.308 Atomic orbital electron populations 1.69987 1.08783 1.32348 1.41450 1.26017 0.95363 1.05400 0.87601 0.85167 0.78766 0.74560 0.80722 1.17483 1.19011 1.17259 1.30862 1.07162 1.12523 1.66635 0.86103 0.99765 0.72501 0.73924 0.71404 1.93312 1.74827 1.88425 1.46908 1.93308 1.74551 1.88228 1.47218 1.55278 1.55130 1.49834 1.27790 1.21158 0.92874 0.98397 0.87732 1.22143 0.96204 0.96336 0.92109 1.62030 1.17892 1.05634 1.41874 1.22237 0.98555 0.89000 0.97182 1.22371 0.90030 0.96901 0.97762 1.59312 1.17786 1.06318 1.37837 1.19170 0.94607 0.97057 0.89273 1.20996 0.94850 1.01680 1.00001 1.21311 0.99312 0.97941 0.93506 1.21400 0.98512 0.97098 1.00437 1.21318 0.94302 0.99076 0.97328 1.21526 1.01940 1.02035 0.94857 1.22267 0.98433 0.87713 0.97552 1.22326 0.90935 0.97604 0.97112 0.89156 0.75036 0.91869 0.91626 0.92654 0.89184 0.93602 0.88457 0.88264 0.93140 0.85473 0.84117 0.84265 0.84253 0.84819 0.93906 0.88628 0.93334 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.37 13.19 21.45 0.28 -53.09 16 2 C 0.07 3.82 5.46 84.66 0.46 4.28 16 3 Si 0.99 40.91 29.54 68.60 2.03 42.93 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 6 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 7 C -1.04 -56.28 9.72 67.74 0.66 -55.62 16 8 H 0.12 5.82 7.81 -2.91 -0.02 5.80 16 9 S 2.72 144.84 5.02 -56.49 -0.28 144.55 16 10 O -1.04 -62.06 18.02 -128.00 -2.31 -64.36 16 11 O -1.04 -62.27 17.49 -128.00 -2.24 -64.51 16 12 N -1.12 -42.54 6.00 -187.48 -1.12 -43.67 16 13 C 0.13 4.06 6.16 86.38 0.53 4.59 16 14 C 0.06 1.46 5.10 86.30 0.44 1.90 16 15 N -0.55 -12.18 4.71 -895.75 -4.22 -16.40 16 16 C 0.06 1.03 5.61 86.31 0.48 1.51 16 17 C 0.06 0.96 4.29 86.31 0.37 1.33 16 18 N -0.50 -9.54 4.75 -694.75 -3.30 -12.84 16 19 C 0.10 1.84 5.64 38.21 0.22 2.05 16 20 C -0.16 -2.73 9.19 22.40 0.21 -2.52 16 21 C -0.10 -1.51 10.04 22.25 0.22 -1.29 16 22 C -0.16 -2.16 10.04 22.29 0.22 -1.94 16 23 C -0.10 -1.49 10.04 22.25 0.22 -1.27 16 24 C -0.18 -3.12 8.82 22.40 0.20 -2.92 16 25 C 0.07 1.30 5.38 86.31 0.46 1.76 16 26 C 0.05 1.02 5.41 86.31 0.47 1.49 16 27 H 0.30 16.04 8.31 -92.71 -0.77 15.27 16 28 H 0.42 13.22 8.65 -96.75 -0.84 12.38 16 29 H 0.06 2.32 7.75 -2.39 -0.02 2.30 16 30 H 0.07 2.03 6.49 -2.39 -0.02 2.02 16 31 H 0.06 1.18 8.12 -2.39 -0.02 1.16 16 32 H 0.09 2.01 8.03 -2.39 -0.02 1.99 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 1.48 8.07 -2.39 -0.02 1.46 16 35 H 0.10 1.39 7.17 -2.39 -0.02 1.38 16 36 H 0.05 0.93 7.58 -2.38 -0.02 0.91 16 37 H 0.13 2.03 7.19 -2.91 -0.02 2.01 16 38 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 39 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.13 1.96 5.81 -2.91 -0.02 1.94 16 42 H 0.04 0.94 8.14 -2.38 -0.02 0.93 16 43 H 0.10 1.65 6.82 -2.39 -0.02 1.64 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.09 1.94 6.34 -2.39 -0.02 1.93 16 Total: -1.00 -76.88 373.68 -5.83 -82.72 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.17 Total: 31.30 kcal Atomic # 6 Polarization: -51.80 SS G_CDS: 5.17 Total: -46.64 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -8.36 Total: -125.99 kcal Atomic # 8 Polarization: -124.33 SS G_CDS: -4.54 Total: -128.87 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 144.84 SS G_CDS: -0.28 Total: 144.55 kcal Total: -76.88 -5.83 -82.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.312 kcal (2) G-P(sol) polarization free energy of solvation -76.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds