Wall clock time and date at job start Tue Mar 31 2020 22:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99868 * 2 1 4 4 H 1.48503 * 109.47313 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47265 * 300.00260 * 3 2 1 6 6 H 1.48505 * 109.46864 * 60.00374 * 3 2 1 7 7 C 1.38805 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00208 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99456 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99808 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47522 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99675 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00722 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00467 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47303 * 179.97438 * 14 13 11 16 16 C 1.53119 * 109.52412 * 175.00100 * 15 14 13 17 17 C 1.53040 * 109.27917 * 177.55898 * 16 15 14 18 18 N 1.46842 * 109.52651 * 300.82804 * 17 16 15 19 19 C 1.46899 * 111.00041 * 185.83838 * 18 17 16 20 20 C 1.50703 * 109.47107 * 169.99728 * 19 18 17 21 21 C 1.41374 * 126.80043 * 94.70935 * 20 19 18 22 22 C 1.35456 * 103.98370 * 179.88628 * 21 20 19 23 23 O 1.34037 * 106.44500 * 0.37183 * 22 21 20 24 24 N 1.20921 * 111.56830 * 359.74291 * 23 22 21 25 25 C 1.46843 * 111.20263 * 61.73690 * 18 17 16 26 26 C 1.53043 * 109.52446 * 298.26417 * 25 18 17 27 27 H 0.96994 * 119.99901 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46952 * 59.99905 * 10 9 7 29 29 H 1.08996 * 109.47311 * 299.99970 * 10 9 7 30 30 H 0.97005 * 119.99377 * 0.02562 * 13 11 10 31 31 H 1.09008 * 109.46915 * 60.00404 * 14 13 11 32 32 H 1.09002 * 109.47619 * 300.00332 * 14 13 11 33 33 H 1.09007 * 109.52135 * 54.87891 * 15 14 13 34 34 H 1.09002 * 109.50021 * 57.62626 * 16 15 14 35 35 H 1.09003 * 109.53874 * 297.52271 * 16 15 14 36 36 H 1.08998 * 109.46221 * 180.80268 * 17 16 15 37 37 H 1.09002 * 109.44829 * 60.83620 * 17 16 15 38 38 H 1.09002 * 109.47043 * 289.99708 * 19 18 17 39 39 H 1.09001 * 109.47354 * 49.99769 * 19 18 17 40 40 H 1.07997 * 128.01406 * 0.02562 * 21 20 19 41 41 H 1.07999 * 126.77605 * 180.13487 * 22 21 20 42 42 H 1.09004 * 109.46019 * 58.27642 * 25 18 17 43 43 H 1.08999 * 109.46883 * 178.24462 * 25 18 17 44 44 H 1.09007 * 109.49669 * 299.23395 * 26 25 18 45 45 H 1.09001 * 109.53519 * 179.13897 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8443 -6.3431 -0.0033 14 6 2.3306 -7.7150 -0.0023 15 6 3.5027 -8.6985 -0.0051 16 6 2.9709 -10.1287 0.1217 17 6 4.1426 -11.1111 0.0571 18 7 4.8528 -10.9449 -1.2174 19 6 5.8985 -11.9645 -1.3742 20 6 6.4361 -11.9204 -2.7814 21 6 7.5760 -11.2152 -3.2308 22 6 7.6342 -11.4965 -4.5545 23 8 6.5913 -12.2959 -4.8187 24 7 5.9397 -12.5196 -3.8250 25 6 5.4130 -9.5931 -1.3408 26 6 4.2792 -8.5654 -1.3180 27 1 -0.4850 0.8400 0.0004 28 1 3.1253 -3.7316 0.8875 29 1 3.1238 -3.7309 -0.8925 30 1 3.8011 -6.1834 -0.0043 31 1 1.7204 -7.8751 -0.8913 32 1 1.7236 -7.8752 0.8888 33 1 4.1635 -8.4799 0.8339 34 1 2.2790 -10.3334 -0.6954 35 1 2.4530 -10.2420 1.0742 36 1 3.7659 -12.1311 0.1328 37 1 4.8269 -10.9145 0.8825 38 1 6.7068 -11.7673 -0.6701 39 1 5.4773 -12.9503 -1.1770 40 1 8.2467 -10.5973 -2.6522 41 1 8.3726 -11.1429 -5.2588 42 1 6.0915 -9.4039 -0.5089 43 1 5.9591 -9.5106 -2.2805 44 1 3.6079 -8.7456 -2.1577 45 1 4.6960 -7.5612 -1.3942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222420682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:32 Heat of formation + Delta-G solvation = -5.855892 kcal Electronic energy + Delta-G solvation = -25977.630710 eV Core-core repulsion = 22123.219865 eV Total energy + Delta-G solvation = -3854.410845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.84779 -40.87656 -39.97468 -37.00411 -35.25651 -34.58430 -33.65044 -32.53149 -31.81000 -31.10308 -28.83118 -27.67014 -26.20191 -24.35331 -23.93025 -23.01567 -21.80570 -21.59809 -20.66153 -19.81744 -18.64507 -18.52501 -17.83784 -17.29420 -16.90020 -16.87364 -16.58464 -16.36225 -15.85084 -15.65926 -15.36312 -15.26665 -14.79583 -14.54804 -14.41212 -14.20147 -14.02803 -13.83808 -13.33076 -13.28973 -13.20086 -13.15767 -12.91170 -12.73558 -12.59481 -12.16894 -12.09836 -11.76942 -11.67867 -11.54022 -11.31066 -11.15875 -11.06862 -10.91300 -10.51210 -10.26783 -10.10745 -9.30972 -8.66910 -8.34656 -6.12827 0.67479 1.27446 1.28886 1.41751 1.47735 1.58685 1.62030 2.26300 2.31449 2.51206 2.96420 2.99525 3.25401 3.32583 3.63196 3.71513 3.75827 3.87393 4.00658 4.19137 4.25699 4.29532 4.33573 4.34755 4.43017 4.49909 4.50782 4.57016 4.59197 4.71000 4.72664 4.82228 4.87351 4.89256 4.91526 5.02426 5.15507 5.18125 5.22821 5.38739 5.42293 5.49566 6.03201 6.10870 6.20233 6.51353 7.06640 7.25502 7.41589 8.74852 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018258 B = 0.001795 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.180472 B =15594.343107 C =16601.930050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.569 6.569 13 N -0.710 5.710 14 C 0.128 3.872 15 C -0.085 4.085 16 C -0.108 4.108 17 C 0.063 3.937 18 N -0.552 5.552 19 C 0.134 3.866 20 C 0.011 3.989 21 C -0.240 4.240 22 C -0.049 4.049 23 O 0.081 5.919 24 N -0.391 5.391 25 C 0.060 3.940 26 C -0.111 4.111 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.415 0.585 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.193 0.807 41 H 0.256 0.744 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.581 -26.119 -2.883 34.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.280 4.280 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.364 5.364 14 C 0.004 3.996 15 C -0.104 4.104 16 C -0.146 4.146 17 C -0.064 4.064 18 N -0.278 5.278 19 C 0.006 3.994 20 C -0.148 4.148 21 C -0.262 4.262 22 C -0.130 4.130 23 O 0.016 5.984 24 N -0.097 5.097 25 C -0.067 4.067 26 C -0.148 4.148 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.253 0.747 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.210 0.790 41 H 0.272 0.728 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.057 -27.263 -3.455 33.442 hybrid contribution 2.722 1.936 0.729 3.419 sum 21.778 -25.327 -2.726 33.514 Atomic orbital electron populations 1.70193 1.08011 1.28542 1.48095 1.26161 0.95992 1.03417 0.93789 0.84884 0.78638 0.76236 0.78043 1.17899 1.19976 1.19965 1.23236 0.95361 0.91900 1.58702 0.89803 1.85622 1.10745 0.99379 1.97047 1.23367 1.03477 0.94291 1.06841 1.20099 0.86239 0.86781 0.75136 1.90695 1.17579 1.86171 1.50293 1.45745 1.10194 1.05110 1.75367 1.21409 0.96922 0.79931 1.01338 1.21361 0.95633 0.94316 0.99075 1.21549 0.97726 0.92522 1.02811 1.22062 0.95304 1.00140 0.88909 1.61790 1.27431 1.03120 1.35453 1.20324 0.93975 0.96906 0.88171 1.23818 0.95617 0.98267 0.97106 1.23103 1.00918 1.06309 0.95866 1.26860 0.92923 0.94534 0.98663 1.84821 1.31489 1.51898 1.30214 1.73876 1.18154 1.22663 0.95037 1.22087 0.95830 0.87294 1.01502 1.21634 0.97326 0.98931 0.96956 0.92014 0.87075 0.87191 0.74735 0.93217 0.92222 0.88861 0.92168 0.89806 0.89890 0.93050 0.90401 0.89322 0.78963 0.72792 0.92978 0.91018 0.92978 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.26 13.22 21.65 0.29 -55.98 16 2 C 0.01 0.63 5.49 84.86 0.47 1.09 16 3 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.05 9.50 67.96 0.65 -30.41 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.16 -8.67 20.57 -56.49 -1.16 -9.83 16 10 C -0.13 -5.06 6.16 71.23 0.44 -4.62 16 11 C 0.53 19.69 7.85 87.66 0.69 20.38 16 12 O -0.57 -26.91 15.86 -3.05 -0.05 -26.96 16 13 N -0.71 -17.56 5.31 -463.06 -2.46 -20.02 16 14 C 0.13 2.84 5.07 86.38 0.44 3.28 16 15 C -0.08 -1.22 2.29 -10.72 -0.02 -1.25 16 16 C -0.11 -1.46 5.38 30.65 0.16 -1.30 16 17 C 0.06 0.72 5.46 86.33 0.47 1.19 16 18 N -0.55 -7.74 4.65 -900.93 -4.19 -11.93 16 19 C 0.13 1.64 5.56 85.56 0.48 2.12 16 20 C 0.01 0.17 6.01 43.58 0.26 0.43 16 21 C -0.24 -2.26 10.01 22.40 0.22 -2.04 16 22 C -0.05 -0.40 12.30 67.18 0.83 0.43 16 23 O 0.08 1.33 11.20 71.66 0.80 2.13 16 24 N -0.39 -8.00 12.07 -49.56 -0.60 -8.60 16 25 C 0.06 0.75 5.30 86.33 0.46 1.21 16 26 C -0.11 -1.63 5.22 30.65 0.16 -1.47 16 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 29 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 30 H 0.42 7.22 7.69 -92.70 -0.71 6.51 16 31 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.88 8.02 -2.39 -0.02 0.86 16 37 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 39 H 0.09 1.12 7.99 -2.39 -0.02 1.10 16 40 H 0.19 0.73 8.06 -2.91 -0.02 0.70 16 41 H 0.26 -0.45 8.06 -2.91 -0.02 -0.47 16 42 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.07 0.96 6.24 -2.39 -0.01 0.94 16 44 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.08 1.02 7.27 -2.39 -0.02 1.00 16 Total: -1.00 -82.91 384.33 0.64 -82.27 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.28 Total: 14.33 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 5.69 Total: -10.95 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -6.96 Total: -96.52 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: 0.75 Total: -24.82 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -82.91 0.64 -82.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222420682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.411 kcal (2) G-P(sol) polarization free energy of solvation -82.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds