Wall clock time and date at job start Tue Mar 31 2020 22:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99868 * 2 1 4 4 H 1.48503 * 109.47313 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47265 * 300.00260 * 3 2 1 6 6 H 1.48505 * 109.46864 * 60.00374 * 3 2 1 7 7 C 1.38805 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00208 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99456 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99808 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47522 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99675 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00722 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00467 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47303 * 179.97438 * 14 13 11 16 16 C 1.53119 * 109.52412 * 175.00100 * 15 14 13 17 17 C 1.53040 * 109.27917 * 177.55898 * 16 15 14 18 18 N 1.46842 * 109.52651 * 300.82804 * 17 16 15 19 19 C 1.46899 * 111.00041 * 185.83838 * 18 17 16 20 20 C 1.50703 * 109.47107 * 169.99728 * 19 18 17 21 21 C 1.41374 * 126.80043 * 94.70935 * 20 19 18 22 22 C 1.35456 * 103.98370 * 179.88628 * 21 20 19 23 23 O 1.34037 * 106.44500 * 0.37183 * 22 21 20 24 24 N 1.20921 * 111.56830 * 359.74291 * 23 22 21 25 25 C 1.46843 * 111.20263 * 61.73690 * 18 17 16 26 26 C 1.53043 * 109.52446 * 298.26417 * 25 18 17 27 27 H 0.96994 * 119.99901 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46952 * 59.99905 * 10 9 7 29 29 H 1.08996 * 109.47311 * 299.99970 * 10 9 7 30 30 H 0.97005 * 119.99377 * 0.02562 * 13 11 10 31 31 H 1.09008 * 109.46915 * 60.00404 * 14 13 11 32 32 H 1.09002 * 109.47619 * 300.00332 * 14 13 11 33 33 H 1.09007 * 109.52135 * 54.87891 * 15 14 13 34 34 H 1.09002 * 109.50021 * 57.62626 * 16 15 14 35 35 H 1.09003 * 109.53874 * 297.52271 * 16 15 14 36 36 H 1.08998 * 109.46221 * 180.80268 * 17 16 15 37 37 H 1.09002 * 109.44829 * 60.83620 * 17 16 15 38 38 H 1.09002 * 109.47043 * 289.99708 * 19 18 17 39 39 H 1.09001 * 109.47354 * 49.99769 * 19 18 17 40 40 H 1.07997 * 128.01406 * 0.02562 * 21 20 19 41 41 H 1.07999 * 126.77605 * 180.13487 * 22 21 20 42 42 H 1.09004 * 109.46019 * 58.27642 * 25 18 17 43 43 H 1.08999 * 109.46883 * 178.24462 * 25 18 17 44 44 H 1.09007 * 109.49669 * 299.23395 * 26 25 18 45 45 H 1.09001 * 109.53519 * 179.13897 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8443 -6.3431 -0.0033 14 6 2.3306 -7.7150 -0.0023 15 6 3.5027 -8.6985 -0.0051 16 6 2.9709 -10.1287 0.1217 17 6 4.1426 -11.1111 0.0571 18 7 4.8528 -10.9449 -1.2174 19 6 5.8985 -11.9645 -1.3742 20 6 6.4361 -11.9204 -2.7814 21 6 7.5760 -11.2152 -3.2308 22 6 7.6342 -11.4965 -4.5545 23 8 6.5913 -12.2959 -4.8187 24 7 5.9397 -12.5196 -3.8250 25 6 5.4130 -9.5931 -1.3408 26 6 4.2792 -8.5654 -1.3180 27 1 -0.4850 0.8400 0.0004 28 1 3.1253 -3.7316 0.8875 29 1 3.1238 -3.7309 -0.8925 30 1 3.8011 -6.1834 -0.0043 31 1 1.7204 -7.8751 -0.8913 32 1 1.7236 -7.8752 0.8888 33 1 4.1635 -8.4799 0.8339 34 1 2.2790 -10.3334 -0.6954 35 1 2.4530 -10.2420 1.0742 36 1 3.7659 -12.1311 0.1328 37 1 4.8269 -10.9145 0.8825 38 1 6.7068 -11.7673 -0.6701 39 1 5.4773 -12.9503 -1.1770 40 1 8.2467 -10.5973 -2.6522 41 1 8.3726 -11.1429 -5.2588 42 1 6.0915 -9.4039 -0.5089 43 1 5.9591 -9.5106 -2.2805 44 1 3.6079 -8.7456 -2.1577 45 1 4.6960 -7.5612 -1.3942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222420682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:32 Heat of formation + Delta-G solvation = 20.621351 kcal Electronic energy + Delta-G solvation = -25976.482571 eV Core-core repulsion = 22123.219865 eV Total energy + Delta-G solvation = -3853.262706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.32015 -39.90655 -38.87145 -36.16077 -34.42450 -32.78383 -32.42527 -32.00316 -31.22017 -29.72110 -27.96676 -25.63288 -25.25465 -23.77582 -23.41062 -22.27703 -21.14554 -20.43178 -19.90267 -18.16479 -17.97464 -17.83295 -16.54437 -16.13489 -15.93265 -15.82073 -15.38557 -15.04718 -14.80481 -14.78049 -14.40824 -14.06037 -13.92610 -13.65012 -13.44053 -13.15190 -12.86431 -12.73001 -12.61035 -12.55251 -12.21531 -11.75381 -11.57565 -11.53443 -11.07248 -11.02078 -10.99209 -10.91386 -10.74544 -10.65138 -10.51879 -10.03345 -9.80017 -9.37377 -9.07586 -8.84870 -8.79595 -8.22160 -6.49309 -6.21494 -3.91793 1.11972 1.76184 2.87489 3.05748 3.13190 3.21425 3.28401 3.33280 3.46906 3.71881 3.74203 4.13601 4.20513 4.35493 4.42939 4.52369 4.69505 4.73957 4.80598 4.89511 4.97742 5.02871 5.12565 5.13637 5.15819 5.17530 5.23737 5.29927 5.41395 5.46017 5.54528 5.55924 5.62004 5.67032 5.80601 5.83372 5.90639 5.94220 6.12834 6.14591 6.54574 6.62686 6.66080 7.60011 7.73556 7.89721 8.35634 8.64677 9.23853 10.85996 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.001795 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.180472 B =15594.343107 C =16601.930050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.127 3.873 15 C -0.099 4.099 16 C -0.109 4.109 17 C 0.060 3.940 18 N -0.533 5.533 19 C 0.133 3.867 20 C 0.023 3.977 21 C -0.234 4.234 22 C -0.059 4.059 23 O 0.100 5.900 24 N -0.347 5.347 25 C 0.055 3.945 26 C -0.112 4.112 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.396 0.604 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.169 0.831 41 H 0.216 0.784 42 H 0.035 0.965 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.886 -26.247 -3.404 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.393 5.393 14 C 0.003 3.997 15 C -0.118 4.118 16 C -0.147 4.147 17 C -0.068 4.068 18 N -0.259 5.259 19 C 0.005 3.995 20 C -0.137 4.137 21 C -0.256 4.256 22 C -0.140 4.140 23 O 0.033 5.967 24 N -0.049 5.049 25 C -0.073 4.073 26 C -0.150 4.150 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.230 0.770 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.187 0.813 41 H 0.233 0.767 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.296 -27.349 -3.964 31.586 hybrid contribution 3.814 2.106 0.922 4.453 sum 19.110 -25.243 -3.042 31.807 Atomic orbital electron populations 1.70026 1.05945 1.27336 1.46948 1.25002 0.95036 0.99047 0.94583 0.86114 0.79560 0.81895 0.77899 1.19641 1.20558 1.20579 1.22908 0.94927 0.91662 1.58797 0.90900 1.85414 1.04988 0.96326 1.96699 1.23527 1.06521 0.95507 1.04829 1.20298 0.86548 0.86290 0.75209 1.90705 1.15391 1.85633 1.47499 1.46012 1.09795 1.05592 1.77911 1.21296 0.95516 0.80457 1.02423 1.21447 0.96957 0.95056 0.98356 1.21561 0.97446 0.92777 1.02945 1.22080 0.95611 1.00238 0.88861 1.61843 1.26645 1.02724 1.34653 1.20282 0.93631 0.97335 0.88277 1.23418 0.94947 0.98395 0.96972 1.22768 1.01241 1.06142 0.95404 1.26042 0.93740 0.96326 0.97875 1.84879 1.30492 1.50969 1.30405 1.73878 1.16391 1.20598 0.94068 1.22158 0.96272 0.87848 1.01009 1.21661 0.97318 0.98058 0.97967 0.92237 0.89314 0.89292 0.77000 0.91500 0.91613 0.90749 0.90451 0.90768 0.90345 0.94539 0.92420 0.88932 0.81310 0.76732 0.94648 0.90645 0.90662 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 11 C 0.53 9.98 7.85 -10.99 -0.09 9.90 16 12 O -0.52 -11.97 15.86 5.55 0.09 -11.89 16 13 N -0.74 -9.79 5.31 -60.30 -0.32 -10.11 16 14 C 0.13 1.47 5.07 -4.05 -0.02 1.45 16 15 C -0.10 -0.82 2.29 -90.50 -0.21 -1.02 16 16 C -0.11 -0.82 5.38 -26.65 -0.14 -0.96 16 17 C 0.06 0.40 5.46 -3.84 -0.02 0.38 16 18 N -0.53 -4.17 4.65 -236.11 -1.10 -5.27 16 19 C 0.13 0.92 5.56 -4.98 -0.03 0.89 16 20 C 0.02 0.18 6.01 -82.10 -0.49 -0.31 16 21 C -0.23 -1.35 10.01 -39.38 -0.39 -1.74 16 22 C -0.06 -0.29 12.30 29.74 0.37 0.07 16 23 O 0.10 0.84 11.20 17.18 0.19 1.04 16 24 N -0.35 -3.53 12.07 33.42 0.40 -3.13 16 25 C 0.05 0.41 5.30 -3.83 -0.02 0.39 16 26 C -0.11 -0.93 5.22 -26.65 -0.14 -1.07 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.40 4.08 7.69 -40.82 -0.31 3.77 16 31 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.47 8.02 -51.93 -0.42 0.06 16 37 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.06 0.31 8.12 -51.93 -0.42 -0.11 16 39 H 0.09 0.62 7.99 -51.93 -0.41 0.20 16 40 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.22 0.16 8.06 -52.49 -0.42 -0.26 16 42 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.58 6.24 -51.93 -0.32 0.26 16 44 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.07 0.55 7.27 -51.93 -0.38 0.18 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -36.44 384.33 -9.10 -45.54 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.89 Total: -1.07 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.77 Total: -7.91 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.28 Total: -44.03 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.28 Total: -10.85 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.44 -9.10 -45.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222420682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.158 kcal (2) G-P(sol) polarization free energy of solvation -36.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds