Wall clock time and date at job start Tue Mar 31 2020 22:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 13 13 C 1.54807 * 109.46784 * 179.97438 * 11 10 9 14 14 N 1.45122 * 109.54173 * 187.89316 * 13 11 10 15 15 C 1.34774 * 118.75938 * 90.70281 * 14 13 11 16 16 O 1.21286 * 119.99851 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00304 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47621 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47189 * 180.02562 * 18 17 15 20 20 N 1.29022 * 124.91969 * 89.99849 * 19 18 17 21 21 C 1.31785 * 117.12637 * 179.97438 * 20 19 18 22 22 C 1.33639 * 114.49791 * 359.97438 * 21 20 19 23 23 S 1.70979 * 124.91030 * 269.69093 * 19 18 17 24 24 C 1.47504 * 122.48396 * 270.71088 * 14 13 11 25 25 C 1.53579 * 111.02697 * 41.62124 * 24 14 13 26 26 C 1.51534 * 109.57775 * 39.98344 * 25 24 14 27 27 O 1.38014 * 109.47405 * 300.00216 * 11 10 9 28 28 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 29 29 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 31 31 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 32 32 H 1.09002 * 109.45999 * 307.91472 * 13 11 10 33 33 H 1.08997 * 109.46147 * 67.86683 * 13 11 10 34 34 H 1.09004 * 109.47348 * 300.00525 * 17 15 14 35 35 H 1.09001 * 109.47350 * 60.00134 * 17 15 14 36 36 H 1.09003 * 109.46780 * 299.99763 * 18 17 15 37 37 H 1.08995 * 109.47382 * 59.99738 * 18 17 15 38 38 H 1.07995 * 122.75015 * 180.02562 * 21 20 19 39 39 H 1.08004 * 126.03561 * 179.97438 * 22 21 20 40 40 H 1.09005 * 109.16458 * 281.22310 * 24 14 13 41 41 H 1.08997 * 109.12659 * 161.99616 * 24 14 13 42 42 H 1.08998 * 109.45190 * 279.94459 * 25 24 14 43 43 H 1.09003 * 109.43084 * 160.00346 * 25 24 14 44 44 H 1.09001 * 109.58701 * 148.81722 * 26 25 24 45 45 H 1.08997 * 109.59357 * 28.37923 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0636 -4.8197 -0.0109 12 1 0.4339 -4.7598 -0.8986 13 6 1.8376 -6.1603 -0.0175 14 7 0.9064 -7.2575 -0.2048 15 6 0.6373 -7.6729 -1.4584 16 8 1.1703 -7.1319 -2.4040 17 6 -0.3258 -8.8095 -1.6852 18 6 -0.4516 -9.0798 -3.1858 19 6 -1.4152 -10.2160 -3.4126 20 7 -2.6875 -10.0830 -3.5809 21 6 -3.3872 -11.1839 -3.7682 22 6 -2.6648 -12.3082 -3.7578 23 16 -0.9796 -11.8675 -3.4914 24 6 0.2431 -7.9352 0.9251 25 6 -0.2169 -6.9211 1.9827 26 6 -0.7760 -5.6908 1.2972 27 8 0.2740 -4.7493 1.1189 28 1 -0.4850 0.8400 0.0040 29 1 0.3555 -2.3880 -0.0021 30 1 2.6812 -3.7126 -0.9040 31 1 2.6880 -3.7165 0.8760 32 1 2.5630 -6.1569 -0.8311 33 1 2.3581 -6.2838 0.9321 34 1 0.0440 -9.7045 -1.1849 35 1 -1.3025 -8.5444 -1.2803 36 1 -0.8213 -8.1849 -3.6864 37 1 0.5251 -9.3451 -3.5904 38 1 -4.4566 -11.1780 -3.9186 39 1 -3.0461 -13.3097 -3.8919 40 1 0.9416 -8.6366 1.3816 41 1 -0.6230 -8.4832 0.5542 42 1 0.6311 -6.6360 2.6053 43 1 -0.9893 -7.3721 2.6058 44 1 -1.5590 -5.2519 1.9156 45 1 -1.1866 -5.9681 0.3263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202098549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:35 Heat of formation + Delta-G solvation = -40.052241 kcal Electronic energy + Delta-G solvation = -27139.115557 eV Core-core repulsion = 23283.221847 eV Total energy + Delta-G solvation = -3855.893710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71601 -40.62340 -39.73322 -36.92096 -36.23939 -35.09104 -34.24940 -32.65842 -31.11012 -30.07596 -28.19455 -27.10031 -26.36841 -24.75531 -23.74525 -22.73722 -22.29254 -20.88082 -19.95809 -19.26231 -19.09747 -18.28417 -17.74203 -17.55732 -17.09170 -16.55283 -16.53044 -16.20401 -15.88715 -15.33416 -15.22915 -15.15177 -14.83635 -14.71749 -14.61101 -14.00378 -13.95280 -13.75985 -13.49110 -13.36965 -13.15805 -13.05215 -12.76962 -12.58964 -12.41717 -12.28786 -12.24171 -12.11312 -11.97862 -11.82315 -11.46880 -10.98438 -10.92857 -10.60354 -10.55148 -10.36605 -9.82721 -9.65122 -9.01599 -7.94304 -5.24213 -0.26613 0.41924 0.80921 1.45974 1.49604 1.52182 1.58028 1.80600 1.97608 2.56144 2.72554 3.07981 3.38895 3.51676 3.64212 3.83543 3.87677 3.97591 4.02903 4.07494 4.13792 4.22267 4.29122 4.38702 4.42477 4.46599 4.48706 4.55565 4.56865 4.70033 4.73078 4.81069 4.87267 4.88491 4.96119 5.09687 5.13166 5.20666 5.23603 5.46755 5.51731 6.25299 6.26644 6.75541 6.80107 7.08922 7.32260 8.06916 8.32101 9.29731 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.002200 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.373457 B =12725.344382 C =13162.078674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.740 5.740 10 C 0.162 3.838 11 C 0.104 3.896 12 H 0.018 0.982 13 C 0.095 3.905 14 N -0.608 5.608 15 C 0.503 3.497 16 O -0.579 6.579 17 C -0.120 4.120 18 C -0.028 4.028 19 C 0.033 3.967 20 N -0.506 5.506 21 C 0.017 3.983 22 C -0.251 4.251 23 S 0.156 5.844 24 C 0.099 3.901 25 C -0.157 4.157 26 C 0.063 3.937 27 O -0.397 6.397 28 H 0.251 0.749 29 H 0.373 0.627 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.192 0.808 39 H 0.207 0.793 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.092 0.908 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.020 -33.715 -0.369 33.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.383 5.383 10 C 0.035 3.965 11 C 0.044 3.956 12 H 0.036 0.964 13 C -0.030 4.030 14 N -0.340 5.340 15 C 0.293 3.707 16 O -0.459 6.459 17 C -0.161 4.161 18 C -0.069 4.069 19 C -0.244 4.244 20 N -0.221 5.221 21 C -0.133 4.133 22 C -0.390 4.390 23 S 0.409 5.591 24 C -0.021 4.021 25 C -0.195 4.195 26 C -0.012 4.012 27 O -0.316 6.316 28 H 0.060 0.940 29 H 0.205 0.795 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.209 0.791 39 H 0.224 0.776 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.094 0.906 43 H 0.138 0.862 44 H 0.110 0.890 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.832 -33.256 -0.613 33.382 hybrid contribution -1.224 1.271 -0.592 1.861 sum -4.056 -31.985 -1.204 32.264 Atomic orbital electron populations 1.69861 1.06823 1.26073 1.59493 1.25680 0.96500 1.01418 1.03634 0.85038 0.77702 0.78943 0.77447 1.21382 1.21991 1.19097 1.19697 0.91604 0.85246 1.41312 0.90339 1.42426 1.05633 1.00950 1.89273 1.20771 0.93155 0.84115 0.98449 1.21896 0.91843 0.94802 0.87090 0.96442 1.22095 0.92173 0.84869 1.03859 1.48053 1.44704 1.34149 1.07116 1.21260 0.82342 0.84773 0.82345 1.90731 1.53538 1.59146 1.42444 1.21663 0.99773 0.97759 0.96923 1.19898 0.96578 0.94071 0.96367 1.26992 0.94050 0.99345 1.04014 1.66293 1.05880 1.33820 1.16141 1.22175 1.02690 0.85900 1.02525 1.27527 0.95220 1.05463 1.10768 1.83934 1.08731 1.01381 1.65073 1.22367 0.98808 0.94686 0.86247 1.22434 1.03303 0.95216 0.98524 1.22402 0.89125 0.90024 0.99699 1.86361 1.45995 1.56781 1.42458 0.94019 0.79516 0.94781 0.94852 0.89974 0.87898 0.85247 0.87259 0.90534 0.88463 0.79131 0.77603 0.88344 0.87365 0.90599 0.86235 0.88982 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.08 13.06 21.65 0.28 -62.80 16 2 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 3 Si 0.98 48.33 29.55 68.60 2.03 50.35 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.74 -41.68 5.49 -343.44 -1.89 -43.57 16 10 C 0.16 7.23 5.95 86.38 0.51 7.75 16 11 C 0.10 3.89 2.73 31.21 0.09 3.97 16 12 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 13 C 0.09 2.65 4.86 87.25 0.42 3.08 16 14 N -0.61 -13.41 2.19 -817.96 -1.79 -15.20 16 15 C 0.50 12.27 7.63 87.66 0.67 12.94 16 16 O -0.58 -19.71 15.41 -3.05 -0.05 -19.76 16 17 C -0.12 -1.89 4.02 29.85 0.12 -1.77 16 18 C -0.03 -0.52 5.09 29.85 0.15 -0.37 16 19 C 0.03 0.57 6.64 88.52 0.59 1.16 16 20 N -0.51 -10.32 10.54 -191.45 -2.02 -12.34 16 21 C 0.02 0.25 11.35 83.66 0.95 1.20 16 22 C -0.25 -2.53 11.37 66.78 0.76 -1.77 16 23 S 0.16 1.79 23.18 -56.49 -1.31 0.48 16 24 C 0.10 1.28 6.00 86.38 0.52 1.80 16 25 C -0.16 -2.49 5.79 30.31 0.18 -2.31 16 26 C 0.06 1.64 6.37 71.50 0.46 2.10 16 27 O -0.40 -14.59 9.19 -117.85 -1.08 -15.67 16 28 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.37 22.71 7.53 -92.71 -0.70 22.01 16 30 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 2.51 7.27 -2.39 -0.02 2.49 16 33 H 0.10 2.48 8.11 -2.39 -0.02 2.46 16 34 H 0.13 1.14 8.04 -2.38 -0.02 1.12 16 35 H 0.11 1.57 7.41 -2.39 -0.02 1.56 16 36 H 0.08 1.86 8.10 -2.39 -0.02 1.84 16 37 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 38 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.11 0.88 5.87 -2.39 -0.01 0.86 16 42 H 0.08 1.37 8.01 -2.39 -0.02 1.35 16 43 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.04 1.09 7.40 -2.39 -0.02 1.07 16 Total: -1.00 -82.58 380.18 1.19 -81.39 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.30 Total: 27.72 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.72 Total: 9.41 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -5.41 Total: -133.91 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -1.13 Total: -35.43 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.35 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.31 Total: 0.48 kcal Total: -82.58 1.19 -81.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202098549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.333 kcal (2) G-P(sol) polarization free energy of solvation -82.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds