Wall clock time and date at job start Tue Mar 31 2020 22:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86809 * 119.99857 * 2 1 4 4 H 1.48500 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46828 * 300.00080 * 3 2 1 6 6 H 1.48496 * 109.46831 * 59.99691 * 3 2 1 7 7 C 1.37875 * 120.00597 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00271 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99490 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46966 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.46948 * 179.97438 * 10 9 7 12 12 O 1.42095 * 110.54616 * 68.37486 * 11 10 9 13 13 O 1.42099 * 110.54483 * 291.62349 * 11 10 9 14 14 N 1.65597 * 104.44892 * 179.97438 * 11 10 9 15 15 C 1.46505 * 119.99903 * 64.99984 * 14 11 10 16 16 C 1.53119 * 109.51821 * 215.00011 * 15 14 11 17 17 C 1.53044 * 109.27589 * 182.37494 * 16 15 14 18 18 N 1.46847 * 109.51335 * 59.18419 * 17 16 15 19 19 C 1.39166 * 110.99934 * 174.15594 * 18 17 16 20 20 C 1.39471 * 120.86673 * 359.72086 * 19 18 17 21 21 C 1.37895 * 119.06650 * 179.72756 * 20 19 18 22 22 N 1.31994 * 120.84452 * 0.56183 * 21 20 19 23 23 C 1.31996 * 121.90969 * 359.71551 * 22 21 20 24 24 C 1.37894 * 120.84236 * 359.97438 * 23 22 21 25 25 C 1.46847 * 111.20163 * 298.24410 * 18 17 16 26 26 C 1.53041 * 109.51486 * 61.75514 * 25 18 17 27 27 H 0.97001 * 120.00889 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47355 * 60.00024 * 9 7 2 29 29 H 1.09001 * 109.47403 * 299.99859 * 9 7 2 30 30 H 1.08998 * 109.46936 * 59.99924 * 10 9 7 31 31 H 1.08994 * 109.46942 * 299.99543 * 10 9 7 32 32 H 0.97003 * 120.00342 * 244.99883 * 14 11 10 33 33 H 1.08993 * 109.52098 * 335.12277 * 15 14 11 34 34 H 1.09000 * 109.50507 * 62.44159 * 16 15 14 35 35 H 1.08999 * 109.54263 * 302.33092 * 16 15 14 36 36 H 1.09002 * 109.46396 * 179.19729 * 17 16 15 37 37 H 1.08994 * 109.46485 * 299.17654 * 17 16 15 38 38 H 1.08005 * 120.46924 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.58110 * 180.29583 * 21 20 19 40 40 H 1.07998 * 119.58327 * 180.02562 * 23 22 21 41 41 H 1.07994 * 120.46996 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.46836 * 301.74653 * 25 18 17 43 43 H 1.08995 * 109.45748 * 181.76188 * 25 18 17 44 44 H 1.08996 * 109.50341 * 180.87808 * 26 25 18 45 45 H 1.08996 * 109.50165 * 60.75338 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3385 -5.2329 0.0013 12 8 0.6641 -5.4200 -1.2353 13 8 0.6649 -5.4193 1.2386 14 7 2.5207 -6.3926 0.0005 15 6 3.4199 -6.5226 1.1498 16 6 4.8146 -6.9278 0.6648 17 6 5.7337 -7.1198 1.8733 18 7 5.1799 -8.1590 2.7506 19 6 6.0560 -8.4520 3.7915 20 6 7.2819 -7.7960 3.9009 21 6 8.1191 -8.1113 4.9503 22 7 7.7775 -9.0277 5.8368 23 6 6.6291 -9.6744 5.7646 24 6 5.7333 -9.4132 4.7493 25 6 3.8610 -7.7709 3.2667 26 6 2.8860 -7.5983 2.0998 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8905 31 1 2.8720 -3.6043 -0.8895 32 1 2.6178 -6.9857 -0.7608 33 1 3.4796 -5.5696 1.6752 34 1 5.2178 -6.1455 0.0217 35 1 4.7493 -7.8611 0.1055 36 1 6.7239 -7.4222 1.5322 37 1 5.8101 -6.1824 2.4241 38 1 7.5698 -7.0487 3.1762 39 1 9.0683 -7.6050 5.0458 40 1 6.3875 -10.4169 6.5107 41 1 4.7955 -9.9461 4.6958 42 1 3.9462 -6.8302 3.8108 43 1 3.4910 -8.5462 3.9374 44 1 1.9112 -7.2950 2.4818 45 1 2.7898 -8.5422 1.5633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195995665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:57 Heat of formation + Delta-G solvation = -65.848030 kcal Electronic energy + Delta-G solvation = -27134.806564 eV Core-core repulsion = 23277.794265 eV Total energy + Delta-G solvation = -3857.012299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69665 -39.78260 -38.13253 -37.03410 -36.78240 -35.89562 -33.12982 -33.08622 -32.69742 -31.52802 -30.22853 -27.59929 -25.50455 -25.17655 -23.62316 -23.17703 -22.90321 -21.15114 -20.24605 -19.08579 -18.82869 -18.22615 -17.54101 -17.24346 -16.99432 -16.56344 -16.51254 -16.25859 -15.87372 -15.58181 -15.30274 -15.06448 -14.70280 -14.62691 -14.51438 -14.43265 -14.39275 -13.73212 -13.34439 -13.26179 -13.15992 -13.05829 -12.96041 -12.79036 -12.61964 -12.54821 -12.25397 -12.23166 -12.12951 -12.01861 -11.73885 -11.51950 -11.24139 -11.08943 -10.66072 -10.41031 -10.33589 -10.07567 -9.19350 -8.26554 -6.40344 -0.66693 0.26494 0.34115 1.40952 1.41116 1.54306 1.84529 2.37430 2.55470 2.82125 2.96478 3.07312 3.28342 3.61087 3.66530 3.69304 3.85101 3.95756 4.00277 4.08261 4.11310 4.14626 4.27045 4.29594 4.35573 4.37406 4.56303 4.63171 4.74986 4.76731 4.80109 4.83303 4.89886 4.96078 5.09298 5.14724 5.25101 5.27450 5.28608 5.37371 5.67084 5.68436 5.89727 6.05907 6.12210 6.17106 6.74051 7.13863 7.30103 8.85895 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.002613 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.698260 B =10711.908995 C =12059.583647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.972 3.028 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.019 3.981 10 C -0.589 4.589 11 S 2.619 3.381 12 O -1.001 7.001 13 O -0.993 6.993 14 N -1.100 6.100 15 C 0.141 3.859 16 C -0.117 4.117 17 C 0.047 3.953 18 N -0.488 5.488 19 C 0.147 3.853 20 C -0.230 4.230 21 C 0.111 3.889 22 N -0.538 5.538 23 C 0.109 3.891 24 C -0.203 4.203 25 C 0.063 3.937 26 C -0.136 4.136 27 H 0.267 0.733 28 H 0.005 0.995 29 H 0.007 0.993 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.426 0.574 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.156 0.844 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.148 0.852 42 H 0.048 0.952 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.596 -18.992 6.252 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.095 0.905 9 C -0.019 4.019 10 C -0.721 4.721 11 S 2.715 3.285 12 O -0.992 6.992 13 O -0.983 6.983 14 N -0.860 5.860 15 C 0.034 3.966 16 C -0.156 4.156 17 C -0.080 4.080 18 N -0.203 5.203 19 C 0.039 3.961 20 C -0.252 4.252 21 C -0.045 4.045 22 N -0.249 5.249 23 C -0.046 4.046 24 C -0.225 4.225 25 C -0.063 4.063 26 C -0.176 4.176 27 H 0.076 0.924 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.263 0.737 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.173 0.827 39 H 0.190 0.810 40 H 0.191 0.809 41 H 0.166 0.834 42 H 0.066 0.934 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.904 -19.554 6.725 26.087 hybrid contribution -0.188 1.789 -0.682 1.923 sum 15.716 -17.766 6.043 24.477 Atomic orbital electron populations 1.70102 1.08092 1.28237 1.51046 1.26115 0.95830 1.03896 0.94486 0.85284 0.79275 0.78101 0.77714 1.17743 1.20506 1.20502 1.21550 0.94009 0.90739 1.51205 0.90486 1.18820 0.93646 0.93159 0.96314 1.30348 1.12792 1.16579 1.12352 1.04500 0.74736 0.76471 0.72753 1.93505 1.73126 1.85805 1.46720 1.93507 1.72645 1.85335 1.46798 1.55356 1.51941 1.50436 1.28261 1.21066 0.90241 0.99588 0.85704 1.21936 0.91987 1.04064 0.97634 1.22432 0.99388 0.92766 0.93456 1.58785 1.03274 1.41896 1.16299 1.19463 0.93156 0.93849 0.89584 1.22505 0.96672 1.03564 1.02506 1.22982 0.99569 0.92695 0.89279 1.67747 1.19195 1.09308 1.28657 1.22973 0.88455 0.96756 0.96453 1.22002 1.03319 1.00428 0.96765 1.22233 0.86371 1.00893 0.96754 1.22158 0.98687 1.00392 0.96317 0.92436 0.97679 0.97515 0.84061 0.83772 0.73699 0.89695 0.88251 0.89338 0.87791 0.92354 0.82662 0.81010 0.80880 0.83416 0.93383 0.88539 0.90851 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.27 13.28 21.45 0.28 -55.98 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 4 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -28.90 9.11 25.60 0.23 -28.66 16 8 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.02 0.99 4.98 29.85 0.15 1.14 16 10 C -0.59 -20.65 5.90 71.98 0.42 -20.23 16 11 S 2.62 86.36 5.38 -56.49 -0.30 86.05 16 12 O -1.00 -40.06 18.08 -127.65 -2.31 -42.37 16 13 O -0.99 -38.71 17.20 -127.65 -2.20 -40.90 16 14 N -1.10 -23.10 5.37 -169.05 -0.91 -24.01 16 15 C 0.14 2.50 2.62 45.07 0.12 2.61 16 16 C -0.12 -1.40 5.63 30.65 0.17 -1.22 16 17 C 0.05 0.54 4.17 86.33 0.36 0.90 16 18 N -0.49 -7.05 4.70 -694.75 -3.26 -10.31 16 19 C 0.15 2.29 5.65 38.58 0.22 2.50 16 20 C -0.23 -3.25 8.88 22.49 0.20 -3.05 16 21 C 0.11 1.73 11.17 84.59 0.94 2.67 16 22 N -0.54 -10.20 10.36 -196.16 -2.03 -12.23 16 23 C 0.11 1.71 11.17 84.59 0.94 2.66 16 24 C -0.20 -3.02 9.25 22.49 0.21 -2.81 16 25 C 0.06 0.98 5.26 86.33 0.45 1.43 16 26 C -0.14 -2.46 5.70 30.65 0.17 -2.28 16 27 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.14 4.20 7.45 -2.39 -0.02 4.18 16 31 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 32 H 0.43 7.06 8.80 -96.74 -0.85 6.21 16 33 H 0.09 1.52 7.16 -2.39 -0.02 1.51 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 0.94 7.01 -2.39 -0.02 0.92 16 37 H 0.06 0.66 7.78 -2.39 -0.02 0.64 16 38 H 0.16 1.54 5.96 -2.91 -0.02 1.52 16 39 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.15 1.73 7.24 -2.91 -0.02 1.71 16 42 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.10 1.31 6.78 -2.39 -0.02 1.30 16 44 H 0.07 1.65 7.52 -2.39 -0.02 1.63 16 45 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -77.87 375.03 -3.49 -81.35 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.15 Total: 18.09 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 5.06 Total: -44.15 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -5.92 Total: -102.54 kcal Atomic # 8 Polarization: -78.77 SS G_CDS: -4.50 Total: -83.27 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 86.36 SS G_CDS: -0.30 Total: 86.05 kcal Total: -77.87 -3.49 -81.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195995665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.506 kcal (2) G-P(sol) polarization free energy of solvation -77.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds