Wall clock time and date at job start Tue Mar 31 2020 22:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 13 13 C 1.54807 * 109.46784 * 179.97438 * 11 10 9 14 14 N 1.45122 * 109.54173 * 187.89316 * 13 11 10 15 15 C 1.34774 * 118.75938 * 90.70281 * 14 13 11 16 16 O 1.21286 * 119.99851 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00304 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47621 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47189 * 180.02562 * 18 17 15 20 20 N 1.29022 * 124.91969 * 89.99849 * 19 18 17 21 21 C 1.31785 * 117.12637 * 179.97438 * 20 19 18 22 22 C 1.33639 * 114.49791 * 359.97438 * 21 20 19 23 23 S 1.70979 * 124.91030 * 269.69093 * 19 18 17 24 24 C 1.47504 * 122.48396 * 270.71088 * 14 13 11 25 25 C 1.53579 * 111.02697 * 41.62124 * 24 14 13 26 26 C 1.51534 * 109.57775 * 39.98344 * 25 24 14 27 27 O 1.38014 * 109.47405 * 300.00216 * 11 10 9 28 28 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 29 29 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 31 31 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 32 32 H 1.09002 * 109.45999 * 307.91472 * 13 11 10 33 33 H 1.08997 * 109.46147 * 67.86683 * 13 11 10 34 34 H 1.09004 * 109.47348 * 300.00525 * 17 15 14 35 35 H 1.09001 * 109.47350 * 60.00134 * 17 15 14 36 36 H 1.09003 * 109.46780 * 299.99763 * 18 17 15 37 37 H 1.08995 * 109.47382 * 59.99738 * 18 17 15 38 38 H 1.07995 * 122.75015 * 180.02562 * 21 20 19 39 39 H 1.08004 * 126.03561 * 179.97438 * 22 21 20 40 40 H 1.09005 * 109.16458 * 281.22310 * 24 14 13 41 41 H 1.08997 * 109.12659 * 161.99616 * 24 14 13 42 42 H 1.08998 * 109.45190 * 279.94459 * 25 24 14 43 43 H 1.09003 * 109.43084 * 160.00346 * 25 24 14 44 44 H 1.09001 * 109.58701 * 148.81722 * 26 25 24 45 45 H 1.08997 * 109.59357 * 28.37923 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0636 -4.8197 -0.0109 12 1 0.4339 -4.7598 -0.8986 13 6 1.8376 -6.1603 -0.0175 14 7 0.9064 -7.2575 -0.2048 15 6 0.6373 -7.6729 -1.4584 16 8 1.1703 -7.1319 -2.4040 17 6 -0.3258 -8.8095 -1.6852 18 6 -0.4516 -9.0798 -3.1858 19 6 -1.4152 -10.2160 -3.4126 20 7 -2.6875 -10.0830 -3.5809 21 6 -3.3872 -11.1839 -3.7682 22 6 -2.6648 -12.3082 -3.7578 23 16 -0.9796 -11.8675 -3.4914 24 6 0.2431 -7.9352 0.9251 25 6 -0.2169 -6.9211 1.9827 26 6 -0.7760 -5.6908 1.2972 27 8 0.2740 -4.7493 1.1189 28 1 -0.4850 0.8400 0.0040 29 1 0.3555 -2.3880 -0.0021 30 1 2.6812 -3.7126 -0.9040 31 1 2.6880 -3.7165 0.8760 32 1 2.5630 -6.1569 -0.8311 33 1 2.3581 -6.2838 0.9321 34 1 0.0440 -9.7045 -1.1849 35 1 -1.3025 -8.5444 -1.2803 36 1 -0.8213 -8.1849 -3.6864 37 1 0.5251 -9.3451 -3.5904 38 1 -4.4566 -11.1780 -3.9186 39 1 -3.0461 -13.3097 -3.8919 40 1 0.9416 -8.6366 1.3816 41 1 -0.6230 -8.4832 0.5542 42 1 0.6311 -6.6360 2.6053 43 1 -0.9893 -7.3721 2.6058 44 1 -1.5590 -5.2519 1.9156 45 1 -1.1866 -5.9681 0.3263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202098549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:36 Heat of formation + Delta-G solvation = -14.701966 kcal Electronic energy + Delta-G solvation = -27138.016287 eV Core-core repulsion = 23283.221847 eV Total energy + Delta-G solvation = -3854.794440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69436 -39.97992 -38.54725 -35.67586 -34.60684 -34.26723 -32.80878 -30.88627 -30.31983 -28.83977 -27.02984 -26.25329 -24.92672 -23.55965 -22.37874 -21.69600 -20.89556 -20.28446 -19.03305 -18.45994 -17.42652 -17.09578 -16.53853 -16.35831 -16.09013 -15.88953 -15.22758 -15.05878 -14.52450 -14.46630 -14.24332 -13.95469 -13.71883 -13.33483 -13.14059 -13.02758 -12.89842 -12.55639 -12.49829 -12.26076 -11.96575 -11.90030 -11.61602 -11.49888 -11.32342 -10.95555 -10.78643 -10.73352 -10.24371 -10.04429 -9.99515 -9.86428 -9.78049 -9.62884 -9.37701 -9.26848 -8.78937 -8.56263 -6.80237 -5.65366 -2.93371 0.30108 0.96531 1.35862 2.44096 2.47769 2.83092 3.50767 3.55118 3.57256 3.72290 3.98851 4.26265 4.54293 4.58802 4.65390 4.68248 4.74502 4.79752 4.81735 4.94341 5.08195 5.12189 5.24956 5.35174 5.36425 5.44349 5.48773 5.51570 5.62634 5.67573 5.69013 5.79997 5.86414 5.98825 6.01710 6.12622 6.38076 6.48820 6.70058 6.82587 7.16996 7.36921 7.78306 8.02737 8.05381 8.53039 9.64445 10.23299 10.59392 11.57613 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.002200 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.373457 B =12725.344382 C =13162.078674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.089 3.911 12 H 0.051 0.949 13 C 0.081 3.919 14 N -0.609 5.609 15 C 0.509 3.491 16 O -0.530 6.530 17 C -0.133 4.133 18 C -0.031 4.031 19 C 0.056 3.944 20 N -0.472 5.472 21 C 0.041 3.959 22 C -0.264 4.264 23 S 0.118 5.882 24 C 0.104 3.896 25 C -0.167 4.167 26 C 0.073 3.927 27 O -0.367 6.367 28 H 0.254 0.746 29 H 0.387 0.613 30 H 0.034 0.966 31 H 0.026 0.974 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.176 0.824 39 H 0.177 0.823 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 -30.694 -1.570 31.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.038 3.962 11 C 0.029 3.971 12 H 0.069 0.931 13 C -0.043 4.043 14 N -0.342 5.342 15 C 0.296 3.704 16 O -0.406 6.406 17 C -0.175 4.175 18 C -0.072 4.072 19 C -0.222 4.222 20 N -0.186 5.186 21 C -0.110 4.110 22 C -0.403 4.403 23 S 0.372 5.628 24 C -0.018 4.018 25 C -0.205 4.205 26 C -0.004 4.004 27 O -0.285 6.285 28 H 0.064 0.936 29 H 0.221 0.779 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.193 0.807 39 H 0.194 0.806 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.203 -30.180 -1.843 30.405 hybrid contribution -1.061 0.438 -0.209 1.167 sum -4.264 -29.742 -2.052 30.116 Atomic orbital electron populations 1.69682 1.05094 1.25444 1.57905 1.24741 0.95524 0.97627 1.03265 0.86178 0.78597 0.83914 0.77444 1.21801 1.21851 1.20804 1.19235 0.90989 0.84157 1.42368 0.91197 1.42213 1.06067 0.99464 1.89214 1.20615 0.92380 0.84741 0.98472 1.22270 0.92613 0.94002 0.88245 0.93071 1.22438 0.92461 0.86031 1.03362 1.47940 1.45180 1.35058 1.06036 1.20559 0.82559 0.84415 0.82848 1.90753 1.51591 1.57390 1.40860 1.21686 1.00551 0.98161 0.97069 1.20030 0.96465 0.94777 0.95963 1.27155 0.94294 0.98126 1.02607 1.66311 1.04965 1.32002 1.15354 1.21870 1.01743 0.85953 1.01476 1.27112 0.95616 1.04532 1.13002 1.84100 1.08768 1.03817 1.66137 1.22026 0.97292 0.94902 0.87586 1.22515 1.02750 0.96910 0.98365 1.22112 0.89936 0.88938 0.99375 1.86445 1.44738 1.54323 1.42985 0.93637 0.77862 0.94802 0.95626 0.88785 0.89872 0.88716 0.88111 0.87578 0.88589 0.80662 0.80562 0.91354 0.89973 0.89876 0.89694 0.89257 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.43 13.06 55.49 0.72 -28.71 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 23.20 29.55 -169.99 -5.02 18.18 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.69 5.49 -59.90 -0.33 -20.02 16 10 C 0.17 3.59 5.95 -4.04 -0.02 3.56 16 11 C 0.09 1.60 2.73 -25.78 -0.07 1.53 16 12 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 13 C 0.08 1.14 4.86 -3.83 -0.02 1.12 16 14 N -0.61 -7.12 2.19 -172.47 -0.38 -7.49 16 15 C 0.51 6.30 7.63 -10.99 -0.08 6.22 16 16 O -0.53 -8.65 15.41 5.55 0.09 -8.57 16 17 C -0.13 -1.15 4.02 -27.89 -0.11 -1.26 16 18 C -0.03 -0.29 5.09 -27.88 -0.14 -0.43 16 19 C 0.06 0.52 6.64 -13.46 -0.09 0.43 16 20 N -0.47 -4.96 10.54 -11.86 -0.13 -5.08 16 21 C 0.04 0.32 11.35 -19.18 -0.22 0.11 16 22 C -0.26 -1.69 11.37 29.12 0.33 -1.36 16 23 S 0.12 0.82 23.18 -107.50 -2.49 -1.67 16 24 C 0.10 0.86 6.00 -3.19 -0.02 0.84 16 25 C -0.17 -1.56 5.79 -27.17 -0.16 -1.72 16 26 C 0.07 0.97 6.37 36.42 0.23 1.20 16 27 O -0.37 -6.60 9.19 -26.53 -0.24 -6.84 16 28 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.39 11.21 7.53 -40.82 -0.31 10.91 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.41 7.27 -51.93 -0.38 1.03 16 33 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 34 H 0.09 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.10 0.82 7.41 -51.93 -0.38 0.44 16 36 H 0.11 1.19 8.10 -51.93 -0.42 0.76 16 37 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.18 0.65 8.06 -52.48 -0.42 0.22 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.51 5.87 -51.93 -0.30 0.21 16 42 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.62 7.40 -51.93 -0.38 0.23 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -36.20 380.18 -9.45 -45.65 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.78 Total: 6.26 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.62 Total: 2.56 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.11 Total: -61.30 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.16 Total: -15.41 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.20 -9.45 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202098549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.946 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds