Wall clock time and date at job start Tue Mar 31 2020 22:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99732 * 2 1 4 4 H 1.48492 * 109.47254 * 270.00233 * 3 2 1 5 5 H 1.48502 * 109.47009 * 30.00395 * 3 2 1 6 6 H 1.48497 * 109.47215 * 149.99915 * 3 2 1 7 7 C 1.37879 * 120.00614 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99199 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00291 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99620 * 269.99826 * 10 9 7 12 12 C 1.50696 * 109.47187 * 269.99720 * 11 10 9 13 13 C 1.38669 * 120.42076 * 269.72404 * 12 11 10 14 14 C 1.38622 * 118.42221 * 179.78544 * 13 12 11 15 15 C 1.38230 * 119.15872 * 0.51232 * 14 13 12 16 16 N 1.31848 * 120.76219 * 359.72424 * 15 14 13 17 17 C 1.31879 * 121.73066 * 0.02562 * 16 15 14 18 18 C 1.34770 * 119.99998 * 90.00075 * 10 9 7 19 19 O 1.21552 * 119.99656 * 180.02562 * 18 10 9 20 20 N 1.34776 * 120.00304 * 359.97438 * 18 10 9 21 21 C 1.34780 * 119.99886 * 179.97438 * 20 18 10 22 22 O 1.21507 * 120.00166 * 0.02562 * 21 20 18 23 23 C 1.47769 * 119.99526 * 180.02562 * 21 20 18 24 24 C 1.39615 * 120.14226 * 180.02562 * 23 21 20 25 25 C 1.37948 * 119.84619 * 179.97438 * 24 23 21 26 26 C 1.38368 * 120.14900 * 359.97438 * 25 24 23 27 27 C 1.38367 * 120.30190 * 0.04426 * 26 25 24 28 28 C 1.37945 * 120.14535 * 359.95879 * 27 26 25 29 29 H 0.96996 * 119.99925 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47226 * 59.99879 * 9 7 2 31 31 H 1.09006 * 109.47471 * 300.00057 * 9 7 2 32 32 H 1.09001 * 109.47046 * 30.00267 * 11 10 9 33 33 H 1.09006 * 109.46544 * 149.99710 * 11 10 9 34 34 H 1.07999 * 120.78901 * 0.02562 * 13 12 11 35 35 H 1.08004 * 120.42601 * 180.21693 * 14 13 12 36 36 H 1.07999 * 119.61684 * 179.75392 * 15 14 13 37 37 H 1.07998 * 119.62158 * 179.97438 * 17 16 15 38 38 H 0.96997 * 119.99989 * 0.02562 * 20 18 10 39 39 H 1.07998 * 120.08035 * 359.69992 * 24 23 21 40 40 H 1.08000 * 119.92582 * 179.97438 * 25 24 23 41 41 H 1.08008 * 119.85039 * 180.02562 * 26 25 24 42 42 H 1.07996 * 119.92429 * 179.97438 * 27 26 25 43 43 H 1.08003 * 120.07609 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0001 -2.5751 0.0001 11 6 4.2448 -3.2653 1.2689 12 6 5.6682 -3.0284 1.7033 13 6 6.6755 -3.8977 1.3127 14 6 7.9709 -3.6377 1.7322 15 6 8.2120 -2.5344 2.5293 16 7 7.2284 -1.7319 2.8855 17 6 5.9852 -1.9455 2.5011 18 6 4.2243 -3.2106 -1.1670 19 8 4.6291 -4.3568 -1.1668 20 7 3.9987 -2.5758 -2.3343 21 6 4.2235 -3.2113 -3.5014 22 8 4.6290 -4.3567 -3.5013 23 6 3.9767 -2.5150 -4.7812 24 6 4.2080 -3.1706 -5.9920 25 6 3.9750 -2.5149 -7.1831 26 6 3.5126 -1.2108 -7.1797 27 6 3.2817 -0.5551 -5.9833 28 6 3.5106 -1.1990 -4.7850 29 1 -0.4850 0.8400 -0.0004 30 1 3.8753 -0.6795 0.8894 31 1 3.8747 -0.6806 -0.8905 32 1 3.5642 -2.8811 2.0287 33 1 4.0778 -4.3346 1.1389 34 1 6.4566 -4.7547 0.6930 35 1 8.7808 -4.2915 1.4440 36 1 9.2178 -2.3271 2.8637 37 1 5.2057 -1.2663 2.8133 38 1 3.6753 -1.6613 -2.3344 39 1 4.5726 -4.1871 -5.9961 40 1 4.1538 -3.0206 -8.1205 41 1 3.3315 -0.7021 -8.1151 42 1 2.9212 0.4629 -5.9877 43 1 3.3296 -0.6863 -3.8518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202447441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:46 Heat of formation + Delta-G solvation = -5.578745 kcal Electronic energy + Delta-G solvation = -28852.214076 eV Core-core repulsion = 24862.371298 eV Total energy + Delta-G solvation = -3989.842778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46426 -41.17182 -40.26288 -39.01045 -37.00689 -35.87112 -34.75613 -33.56779 -32.64503 -32.11837 -31.90702 -30.04935 -27.83722 -25.67140 -24.76004 -24.26068 -23.64945 -23.25936 -21.95776 -21.16386 -19.72036 -19.15012 -18.42071 -18.01148 -17.54325 -17.21904 -17.12895 -16.68649 -16.48346 -16.24960 -16.10600 -15.53941 -15.43956 -15.07113 -14.83785 -14.70357 -14.44775 -14.35669 -14.29843 -13.96136 -13.84433 -13.58528 -13.39542 -12.86424 -12.72791 -12.67485 -12.43633 -12.10115 -12.06742 -11.88276 -11.72736 -11.24803 -10.94321 -10.81584 -10.72999 -10.49713 -10.02666 -10.02216 -9.99347 -9.60523 -8.30239 -6.40794 -0.30553 0.07138 0.29838 0.37688 1.26084 1.39768 1.41515 1.47021 1.53337 2.22916 2.33637 2.60026 2.85697 2.94907 3.02297 3.44580 3.51603 3.82774 3.84072 3.84839 3.96937 4.05986 4.07019 4.22170 4.36831 4.42410 4.46259 4.48762 4.62304 4.68584 4.73700 4.78060 4.83492 4.96829 5.02310 5.17689 5.21314 5.33161 5.36548 5.38241 5.44759 5.46638 5.68820 5.74961 5.91355 6.10882 6.40959 6.67014 6.91601 6.97962 7.23443 7.32448 8.85446 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008247 B = 0.004551 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.202669 B = 6150.435839 C = 8419.421898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.029 3.971 3 Si 0.930 3.070 4 H -0.251 1.251 5 H -0.287 1.287 6 H -0.241 1.241 7 C -0.547 4.547 8 H 0.032 0.968 9 C 0.215 3.785 10 N -0.594 5.594 11 C 0.176 3.824 12 C -0.158 4.158 13 C -0.066 4.066 14 C -0.171 4.171 15 C 0.095 3.905 16 N -0.507 5.507 17 C 0.105 3.895 18 C 0.696 3.304 19 O -0.582 6.582 20 N -0.677 5.677 21 C 0.561 3.439 22 O -0.519 6.519 23 C -0.159 4.159 24 C -0.071 4.071 25 C -0.124 4.124 26 C -0.079 4.079 27 C -0.127 4.127 28 C -0.091 4.091 29 H 0.270 0.730 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.161 0.839 36 H 0.187 0.813 37 H 0.162 0.838 38 H 0.422 0.578 39 H 0.128 0.872 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.387 1.941 -8.581 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.171 4.171 3 Si 0.752 3.248 4 H -0.175 1.175 5 H -0.213 1.213 6 H -0.164 1.164 7 C -0.585 4.585 8 H 0.051 0.949 9 C 0.094 3.906 10 N -0.328 5.328 11 C 0.053 3.947 12 C -0.162 4.162 13 C -0.092 4.092 14 C -0.191 4.191 15 C -0.062 4.062 16 N -0.215 5.215 17 C -0.052 4.052 18 C 0.398 3.602 19 O -0.459 6.459 20 N -0.343 5.343 21 C 0.351 3.649 22 O -0.394 6.394 23 C -0.163 4.163 24 C -0.090 4.090 25 C -0.142 4.142 26 C -0.097 4.097 27 C -0.145 4.145 28 C -0.110 4.110 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.179 0.821 36 H 0.204 0.796 37 H 0.179 0.821 38 H 0.263 0.737 39 H 0.146 0.854 40 H 0.180 0.820 41 H 0.184 0.816 42 H 0.173 0.827 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.922 1.288 -8.021 15.263 hybrid contribution -0.893 0.153 -0.077 0.909 sum 12.029 1.441 -8.098 14.573 Atomic orbital electron populations 1.70042 1.08408 1.28538 1.50372 1.25713 0.95320 1.02743 0.93357 0.85971 0.79818 0.78625 0.80339 1.17548 1.21303 1.16383 1.21414 0.90649 0.93438 1.53018 0.94944 1.19707 0.93396 0.78631 0.98913 1.47291 1.66217 1.15768 1.03531 1.20162 0.92039 0.98133 0.84397 1.21241 0.97191 0.97585 1.00133 1.21753 0.93290 0.98387 0.95809 1.22443 0.97356 0.99906 0.99383 1.23324 0.99259 0.90160 0.93505 1.67747 1.00783 1.30204 1.22811 1.22845 0.94080 0.94736 0.93494 1.16166 0.78604 0.84249 0.81164 1.90910 1.51672 1.16822 1.86490 1.44130 1.64547 1.19912 1.05727 1.19035 0.75963 0.85754 0.84142 1.90800 1.42710 1.18120 1.87741 1.19749 1.08538 0.96270 0.91709 1.21408 0.96095 1.00158 0.91292 1.21513 0.99289 0.95508 0.97887 1.21889 0.94201 0.94247 0.99359 1.21501 0.99833 1.01667 0.91478 1.21566 0.96213 0.92789 1.00446 0.92086 0.92421 0.94456 0.87821 0.90184 0.85587 0.82103 0.79598 0.82069 0.73711 0.85356 0.82046 0.81617 0.82660 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.42 13.96 21.45 0.30 -52.12 16 2 C 0.03 1.46 5.47 84.65 0.46 1.92 16 3 Si 0.93 36.38 27.47 68.60 1.88 38.27 16 4 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 5 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.24 -8.54 6.54 99.48 0.65 -7.89 16 7 C -0.55 -27.16 9.94 25.60 0.25 -26.91 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 9 C 0.22 8.63 3.99 85.63 0.34 8.97 16 10 N -0.59 -23.65 2.44 -848.61 -2.07 -25.72 16 11 C 0.18 6.19 5.56 85.63 0.48 6.66 16 12 C -0.16 -4.98 5.48 -19.78 -0.11 -5.09 16 13 C -0.07 -1.97 9.86 22.46 0.22 -1.75 16 14 C -0.17 -4.07 10.11 22.36 0.23 -3.84 16 15 C 0.09 2.21 11.18 84.69 0.95 3.16 16 16 N -0.51 -14.61 10.36 -195.85 -2.03 -16.63 16 17 C 0.11 3.15 10.86 84.67 0.92 4.07 16 18 C 0.70 30.19 8.22 179.06 1.47 31.66 16 19 O -0.58 -28.23 13.97 18.88 0.26 -27.97 16 20 N -0.68 -26.45 5.05 -443.20 -2.24 -28.69 16 21 C 0.56 21.83 7.71 86.76 0.67 22.50 16 22 O -0.52 -23.92 14.74 19.02 0.28 -23.64 16 23 C -0.16 -4.81 5.87 -20.09 -0.12 -4.93 16 24 C -0.07 -1.79 9.60 22.53 0.22 -1.58 16 25 C -0.12 -2.16 10.03 22.23 0.22 -1.94 16 26 C -0.08 -1.19 10.04 22.33 0.22 -0.97 16 27 C -0.13 -2.38 10.03 22.23 0.22 -2.16 16 28 C -0.09 -2.33 9.54 22.53 0.21 -2.11 16 29 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.06 2.18 7.13 -2.39 -0.02 2.17 16 31 H 0.04 1.38 5.79 -2.38 -0.01 1.37 16 32 H 0.10 3.44 8.02 -2.39 -0.02 3.42 16 33 H 0.08 2.94 7.37 -2.38 -0.02 2.92 16 34 H 0.13 4.10 7.71 -2.91 -0.02 4.08 16 35 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 36 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.16 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.42 14.90 4.46 -92.71 -0.41 14.48 16 39 H 0.13 3.37 7.65 -2.91 -0.02 3.35 16 40 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 42 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 43 H 0.13 3.21 6.41 -2.91 -0.02 3.19 16 Total: -1.00 -74.34 371.50 3.84 -70.50 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: 0.59 Total: 38.35 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: 6.87 Total: 27.66 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -6.04 Total: -123.17 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: 0.54 Total: -51.61 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 1.88 Total: 38.27 kcal Total: -74.34 3.84 -70.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202447441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.919 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds