Wall clock time and date at job start Tue Mar 31 2020 22:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99732 * 2 1 4 4 H 1.48492 * 109.47254 * 270.00233 * 3 2 1 5 5 H 1.48502 * 109.47009 * 30.00395 * 3 2 1 6 6 H 1.48497 * 109.47215 * 149.99915 * 3 2 1 7 7 C 1.37879 * 120.00614 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99199 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00291 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99620 * 269.99826 * 10 9 7 12 12 C 1.50696 * 109.47187 * 269.99720 * 11 10 9 13 13 C 1.38669 * 120.42076 * 269.72404 * 12 11 10 14 14 C 1.38622 * 118.42221 * 179.78544 * 13 12 11 15 15 C 1.38230 * 119.15872 * 0.51232 * 14 13 12 16 16 N 1.31848 * 120.76219 * 359.72424 * 15 14 13 17 17 C 1.31879 * 121.73066 * 0.02562 * 16 15 14 18 18 C 1.34770 * 119.99998 * 90.00075 * 10 9 7 19 19 O 1.21552 * 119.99656 * 180.02562 * 18 10 9 20 20 N 1.34776 * 120.00304 * 359.97438 * 18 10 9 21 21 C 1.34780 * 119.99886 * 179.97438 * 20 18 10 22 22 O 1.21507 * 120.00166 * 0.02562 * 21 20 18 23 23 C 1.47769 * 119.99526 * 180.02562 * 21 20 18 24 24 C 1.39615 * 120.14226 * 180.02562 * 23 21 20 25 25 C 1.37948 * 119.84619 * 179.97438 * 24 23 21 26 26 C 1.38368 * 120.14900 * 359.97438 * 25 24 23 27 27 C 1.38367 * 120.30190 * 0.04426 * 26 25 24 28 28 C 1.37945 * 120.14535 * 359.95879 * 27 26 25 29 29 H 0.96996 * 119.99925 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47226 * 59.99879 * 9 7 2 31 31 H 1.09006 * 109.47471 * 300.00057 * 9 7 2 32 32 H 1.09001 * 109.47046 * 30.00267 * 11 10 9 33 33 H 1.09006 * 109.46544 * 149.99710 * 11 10 9 34 34 H 1.07999 * 120.78901 * 0.02562 * 13 12 11 35 35 H 1.08004 * 120.42601 * 180.21693 * 14 13 12 36 36 H 1.07999 * 119.61684 * 179.75392 * 15 14 13 37 37 H 1.07998 * 119.62158 * 179.97438 * 17 16 15 38 38 H 0.96997 * 119.99989 * 0.02562 * 20 18 10 39 39 H 1.07998 * 120.08035 * 359.69992 * 24 23 21 40 40 H 1.08000 * 119.92582 * 179.97438 * 25 24 23 41 41 H 1.08008 * 119.85039 * 180.02562 * 26 25 24 42 42 H 1.07996 * 119.92429 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.07609 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0001 -2.5751 0.0001 11 6 4.2448 -3.2653 1.2689 12 6 5.6682 -3.0284 1.7033 13 6 6.6755 -3.8977 1.3127 14 6 7.9709 -3.6377 1.7322 15 6 8.2120 -2.5344 2.5293 16 7 7.2284 -1.7319 2.8855 17 6 5.9852 -1.9455 2.5011 18 6 4.2243 -3.2106 -1.1670 19 8 4.6291 -4.3568 -1.1668 20 7 3.9987 -2.5758 -2.3343 21 6 4.2235 -3.2113 -3.5014 22 8 4.6290 -4.3567 -3.5013 23 6 3.9767 -2.5150 -4.7812 24 6 4.2080 -3.1706 -5.9920 25 6 3.9750 -2.5149 -7.1831 26 6 3.5126 -1.2108 -7.1797 27 6 3.2817 -0.5551 -5.9833 28 6 3.5106 -1.1990 -4.7850 29 1 -0.4850 0.8400 -0.0004 30 1 3.8753 -0.6795 0.8894 31 1 3.8747 -0.6806 -0.8905 32 1 3.5642 -2.8811 2.0287 33 1 4.0778 -4.3346 1.1389 34 1 6.4566 -4.7547 0.6930 35 1 8.7808 -4.2915 1.4440 36 1 9.2178 -2.3271 2.8637 37 1 5.2057 -1.2663 2.8133 38 1 3.6753 -1.6613 -2.3344 39 1 4.5726 -4.1871 -5.9961 40 1 4.1538 -3.0206 -8.1205 41 1 3.3315 -0.7021 -8.1151 42 1 2.9212 0.4629 -5.9877 43 1 3.3296 -0.6863 -3.8518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202447441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:47 Heat of formation + Delta-G solvation = 12.735740 kcal Electronic energy + Delta-G solvation = -28851.419900 eV Core-core repulsion = 24862.371298 eV Total energy + Delta-G solvation = -3989.048603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97673 -40.01160 -39.09519 -37.68664 -35.37027 -34.36017 -32.99122 -32.22083 -31.48934 -31.08641 -30.96711 -28.32215 -26.46712 -24.41954 -23.45036 -22.83959 -22.53251 -22.15018 -20.72329 -19.60551 -18.39443 -17.30396 -17.01265 -16.81613 -16.36943 -16.01433 -15.65562 -15.42269 -15.25247 -14.92299 -14.51538 -14.45690 -14.10902 -13.76303 -13.62157 -13.50077 -13.24610 -13.12062 -12.80994 -12.63842 -12.52908 -12.24175 -11.95026 -11.76053 -11.36001 -11.20583 -11.15647 -10.90712 -10.48522 -10.34069 -9.82946 -9.66398 -9.62317 -9.34607 -9.28608 -9.10529 -9.06104 -8.90441 -8.85857 -8.00233 -6.36372 -4.41126 0.74758 1.19846 1.26696 1.44629 2.63296 2.87141 3.03335 3.14500 3.17230 3.57882 3.89228 4.01758 4.11445 4.24362 4.57834 4.67997 4.73762 4.83284 4.91803 4.96578 5.03363 5.06862 5.17593 5.23872 5.26306 5.37988 5.51449 5.67352 5.78345 5.86982 5.92292 6.07842 6.13919 6.21275 6.25274 6.29406 6.32116 6.36544 6.43932 6.58759 6.75358 6.84046 6.87052 7.17581 7.24279 7.83068 8.09207 8.17665 8.41493 8.70384 8.91568 9.21052 10.75560 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008247 B = 0.004551 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.202669 B = 6150.435839 C = 8419.421898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.081 3.919 3 Si 0.864 3.136 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.208 3.792 10 N -0.596 5.596 11 C 0.177 3.823 12 C -0.150 4.150 13 C -0.052 4.052 14 C -0.180 4.180 15 C 0.091 3.909 16 N -0.491 5.491 17 C 0.112 3.888 18 C 0.704 3.296 19 O -0.554 6.554 20 N -0.679 5.679 21 C 0.564 3.436 22 O -0.476 6.476 23 C -0.134 4.134 24 C -0.058 4.058 25 C -0.131 4.131 26 C -0.095 4.095 27 C -0.126 4.126 28 C -0.080 4.080 29 H 0.269 0.731 30 H 0.042 0.958 31 H 0.018 0.982 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.416 0.584 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.131 0.869 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.203 -0.514 -6.952 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.124 4.124 3 Si 0.690 3.310 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.589 4.589 8 H 0.100 0.900 9 C 0.087 3.913 10 N -0.330 5.330 11 C 0.053 3.947 12 C -0.153 4.153 13 C -0.079 4.079 14 C -0.200 4.200 15 C -0.066 4.066 16 N -0.199 5.199 17 C -0.045 4.045 18 C 0.406 3.594 19 O -0.429 6.429 20 N -0.345 5.345 21 C 0.351 3.649 22 O -0.347 6.347 23 C -0.137 4.137 24 C -0.077 4.077 25 C -0.149 4.149 26 C -0.113 4.113 27 C -0.144 4.144 28 C -0.099 4.099 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.256 0.744 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.149 0.851 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.730 -1.179 -6.395 12.547 hybrid contribution -0.196 1.002 -0.529 1.150 sum 10.535 -0.177 -6.924 12.607 Atomic orbital electron populations 1.69880 1.06214 1.27422 1.48368 1.24876 0.94714 0.98783 0.94057 0.87032 0.80705 0.84125 0.79107 1.19742 1.20552 1.18629 1.21378 0.88671 0.95295 1.53541 0.89973 1.19821 0.96120 0.77875 0.97523 1.47217 1.66796 1.15953 1.03080 1.20099 0.90471 0.98877 0.85253 1.21462 0.98167 0.96652 0.99020 1.21723 0.92097 0.98647 0.95429 1.22133 0.97695 0.99694 1.00472 1.22704 0.98253 0.91027 0.94627 1.67693 1.00582 1.29337 1.22288 1.22786 0.93519 0.94798 0.93425 1.15892 0.78731 0.84360 0.80415 1.90940 1.50304 1.15610 1.86030 1.44098 1.64782 1.19701 1.05943 1.18305 0.77314 0.86070 0.83173 1.90842 1.40490 1.16254 1.87162 1.19912 1.05376 0.95231 0.93172 1.21281 0.95559 1.00133 0.90756 1.21134 1.00738 0.95147 0.97910 1.21394 0.96883 0.94755 0.98259 1.21145 1.00608 1.00580 0.92026 1.21487 0.95695 0.93414 0.99262 0.92122 0.93974 0.96408 0.88356 0.89159 0.84216 0.85154 0.83231 0.82594 0.74437 0.84561 0.85314 0.85584 0.85141 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.05 13.96 55.43 0.77 -23.28 16 2 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.86 18.16 27.47 -169.99 -4.67 13.49 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.26 -5.25 6.54 56.52 0.37 -4.88 16 7 C -0.55 -13.30 9.94 -34.44 -0.34 -13.64 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.21 4.19 3.99 -5.20 -0.02 4.17 16 10 N -0.60 -11.51 2.44 -182.19 -0.44 -11.95 16 11 C 0.18 2.99 5.56 -5.19 -0.03 2.96 16 12 C -0.15 -2.34 5.48 -104.48 -0.57 -2.92 16 13 C -0.05 -0.79 9.86 -39.28 -0.39 -1.17 16 14 C -0.18 -2.32 10.11 -39.44 -0.40 -2.72 16 15 C 0.09 1.19 11.18 -17.55 -0.20 1.00 16 16 N -0.49 -7.55 10.36 -13.25 -0.14 -7.69 16 17 C 0.11 1.73 10.86 -17.55 -0.19 1.54 16 18 C 0.70 14.60 8.22 -86.92 -0.71 13.88 16 19 O -0.55 -12.71 13.97 -18.48 -0.26 -12.97 16 20 N -0.68 -12.75 5.05 -16.66 -0.08 -12.83 16 21 C 0.56 10.45 7.71 -12.36 -0.10 10.36 16 22 O -0.48 -10.33 14.74 -18.45 -0.27 -10.61 16 23 C -0.13 -1.99 5.87 -104.97 -0.62 -2.61 16 24 C -0.06 -0.76 9.60 -39.17 -0.38 -1.13 16 25 C -0.13 -1.34 10.03 -39.64 -0.40 -1.74 16 26 C -0.09 -0.91 10.04 -39.49 -0.40 -1.31 16 27 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16 28 C -0.08 -1.05 9.54 -39.18 -0.37 -1.43 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.04 0.83 7.13 -51.93 -0.37 0.46 16 31 H 0.02 0.35 5.79 -51.93 -0.30 0.04 16 32 H 0.10 1.56 8.02 -51.93 -0.42 1.14 16 33 H 0.09 1.54 7.37 -51.93 -0.38 1.16 16 34 H 0.14 2.18 7.71 -52.49 -0.40 1.77 16 35 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.16 2.25 8.06 -52.49 -0.42 1.82 16 38 H 0.42 7.17 4.46 -40.82 -0.18 6.99 16 39 H 0.14 1.73 7.65 -52.49 -0.40 1.33 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.13 1.68 6.41 -52.48 -0.34 1.34 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -32.31 371.50 -10.02 -42.33 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -4.92 Total: 12.53 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -5.60 Total: 5.38 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.11 Total: -55.75 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.53 Total: -23.58 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -4.67 Total: 13.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.31 -10.02 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202447441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.068 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds