Wall clock time and date at job start Tue Mar 31 2020 22:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99857 * 2 1 4 4 H 1.48500 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46828 * 300.00080 * 3 2 1 6 6 H 1.48496 * 109.46831 * 59.99691 * 3 2 1 7 7 C 1.37875 * 120.00597 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00271 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99490 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46966 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.46948 * 179.97438 * 10 9 7 12 12 O 1.42095 * 110.54616 * 68.37486 * 11 10 9 13 13 O 1.42099 * 110.54483 * 291.62349 * 11 10 9 14 14 N 1.65597 * 104.44892 * 179.97438 * 11 10 9 15 15 C 1.46505 * 119.99903 * 64.99984 * 14 11 10 16 16 C 1.53119 * 109.51821 * 215.00011 * 15 14 11 17 17 C 1.53044 * 109.27589 * 182.37494 * 16 15 14 18 18 N 1.46847 * 109.51335 * 59.18419 * 17 16 15 19 19 C 1.39166 * 110.99934 * 174.15594 * 18 17 16 20 20 C 1.39471 * 120.86673 * 359.72086 * 19 18 17 21 21 C 1.37895 * 119.06650 * 179.72756 * 20 19 18 22 22 N 1.31994 * 120.84452 * 0.56183 * 21 20 19 23 23 C 1.31996 * 121.90969 * 359.71551 * 22 21 20 24 24 C 1.37894 * 120.84236 * 359.97438 * 23 22 21 25 25 C 1.46847 * 111.20163 * 298.24410 * 18 17 16 26 26 C 1.53041 * 109.51486 * 61.75514 * 25 18 17 27 27 H 0.97001 * 120.00889 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47355 * 60.00024 * 9 7 2 29 29 H 1.09001 * 109.47403 * 299.99859 * 9 7 2 30 30 H 1.08998 * 109.46936 * 59.99924 * 10 9 7 31 31 H 1.08994 * 109.46942 * 299.99543 * 10 9 7 32 32 H 0.97003 * 120.00342 * 244.99883 * 14 11 10 33 33 H 1.08993 * 109.52098 * 335.12277 * 15 14 11 34 34 H 1.09000 * 109.50507 * 62.44159 * 16 15 14 35 35 H 1.08999 * 109.54263 * 302.33092 * 16 15 14 36 36 H 1.09002 * 109.46396 * 179.19729 * 17 16 15 37 37 H 1.08994 * 109.46485 * 299.17654 * 17 16 15 38 38 H 1.08005 * 120.46924 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.58110 * 180.29583 * 21 20 19 40 40 H 1.07998 * 119.58327 * 180.02562 * 23 22 21 41 41 H 1.07994 * 120.46996 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.46836 * 301.74653 * 25 18 17 43 43 H 1.08995 * 109.45748 * 181.76188 * 25 18 17 44 44 H 1.08996 * 109.50341 * 180.87808 * 26 25 18 45 45 H 1.08996 * 109.50165 * 60.75338 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3385 -5.2329 0.0013 12 8 0.6641 -5.4200 -1.2353 13 8 0.6649 -5.4193 1.2386 14 7 2.5207 -6.3926 0.0005 15 6 3.4199 -6.5226 1.1498 16 6 4.8146 -6.9278 0.6648 17 6 5.7337 -7.1198 1.8733 18 7 5.1799 -8.1590 2.7506 19 6 6.0560 -8.4520 3.7915 20 6 7.2819 -7.7960 3.9009 21 6 8.1191 -8.1113 4.9503 22 7 7.7775 -9.0277 5.8368 23 6 6.6291 -9.6744 5.7646 24 6 5.7333 -9.4132 4.7493 25 6 3.8610 -7.7709 3.2667 26 6 2.8860 -7.5983 2.0998 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8905 31 1 2.8720 -3.6043 -0.8895 32 1 2.6178 -6.9857 -0.7608 33 1 3.4796 -5.5696 1.6752 34 1 5.2178 -6.1455 0.0217 35 1 4.7493 -7.8611 0.1055 36 1 6.7239 -7.4222 1.5322 37 1 5.8101 -6.1824 2.4241 38 1 7.5698 -7.0487 3.1762 39 1 9.0683 -7.6050 5.0458 40 1 6.3875 -10.4169 6.5107 41 1 4.7955 -9.9461 4.6958 42 1 3.9462 -6.8302 3.8108 43 1 3.4910 -8.5462 3.9374 44 1 1.9112 -7.2950 2.4818 45 1 2.7898 -8.5422 1.5633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195995665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:57 Heat of formation + Delta-G solvation = -38.935913 kcal Electronic energy + Delta-G solvation = -27133.639567 eV Core-core repulsion = 23277.794265 eV Total energy + Delta-G solvation = -3855.845302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08262 -39.10887 -36.68220 -36.01793 -35.47226 -33.95098 -32.30322 -32.09197 -31.22498 -30.91022 -29.50296 -25.66694 -24.84209 -24.50159 -22.55122 -22.23795 -21.77602 -20.40281 -18.96064 -18.21852 -17.51991 -16.76209 -16.58106 -16.35476 -15.91729 -15.48987 -15.25159 -15.06977 -14.77939 -14.62535 -14.59095 -14.04239 -13.97769 -13.80549 -13.67931 -13.44558 -12.62258 -12.52783 -12.31866 -12.01760 -11.85323 -11.70353 -11.66347 -11.59767 -11.53591 -11.28624 -11.14136 -11.01396 -10.76183 -10.58924 -10.43723 -10.42270 -9.85759 -9.77977 -9.54544 -9.48528 -9.09009 -8.57313 -8.55475 -6.17264 -4.23110 0.71977 0.85453 0.96894 3.03004 3.16810 3.21572 3.29051 3.31952 3.57373 4.14759 4.19408 4.29932 4.32108 4.34673 4.50233 4.57827 4.67438 4.72169 4.78757 4.87494 4.94487 4.96111 5.02070 5.17591 5.18128 5.22749 5.36474 5.40543 5.48934 5.51635 5.53395 5.57833 5.68376 5.73375 5.75314 6.01152 6.11903 6.26260 6.41762 6.51227 6.73678 7.01761 7.24590 7.30505 7.74389 7.75589 8.12133 8.80529 9.42052 10.93768 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.002613 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.698260 B =10711.908995 C =12059.583647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.591 3.409 12 O -0.967 6.967 13 O -0.965 6.965 14 N -1.122 6.122 15 C 0.152 3.848 16 C -0.125 4.125 17 C 0.049 3.951 18 N -0.487 5.487 19 C 0.160 3.840 20 C -0.228 4.228 21 C 0.123 3.877 22 N -0.510 5.510 23 C 0.119 3.881 24 C -0.198 4.198 25 C 0.060 3.940 26 C -0.138 4.138 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.413 0.587 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.138 0.862 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.136 0.864 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.922 -18.621 6.348 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.689 3.311 12 O -0.957 6.957 13 O -0.955 6.955 14 N -0.877 5.877 15 C 0.044 3.956 16 C -0.164 4.164 17 C -0.078 4.078 18 N -0.201 5.201 19 C 0.052 3.948 20 C -0.251 4.251 21 C -0.034 4.034 22 N -0.221 5.221 23 C -0.037 4.037 24 C -0.221 4.221 25 C -0.066 4.066 26 C -0.177 4.177 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.246 0.754 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.156 0.844 39 H 0.171 0.829 40 H 0.173 0.827 41 H 0.154 0.846 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.213 -19.177 6.832 24.270 hybrid contribution 0.629 1.774 -0.744 2.024 sum 13.843 -17.403 6.088 23.056 Atomic orbital electron populations 1.69955 1.06123 1.27153 1.49545 1.25071 0.94971 0.99576 0.94878 0.86421 0.79909 0.83184 0.77815 1.19651 1.20758 1.20775 1.21025 0.93055 0.89753 1.52166 0.92027 1.18966 0.92677 0.90561 0.98915 1.30458 1.13739 1.18212 1.09930 1.05618 0.74713 0.76584 0.74206 1.93557 1.71582 1.85297 1.45284 1.93541 1.71352 1.84941 1.45620 1.55902 1.52678 1.52058 1.27072 1.20762 0.89227 0.99269 0.86329 1.21963 0.93869 1.03260 0.97291 1.22334 0.98865 0.92790 0.93783 1.58777 1.03547 1.41494 1.16313 1.19280 0.92741 0.93472 0.89270 1.22305 0.97017 1.03461 1.02349 1.22602 0.98652 0.92811 0.89360 1.67731 1.18307 1.08376 1.27696 1.22612 0.88745 0.96481 0.95868 1.21818 1.02869 1.00444 0.96931 1.22294 0.86263 1.00753 0.97259 1.22220 0.99336 1.00281 0.95877 0.92533 0.94827 0.94816 0.86537 0.86063 0.75365 0.89724 0.89709 0.90030 0.89289 0.92666 0.84382 0.82861 0.82741 0.84588 0.92900 0.89351 0.88761 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.28 55.43 0.74 -25.37 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.05 9.11 -34.44 -0.31 -14.37 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -10.62 5.90 37.16 0.22 -10.40 16 11 S 2.59 43.13 5.38 -107.50 -0.58 42.56 16 12 O -0.97 -19.26 18.08 -57.54 -1.04 -20.30 16 13 O -0.96 -18.60 17.20 -57.54 -0.99 -19.59 16 14 N -1.12 -12.81 5.37 -4.79 -0.03 -12.84 16 15 C 0.15 1.51 2.62 -67.80 -0.18 1.33 16 16 C -0.12 -0.95 5.63 -26.65 -0.15 -1.10 16 17 C 0.05 0.36 4.17 -3.83 -0.02 0.35 16 18 N -0.49 -4.08 4.70 -170.95 -0.80 -4.88 16 19 C 0.16 1.40 5.65 -83.61 -0.47 0.93 16 20 C -0.23 -1.86 8.88 -39.25 -0.35 -2.20 16 21 C 0.12 1.05 11.17 -17.61 -0.20 0.85 16 22 N -0.51 -5.12 10.36 -13.35 -0.14 -5.26 16 23 C 0.12 1.00 11.17 -17.61 -0.20 0.81 16 24 C -0.20 -1.62 9.25 -39.24 -0.36 -1.99 16 25 C 0.06 0.51 5.26 -3.83 -0.02 0.49 16 26 C -0.14 -1.34 5.70 -26.65 -0.15 -1.49 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.84 7.45 -51.92 -0.39 1.46 16 31 H 0.12 1.96 8.14 -51.93 -0.42 1.53 16 32 H 0.41 3.90 8.80 -34.47 -0.30 3.60 16 33 H 0.08 0.85 7.16 -51.93 -0.37 0.48 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.56 7.01 -51.93 -0.36 0.20 16 37 H 0.06 0.40 7.78 -51.93 -0.40 -0.01 16 38 H 0.14 0.88 5.96 -52.48 -0.31 0.57 16 39 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.14 0.91 7.24 -52.49 -0.38 0.53 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.66 6.78 -51.93 -0.35 0.31 16 44 H 0.09 1.08 7.52 -51.93 -0.39 0.69 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -35.49 375.03 -11.24 -46.73 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.61 Total: 2.21 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -2.42 Total: -24.73 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.23 Total: -48.35 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -2.03 Total: -39.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 43.13 SS G_CDS: -0.58 Total: 42.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.49 -11.24 -46.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195995665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.797 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds