Wall clock time and date at job start Tue Mar 31 2020 22:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00428 * 2 1 4 4 H 1.48499 * 109.47133 * 269.99579 * 3 2 1 5 5 H 1.48507 * 109.47240 * 29.99509 * 3 2 1 6 6 H 1.48503 * 109.47474 * 149.99454 * 3 2 1 7 7 C 1.37877 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99958 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00209 * 180.02562 * 7 2 1 10 10 O 1.42103 * 106.40210 * 66.45874 * 9 7 2 11 11 O 1.42097 * 106.40318 * 293.54211 * 9 7 2 12 12 N 1.65600 * 107.22084 * 179.97438 * 9 7 2 13 13 C 1.46496 * 119.99885 * 64.99952 * 12 9 7 14 14 C 1.52999 * 109.47313 * 165.00107 * 13 12 9 15 15 C 1.53123 * 109.52377 * 65.32957 * 14 13 12 16 16 C 1.53034 * 109.27992 * 177.57276 * 15 14 13 17 17 N 1.46847 * 109.51345 * 300.80438 * 16 15 14 18 18 C 1.46895 * 110.99982 * 185.84805 * 17 16 15 19 19 C 1.50700 * 109.47354 * 169.99549 * 18 17 16 20 20 C 1.38646 * 120.79370 * 269.71696 * 19 18 17 21 21 C 1.38208 * 119.16412 * 179.75221 * 20 19 18 22 22 N 1.31866 * 120.75858 * 0.53600 * 21 20 19 23 23 C 1.31873 * 121.73284 * 359.73720 * 22 21 20 24 24 C 1.38206 * 120.76049 * 359.97438 * 23 22 21 25 25 C 1.46843 * 111.20124 * 61.74903 * 17 16 15 26 26 C 1.53042 * 109.52278 * 298.25596 * 25 17 16 27 27 H 0.97001 * 119.99456 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00404 * 244.99911 * 12 9 7 29 29 H 1.08998 * 109.47107 * 45.00165 * 13 12 9 30 30 H 1.09003 * 109.47426 * 285.00046 * 13 12 9 31 31 H 1.09003 * 109.57426 * 305.16170 * 14 13 12 32 32 H 1.08997 * 109.51083 * 57.61870 * 15 14 13 33 33 H 1.08998 * 109.48980 * 297.50802 * 15 14 13 34 34 H 1.09002 * 109.46271 * 180.79158 * 16 15 14 35 35 H 1.08994 * 109.46242 * 60.81457 * 16 15 14 36 36 H 1.09000 * 109.47118 * 289.99436 * 18 17 16 37 37 H 1.09003 * 109.47534 * 49.99526 * 18 17 16 38 38 H 1.07997 * 120.41403 * 0.02562 * 20 19 18 39 39 H 1.07996 * 119.61413 * 180.29629 * 21 20 19 40 40 H 1.07993 * 119.61662 * 180.02562 * 23 22 21 41 41 H 1.07997 * 120.41541 * 180.02562 * 24 23 22 42 42 H 1.08993 * 109.46313 * 58.27251 * 25 17 16 43 43 H 1.09000 * 109.46480 * 178.25361 * 25 17 16 44 44 H 1.08997 * 109.50758 * 179.11703 * 26 25 17 45 45 H 1.08998 * 109.50897 * 299.20258 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 16 3.7665 -1.1942 0.0012 10 8 4.1673 -0.6494 1.2510 11 8 4.1682 -0.6500 -1.2484 12 7 4.2566 -2.7760 0.0025 13 6 3.9617 -3.6351 -1.1469 14 6 4.8204 -4.8992 -1.0725 15 6 4.4144 -5.7222 0.1533 16 6 5.2343 -7.0138 0.1888 17 7 4.9938 -7.7815 -1.0397 18 6 5.6558 -9.0915 -0.9800 19 6 5.1918 -9.9419 -2.1344 20 6 4.0848 -10.7670 -2.0082 21 6 3.6857 -11.5287 -3.0901 22 7 4.3506 -11.4845 -4.2280 23 6 5.4109 -10.7157 -4.3823 24 6 5.8652 -9.9219 -3.3462 25 6 5.4199 -7.0302 -2.2273 26 6 4.6057 -5.7388 -2.3349 27 1 -0.4849 0.8401 -0.0004 28 1 4.7390 -3.1337 0.7642 29 1 4.1850 -3.0980 -2.0687 30 1 2.9073 -3.9109 -1.1334 31 1 5.8718 -4.6223 -0.9936 32 1 3.3537 -5.9658 0.0931 33 1 4.6050 -5.1451 1.0581 34 1 4.9377 -7.6087 1.0527 35 1 6.2940 -6.7695 0.2628 36 1 6.7357 -8.9559 -1.0396 37 1 5.4027 -9.5841 -0.0411 38 1 3.5386 -10.8106 -1.0775 39 1 2.8215 -12.1704 -3.0014 40 1 5.9296 -10.7057 -5.3295 41 1 6.7339 -9.2941 -3.4789 42 1 6.4787 -6.7859 -2.1419 43 1 5.2578 -7.6368 -3.1183 44 1 4.9329 -5.1738 -3.2076 45 1 3.5480 -5.9826 -2.4348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193003121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:37 Heat of formation + Delta-G solvation = -76.019045 kcal Electronic energy + Delta-G solvation = -27027.299578 eV Core-core repulsion = 23169.846231 eV Total energy + Delta-G solvation = -3857.453348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.22309 -40.03115 -37.69458 -37.08968 -36.47156 -35.18222 -34.62692 -32.68594 -32.13613 -31.57076 -28.61170 -28.44589 -26.01375 -24.54112 -23.89160 -23.15756 -22.14088 -21.14223 -20.54032 -19.43037 -18.57947 -17.59714 -17.45358 -17.26896 -16.88792 -16.84969 -16.50259 -15.77275 -15.73340 -15.54219 -15.26233 -15.18950 -14.93000 -14.72245 -14.56279 -14.33989 -14.14668 -13.74443 -13.42560 -13.29959 -13.18539 -13.12245 -12.88353 -12.72732 -12.65974 -12.54391 -12.22967 -12.08602 -11.87158 -11.62391 -11.33884 -11.30750 -11.27228 -11.13313 -10.55042 -10.37604 -10.19301 -10.00307 -9.24358 -8.95421 -7.50665 0.18413 0.26385 0.32272 1.05770 1.15120 1.22388 1.89819 2.43217 2.61408 2.77301 3.17821 3.33265 3.62343 3.69421 3.72931 3.86485 3.88919 3.91603 4.22513 4.26739 4.28716 4.31415 4.34888 4.45436 4.50196 4.56845 4.62662 4.67789 4.73747 4.81063 4.84888 4.92691 4.95411 4.96201 5.05320 5.09815 5.17225 5.21773 5.33952 5.40309 5.44728 5.53691 5.83978 6.02925 6.12304 6.14721 6.34857 6.55577 7.09057 8.22298 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.002235 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.549915 B =12522.707975 C =12789.224801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.107 3.893 3 Si 0.826 3.174 4 H -0.240 1.240 5 H -0.222 1.222 6 H -0.228 1.228 7 C -1.035 5.035 8 H 0.105 0.895 9 S 2.700 3.300 10 O -1.030 7.030 11 O -1.031 7.031 12 N -1.107 6.107 13 C 0.123 3.877 14 C -0.086 4.086 15 C -0.115 4.115 16 C 0.063 3.937 17 N -0.543 5.543 18 C 0.094 3.906 19 C -0.039 4.039 20 C -0.157 4.157 21 C 0.083 3.917 22 N -0.518 5.518 23 C 0.084 3.916 24 C -0.168 4.168 25 C 0.058 3.942 26 C -0.111 4.111 27 H 0.290 0.710 28 H 0.419 0.581 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.149 0.851 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.149 0.851 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.761 -22.170 -3.244 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.110 4.110 3 Si 0.643 3.357 4 H -0.163 1.163 5 H -0.144 1.144 6 H -0.150 1.150 7 C -1.168 5.168 8 H 0.124 0.876 9 S 2.800 3.200 10 O -1.021 7.021 11 O -1.021 7.021 12 N -0.869 5.869 13 C -0.004 4.004 14 C -0.106 4.106 15 C -0.153 4.153 16 C -0.064 4.064 17 N -0.268 5.268 18 C -0.033 4.033 19 C -0.048 4.048 20 C -0.177 4.177 21 C -0.073 4.073 22 N -0.228 5.228 23 C -0.073 4.073 24 C -0.188 4.188 25 C -0.069 4.069 26 C -0.149 4.149 27 H 0.101 0.899 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.166 0.834 39 H 0.187 0.813 40 H 0.188 0.812 41 H 0.166 0.834 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.270 -21.851 -4.125 25.398 hybrid contribution 0.282 1.044 1.000 1.473 sum 12.553 -20.807 -3.125 24.500 Atomic orbital electron populations 1.70020 1.07517 1.30409 1.40672 1.25184 0.95618 1.01525 0.88643 0.87471 0.82881 0.82794 0.82508 1.16328 1.14427 1.15022 1.30991 1.18184 1.01539 1.66057 0.87633 1.00396 0.75592 0.71766 0.72254 1.93435 1.85213 1.77604 1.45801 1.93372 1.84668 1.77643 1.46371 1.54960 1.73705 1.29826 1.28372 1.21385 0.99688 0.91734 0.87544 1.21373 0.99689 0.92841 0.96684 1.21674 1.00788 0.95308 0.97546 1.22067 0.98209 0.94121 0.92037 1.61884 1.58878 1.03011 1.03057 1.21064 0.96894 0.88679 0.96622 1.20360 0.94350 0.94734 0.95340 1.22240 0.97161 0.97080 1.01207 1.23111 0.98736 0.97283 0.88195 1.67669 1.08217 1.20942 1.26000 1.23097 0.92606 0.91786 0.99775 1.22275 1.02052 1.00911 0.93592 1.22125 0.97089 0.94153 0.93580 1.21591 1.01266 0.95169 0.96915 0.89918 0.74565 0.91358 0.92437 0.89837 0.91754 0.90824 0.89371 0.93844 0.92503 0.88344 0.83373 0.81312 0.81200 0.83353 0.93818 0.90241 0.90438 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.79 13.96 21.45 0.30 -49.49 16 2 C 0.11 6.14 5.47 84.66 0.46 6.60 16 3 Si 0.83 41.19 26.54 68.60 1.82 43.01 16 4 H -0.24 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.22 -9.79 7.11 99.48 0.71 -9.09 16 6 H -0.23 -11.61 5.61 99.48 0.56 -11.05 16 7 C -1.04 -57.81 10.26 67.73 0.69 -57.11 16 8 H 0.11 6.03 8.06 -2.91 -0.02 6.01 16 9 S 2.70 131.14 4.24 -56.49 -0.24 130.90 16 10 O -1.03 -53.85 16.02 -128.00 -2.05 -55.90 16 11 O -1.03 -53.72 16.31 -128.00 -2.09 -55.81 16 12 N -1.11 -39.42 5.88 -187.50 -1.10 -40.52 16 13 C 0.12 3.81 5.62 86.38 0.49 4.29 16 14 C -0.09 -1.90 2.36 -10.71 -0.03 -1.93 16 15 C -0.12 -2.31 5.22 30.65 0.16 -2.15 16 16 C 0.06 0.96 5.46 86.32 0.47 1.43 16 17 N -0.54 -8.46 4.65 -900.96 -4.19 -12.64 16 18 C 0.09 1.13 5.16 85.56 0.44 1.57 16 19 C -0.04 -0.55 4.91 -19.67 -0.10 -0.64 16 20 C -0.16 -2.25 9.82 22.36 0.22 -2.03 16 21 C 0.08 1.34 11.18 84.68 0.95 2.29 16 22 N -0.52 -10.06 10.36 -195.85 -2.03 -12.09 16 23 C 0.08 1.29 11.18 84.68 0.95 2.24 16 24 C -0.17 -2.22 8.03 22.36 0.18 -2.04 16 25 C 0.06 0.93 5.19 86.33 0.45 1.37 16 26 C -0.11 -2.18 5.38 30.65 0.16 -2.02 16 27 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.42 12.34 7.46 -96.75 -0.72 11.62 16 29 H 0.07 2.23 7.75 -2.39 -0.02 2.21 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.44 6.99 -2.39 -0.02 1.43 16 34 H 0.09 1.14 8.02 -2.39 -0.02 1.13 16 35 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.58 8.08 -2.39 -0.02 0.56 16 37 H 0.10 0.97 7.95 -2.39 -0.02 0.95 16 38 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.15 1.36 7.99 -2.91 -0.02 1.33 16 42 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.08 1.25 5.78 -2.39 -0.01 1.23 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -72.49 370.54 -3.96 -76.45 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.12 Total: 24.22 kcal Atomic # 6 Polarization: -53.63 SS G_CDS: 5.50 Total: -48.13 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -7.02 Total: -114.74 kcal Atomic # 8 Polarization: -107.57 SS G_CDS: -4.14 Total: -111.71 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.82 Total: 43.01 kcal Atomic # 16 Polarization: 131.14 SS G_CDS: -0.24 Total: 130.90 kcal Total: -72.49 -3.96 -76.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193003121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.427 kcal (2) G-P(sol) polarization free energy of solvation -72.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds