Wall clock time and date at job start Tue Mar 31 2020 22:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47364 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47303 * 305.00253 * 11 10 9 13 13 C 1.54803 * 109.47334 * 184.99867 * 11 10 9 14 14 N 1.45125 * 109.54096 * 172.12157 * 13 11 10 15 15 C 1.34772 * 118.75765 * 269.26312 * 14 13 11 16 16 O 1.21287 * 120.00242 * 0.02562 * 15 14 13 17 17 C 1.50707 * 120.00117 * 179.97438 * 15 14 13 18 18 C 1.52994 * 109.47135 * 180.02562 * 17 15 14 19 19 C 1.50705 * 109.46759 * 179.97438 * 18 17 15 20 20 N 1.29020 * 124.91460 * 89.70088 * 19 18 17 21 21 C 1.31787 * 117.12715 * 179.81242 * 20 19 18 22 22 C 1.33645 * 114.49639 * 0.46656 * 21 20 19 23 23 S 1.70972 * 124.91674 * 270.00016 * 19 18 17 24 24 C 1.47506 * 122.48288 * 89.28528 * 14 13 11 25 25 C 1.53569 * 111.03314 * 318.36854 * 24 14 13 26 26 C 1.51538 * 109.58033 * 320.02469 * 25 24 14 27 27 O 1.38024 * 109.46993 * 64.99505 * 11 10 9 28 28 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46865 * 300.00257 * 10 9 7 31 31 H 1.09001 * 109.47115 * 59.99779 * 10 9 7 32 32 H 1.08994 * 109.46475 * 292.14748 * 13 11 10 33 33 H 1.09005 * 109.45852 * 52.11824 * 13 11 10 34 34 H 1.09004 * 109.46594 * 300.00479 * 17 15 14 35 35 H 1.08996 * 109.46916 * 60.00064 * 17 15 14 36 36 H 1.08990 * 109.47487 * 299.99866 * 18 17 15 37 37 H 1.09003 * 109.47078 * 60.00562 * 18 17 15 38 38 H 1.07996 * 122.75606 * 180.22437 * 21 20 19 39 39 H 1.07999 * 126.03788 * 179.71929 * 22 21 20 40 40 H 1.09003 * 109.16757 * 78.77061 * 24 14 13 41 41 H 1.09004 * 109.16893 * 197.96938 * 24 14 13 42 42 H 1.09006 * 109.44894 * 80.05297 * 25 24 14 43 43 H 1.08996 * 109.45676 * 199.98601 * 25 24 14 44 44 H 1.08995 * 109.59151 * 211.18086 * 26 25 24 45 45 H 1.09000 * 109.58800 * 331.61937 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0638 -4.8197 -0.0097 12 1 0.3831 -4.7145 0.8352 13 6 1.8340 -6.1570 0.1116 14 7 0.8918 -7.2444 0.3006 15 6 0.5498 -7.5952 1.5562 16 8 1.0272 -7.0049 2.5021 17 6 -0.4267 -8.7201 1.7848 18 6 -0.6406 -8.9122 3.2875 19 6 -1.6176 -10.0366 3.5161 20 7 -1.2958 -11.2790 3.6483 21 6 -2.2770 -12.1361 3.8467 22 6 -3.4952 -11.5872 3.8740 23 16 -3.3135 -9.8516 3.6303 24 6 0.2946 -7.9807 -0.8295 25 6 -0.1015 -7.0234 -1.9631 26 6 -0.6979 -5.7601 -1.3760 27 8 0.3418 -4.8095 -1.1860 28 1 -0.4851 -0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0015 30 1 2.6812 -3.7125 -0.9040 31 1 2.6880 -3.7165 0.8760 32 1 2.4090 -6.3287 -0.7983 33 1 2.5104 -6.1103 0.9652 34 1 -1.3778 -8.4775 1.3107 35 1 -0.0297 -9.6390 1.3536 36 1 0.3102 -9.1545 3.7619 37 1 -1.0379 -7.9931 3.7184 38 1 -2.1108 -13.1957 3.9728 39 1 -4.4266 -12.1143 4.0191 40 1 1.0175 -8.7035 -1.2077 41 1 -0.5923 -8.5109 -0.4826 42 1 0.7819 -6.7695 -2.5491 43 1 -0.8367 -7.5070 -2.6064 44 1 -1.4428 -5.3551 -2.0609 45 1 -1.1648 -5.9876 -0.4177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202098548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:32 Heat of formation + Delta-G solvation = -15.149520 kcal Electronic energy + Delta-G solvation = -27190.203879 eV Core-core repulsion = 23335.390032 eV Total energy + Delta-G solvation = -3854.813847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75768 -40.00394 -38.63553 -35.77051 -34.82382 -34.33511 -32.99138 -30.89439 -30.32752 -28.78379 -26.98787 -26.30920 -24.78450 -23.51331 -22.48955 -21.79073 -21.07732 -20.29585 -19.10094 -18.48436 -17.47488 -17.23537 -16.62469 -16.44635 -16.23938 -15.85069 -15.40306 -15.15707 -14.61338 -14.53711 -14.09578 -13.92334 -13.70844 -13.59306 -13.36542 -13.13715 -12.98559 -12.66151 -12.50536 -12.43250 -12.06563 -11.89223 -11.62483 -11.53203 -11.41491 -11.05855 -10.65782 -10.50738 -10.32800 -10.05019 -9.96041 -9.90704 -9.79573 -9.49104 -9.28520 -9.13547 -8.80835 -8.62176 -6.90021 -6.01343 -2.99473 0.28732 0.95990 1.36076 2.40538 2.43802 2.77306 3.57286 3.61749 3.69312 3.78819 3.87607 4.22084 4.48823 4.53508 4.62704 4.65506 4.74793 4.78148 4.79816 4.87755 5.06230 5.08737 5.15928 5.27404 5.28552 5.37883 5.43029 5.44703 5.53911 5.64456 5.70063 5.76253 5.78451 5.89211 5.91795 6.02728 6.15828 6.41913 6.60994 6.72845 7.11415 7.33613 7.87704 7.92438 7.99195 8.85741 9.33317 10.19842 10.35678 11.47685 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.002284 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.317343 B =12258.261446 C =12820.704689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.329 4.329 8 H 0.064 0.936 9 N -0.737 5.737 10 C 0.172 3.828 11 C 0.088 3.912 12 H 0.051 0.949 13 C 0.081 3.919 14 N -0.609 5.609 15 C 0.508 3.492 16 O -0.529 6.529 17 C -0.133 4.133 18 C -0.031 4.031 19 C 0.053 3.947 20 N -0.474 5.474 21 C 0.038 3.962 22 C -0.264 4.264 23 S 0.127 5.873 24 C 0.104 3.896 25 C -0.167 4.167 26 C 0.073 3.927 27 O -0.370 6.370 28 H 0.255 0.745 29 H 0.369 0.631 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.176 0.824 39 H 0.177 0.823 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 -28.045 1.926 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.245 4.245 3 Si 0.912 3.088 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.383 5.383 10 C 0.044 3.956 11 C 0.028 3.972 12 H 0.069 0.931 13 C -0.042 4.042 14 N -0.343 5.343 15 C 0.296 3.704 16 O -0.405 6.405 17 C -0.174 4.174 18 C -0.072 4.072 19 C -0.224 4.224 20 N -0.189 5.189 21 C -0.113 4.113 22 C -0.403 4.403 23 S 0.380 5.620 24 C -0.018 4.018 25 C -0.205 4.205 26 C -0.004 4.004 27 O -0.288 6.288 28 H 0.066 0.934 29 H 0.203 0.797 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.193 0.807 39 H 0.195 0.805 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.838 -25.249 2.203 26.251 hybrid contribution -0.154 -3.186 0.195 3.195 sum -6.992 -28.435 2.398 29.380 Atomic orbital electron populations 1.70856 1.06026 1.28434 1.53777 1.25778 0.97104 1.00945 1.00637 0.83227 0.74163 0.75567 0.75810 1.21084 1.22305 1.22309 1.20031 0.91986 0.85803 1.48143 0.91784 1.42221 1.04995 1.00512 1.90561 1.20542 0.92306 0.84140 0.98660 1.22291 0.93652 0.94197 0.87077 0.93133 1.22413 0.92136 0.86160 1.03506 1.47935 1.45314 1.35153 1.05862 1.20580 0.82479 0.84496 0.82843 1.90758 1.54246 1.54522 1.40990 1.21689 0.99950 0.98676 0.97135 1.20023 0.97964 0.93395 0.95821 1.27135 0.96736 0.95788 1.02781 1.66304 1.35986 1.00896 1.15673 1.21844 0.86801 1.00950 1.01666 1.27135 1.03564 0.96729 1.12878 1.84233 1.05712 1.06231 1.65780 1.22020 0.98370 0.94197 0.87218 1.22511 1.03008 0.97063 0.97961 1.22121 0.89892 0.88547 0.99809 1.86434 1.47900 1.55604 1.38904 0.93380 0.79727 0.95418 0.94667 0.89832 0.88722 0.88643 0.88170 0.87703 0.88495 0.80718 0.80541 0.91283 0.89940 0.89866 0.89602 0.89254 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.41 13.70 55.49 0.76 -29.65 16 2 C -0.05 -1.44 5.50 -17.43 -0.10 -1.53 16 3 Si 1.08 26.83 29.92 -169.99 -5.09 21.74 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.33 -9.76 9.99 -15.06 -0.15 -9.91 16 8 H 0.06 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.74 -19.94 5.54 -59.91 -0.33 -20.27 16 10 C 0.17 3.73 5.92 -4.05 -0.02 3.71 16 11 C 0.09 1.57 2.68 -25.79 -0.07 1.50 16 12 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 13 C 0.08 1.15 4.86 -3.83 -0.02 1.14 16 14 N -0.61 -7.12 2.19 -172.47 -0.38 -7.49 16 15 C 0.51 6.32 7.63 -10.98 -0.08 6.23 16 16 O -0.53 -8.71 15.41 5.55 0.09 -8.62 16 17 C -0.13 -1.15 4.02 -27.88 -0.11 -1.26 16 18 C -0.03 -0.29 5.09 -27.88 -0.14 -0.43 16 19 C 0.05 0.49 6.64 -13.46 -0.09 0.40 16 20 N -0.47 -4.78 10.54 -11.86 -0.13 -4.90 16 21 C 0.04 0.30 11.35 -19.18 -0.22 0.08 16 22 C -0.26 -1.73 11.37 29.12 0.33 -1.40 16 23 S 0.13 0.95 23.18 -107.50 -2.49 -1.54 16 24 C 0.10 0.85 6.00 -3.20 -0.02 0.83 16 25 C -0.17 -1.50 5.79 -27.18 -0.16 -1.66 16 26 C 0.07 0.92 6.38 36.42 0.23 1.15 16 27 O -0.37 -6.47 9.38 -26.57 -0.25 -6.72 16 28 H 0.25 8.14 6.77 -40.82 -0.28 7.87 16 29 H 0.37 10.34 6.49 -40.82 -0.26 10.07 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.08 8.11 -51.93 -0.42 0.65 16 33 H 0.09 1.44 7.27 -51.93 -0.38 1.06 16 34 H 0.10 0.66 7.41 -51.93 -0.38 0.28 16 35 H 0.10 0.74 8.04 -51.93 -0.42 0.32 16 36 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.50 5.88 -51.93 -0.31 0.19 16 42 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.57 7.40 -51.93 -0.38 0.19 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -37.06 378.76 -9.40 -46.46 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.68 Total: 6.45 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.62 Total: -1.16 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.07 Total: -62.31 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.16 Total: -15.34 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -5.09 Total: 21.74 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.06 -9.40 -46.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202098548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.309 kcal (2) G-P(sol) polarization free energy of solvation -37.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds