Wall clock time and date at job start Tue Mar 31 2020 22:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00428 * 2 1 4 4 H 1.48499 * 109.47133 * 269.99579 * 3 2 1 5 5 H 1.48507 * 109.47240 * 29.99509 * 3 2 1 6 6 H 1.48503 * 109.47474 * 149.99454 * 3 2 1 7 7 C 1.37877 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99958 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00209 * 180.02562 * 7 2 1 10 10 O 1.42103 * 106.40210 * 66.45874 * 9 7 2 11 11 O 1.42097 * 106.40318 * 293.54211 * 9 7 2 12 12 N 1.65600 * 107.22084 * 179.97438 * 9 7 2 13 13 C 1.46496 * 119.99885 * 64.99952 * 12 9 7 14 14 C 1.52999 * 109.47313 * 165.00107 * 13 12 9 15 15 C 1.53123 * 109.52377 * 65.32957 * 14 13 12 16 16 C 1.53034 * 109.27992 * 177.57276 * 15 14 13 17 17 N 1.46847 * 109.51345 * 300.80438 * 16 15 14 18 18 C 1.46895 * 110.99982 * 185.84805 * 17 16 15 19 19 C 1.50700 * 109.47354 * 169.99549 * 18 17 16 20 20 C 1.38646 * 120.79370 * 269.71696 * 19 18 17 21 21 C 1.38208 * 119.16412 * 179.75221 * 20 19 18 22 22 N 1.31866 * 120.75858 * 0.53600 * 21 20 19 23 23 C 1.31873 * 121.73284 * 359.73720 * 22 21 20 24 24 C 1.38206 * 120.76049 * 359.97438 * 23 22 21 25 25 C 1.46843 * 111.20124 * 61.74903 * 17 16 15 26 26 C 1.53042 * 109.52278 * 298.25596 * 25 17 16 27 27 H 0.97001 * 119.99456 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00404 * 244.99911 * 12 9 7 29 29 H 1.08998 * 109.47107 * 45.00165 * 13 12 9 30 30 H 1.09003 * 109.47426 * 285.00046 * 13 12 9 31 31 H 1.09003 * 109.57426 * 305.16170 * 14 13 12 32 32 H 1.08997 * 109.51083 * 57.61870 * 15 14 13 33 33 H 1.08998 * 109.48980 * 297.50802 * 15 14 13 34 34 H 1.09002 * 109.46271 * 180.79158 * 16 15 14 35 35 H 1.08994 * 109.46242 * 60.81457 * 16 15 14 36 36 H 1.09000 * 109.47118 * 289.99436 * 18 17 16 37 37 H 1.09003 * 109.47534 * 49.99526 * 18 17 16 38 38 H 1.07997 * 120.41403 * 0.02562 * 20 19 18 39 39 H 1.07996 * 119.61413 * 180.29629 * 21 20 19 40 40 H 1.07993 * 119.61662 * 180.02562 * 23 22 21 41 41 H 1.07997 * 120.41541 * 180.02562 * 24 23 22 42 42 H 1.08993 * 109.46313 * 58.27251 * 25 17 16 43 43 H 1.09000 * 109.46480 * 178.25361 * 25 17 16 44 44 H 1.08997 * 109.50758 * 179.11703 * 26 25 17 45 45 H 1.08998 * 109.50897 * 299.20258 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 16 3.7665 -1.1942 0.0012 10 8 4.1673 -0.6494 1.2510 11 8 4.1682 -0.6500 -1.2484 12 7 4.2566 -2.7760 0.0025 13 6 3.9617 -3.6351 -1.1469 14 6 4.8204 -4.8992 -1.0725 15 6 4.4144 -5.7222 0.1533 16 6 5.2343 -7.0138 0.1888 17 7 4.9938 -7.7815 -1.0397 18 6 5.6558 -9.0915 -0.9800 19 6 5.1918 -9.9419 -2.1344 20 6 4.0848 -10.7670 -2.0082 21 6 3.6857 -11.5287 -3.0901 22 7 4.3506 -11.4845 -4.2280 23 6 5.4109 -10.7157 -4.3823 24 6 5.8652 -9.9219 -3.3462 25 6 5.4199 -7.0302 -2.2273 26 6 4.6057 -5.7388 -2.3349 27 1 -0.4849 0.8401 -0.0004 28 1 4.7390 -3.1337 0.7642 29 1 4.1850 -3.0980 -2.0687 30 1 2.9073 -3.9109 -1.1334 31 1 5.8718 -4.6223 -0.9936 32 1 3.3537 -5.9658 0.0931 33 1 4.6050 -5.1451 1.0581 34 1 4.9377 -7.6087 1.0527 35 1 6.2940 -6.7695 0.2628 36 1 6.7357 -8.9559 -1.0396 37 1 5.4027 -9.5841 -0.0411 38 1 3.5386 -10.8106 -1.0775 39 1 2.8215 -12.1704 -3.0014 40 1 5.9296 -10.7057 -5.3295 41 1 6.7339 -9.2941 -3.4789 42 1 6.4787 -6.7859 -2.1419 43 1 5.2578 -7.6368 -3.1183 44 1 4.9329 -5.1738 -3.2076 45 1 3.5480 -5.9826 -2.4348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193003121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:38 Heat of formation + Delta-G solvation = -49.729264 kcal Electronic energy + Delta-G solvation = -27026.159568 eV Core-core repulsion = 23169.846231 eV Total energy + Delta-G solvation = -3856.313337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.62045 -39.24297 -36.15423 -35.55018 -34.40667 -33.68906 -33.01159 -31.79316 -31.54176 -30.79573 -27.65247 -26.39208 -25.07950 -23.90546 -23.15813 -22.33624 -21.39165 -19.83455 -19.01325 -17.46859 -16.98576 -16.69947 -16.64276 -16.26472 -15.95759 -15.63768 -15.11499 -14.95786 -14.52179 -14.39652 -14.03013 -13.98674 -13.86154 -13.48681 -13.29323 -13.18800 -12.89750 -12.60933 -12.47705 -12.36113 -12.01491 -11.65756 -11.56414 -11.36035 -11.29305 -10.89630 -10.63091 -10.60551 -10.49074 -10.43496 -10.34268 -9.93108 -9.80832 -9.75218 -9.42716 -9.20433 -9.19779 -8.60423 -8.53692 -6.78955 -5.32260 0.83593 0.91532 2.11192 3.08199 3.18780 3.27960 3.38993 3.79931 3.96475 4.16505 4.25568 4.34535 4.39977 4.60440 4.65551 4.73401 4.76816 4.79993 4.83375 5.01707 5.06786 5.15273 5.24663 5.28081 5.35482 5.37425 5.41921 5.47996 5.57780 5.65913 5.66143 5.71907 5.83931 5.93644 6.01770 6.08405 6.11572 6.16198 6.27511 6.39256 6.44725 6.64435 6.77426 6.82670 7.49227 7.68035 7.75942 8.22693 8.72473 10.33475 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.002235 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.549915 B =12522.707975 C =12789.224801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.152 3.848 3 Si 0.803 3.197 4 H -0.247 1.247 5 H -0.256 1.256 6 H -0.220 1.220 7 C -1.014 5.014 8 H 0.121 0.879 9 S 2.677 3.323 10 O -1.011 7.011 11 O -1.013 7.013 12 N -1.125 6.125 13 C 0.131 3.869 14 C -0.095 4.095 15 C -0.114 4.114 16 C 0.058 3.942 17 N -0.531 5.531 18 C 0.091 3.909 19 C -0.031 4.031 20 C -0.152 4.152 21 C 0.097 3.903 22 N -0.488 5.488 23 C 0.097 3.903 24 C -0.169 4.169 25 C 0.053 3.947 26 C -0.112 4.112 27 H 0.280 0.720 28 H 0.403 0.597 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.131 0.869 42 H 0.033 0.967 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.100 -21.513 -3.527 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.067 4.067 3 Si 0.623 3.377 4 H -0.171 1.171 5 H -0.180 1.180 6 H -0.142 1.142 7 C -1.148 5.148 8 H 0.139 0.861 9 S 2.778 3.222 10 O -1.001 7.001 11 O -1.003 7.003 12 N -0.881 5.881 13 C 0.004 3.996 14 C -0.116 4.116 15 C -0.152 4.152 16 C -0.069 4.069 17 N -0.256 5.256 18 C -0.037 4.037 19 C -0.039 4.039 20 C -0.172 4.172 21 C -0.060 4.060 22 N -0.198 5.198 23 C -0.060 4.060 24 C -0.189 4.189 25 C -0.075 4.075 26 C -0.150 4.150 27 H 0.091 0.909 28 H 0.235 0.765 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.171 0.829 41 H 0.149 0.851 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.637 -21.197 -4.422 24.125 hybrid contribution 0.817 0.951 1.112 1.676 sum 11.454 -20.246 -3.310 23.496 Atomic orbital electron populations 1.69993 1.06607 1.28992 1.39760 1.24435 0.94780 0.98833 0.88640 0.87849 0.83557 0.84540 0.81770 1.17064 1.18000 1.14237 1.30460 1.15704 1.02097 1.66576 0.86112 1.01271 0.77271 0.70443 0.73188 1.93471 1.85536 1.76014 1.45095 1.93399 1.85035 1.76196 1.45657 1.55470 1.74287 1.31470 1.26860 1.21141 0.98996 0.90465 0.88970 1.21432 1.00157 0.94627 0.95336 1.21675 1.01138 0.94204 0.98150 1.22125 0.98180 0.95087 0.91557 1.61930 1.58116 1.02375 1.03202 1.21049 0.96480 0.89754 0.96401 1.20173 0.94256 0.94598 0.94901 1.22046 0.97005 0.97292 1.00857 1.22786 0.98192 0.96748 0.88236 1.67670 1.07195 1.19841 1.25068 1.22731 0.92746 0.91852 0.98664 1.22082 1.01715 1.01129 0.93985 1.22201 0.96978 0.95065 0.93228 1.21603 1.01564 0.94379 0.97474 0.90950 0.76490 0.90623 0.91690 0.90896 0.90394 0.90915 0.90613 0.94790 0.93572 0.89424 0.84657 0.82776 0.82872 0.85095 0.94844 0.90489 0.90924 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.84 13.96 55.43 0.77 -23.07 16 2 C 0.15 4.38 5.47 -17.82 -0.10 4.28 16 3 Si 0.80 20.64 26.54 -169.99 -4.51 16.13 16 4 H -0.25 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.22 -5.76 5.61 56.52 0.32 -5.44 16 7 C -1.01 -28.00 10.26 30.60 0.31 -27.68 16 8 H 0.12 3.36 8.06 -52.48 -0.42 2.94 16 9 S 2.68 65.60 4.24 -107.50 -0.46 65.14 16 10 O -1.01 -26.82 16.02 -57.17 -0.92 -27.74 16 11 O -1.01 -26.71 16.31 -57.17 -0.93 -27.64 16 12 N -1.12 -20.53 5.88 -10.62 -0.06 -20.59 16 13 C 0.13 2.08 5.62 -4.04 -0.02 2.05 16 14 C -0.10 -1.14 2.36 -90.49 -0.21 -1.35 16 15 C -0.11 -1.24 5.22 -26.65 -0.14 -1.38 16 16 C 0.06 0.52 5.46 -3.84 -0.02 0.50 16 17 N -0.53 -4.80 4.65 -236.12 -1.10 -5.90 16 18 C 0.09 0.67 5.16 -4.98 -0.03 0.64 16 19 C -0.03 -0.24 4.91 -104.32 -0.51 -0.76 16 20 C -0.15 -1.19 9.82 -39.44 -0.39 -1.58 16 21 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 22 N -0.49 -4.88 10.36 -13.25 -0.14 -5.02 16 23 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 24 C -0.17 -1.27 8.03 -39.44 -0.32 -1.59 16 25 C 0.05 0.49 5.19 -3.83 -0.02 0.47 16 26 C -0.11 -1.18 5.38 -26.64 -0.14 -1.33 16 27 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.40 6.26 7.46 -34.47 -0.26 6.00 16 29 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.78 6.99 -51.93 -0.36 0.42 16 34 H 0.08 0.60 8.02 -51.93 -0.42 0.19 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.09 0.56 7.95 -51.93 -0.41 0.15 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 0.77 7.99 -52.49 -0.42 0.35 16 42 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.69 5.78 -51.93 -0.30 0.39 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -34.23 370.54 -10.59 -44.83 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.86 Total: 4.77 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -1.98 Total: -26.50 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.52 Total: -54.57 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -1.85 Total: -55.38 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.51 Total: 16.13 kcal Atomic # 16 Polarization: 65.60 SS G_CDS: -0.46 Total: 65.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.23 -10.59 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.904 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds