Wall clock time and date at job start Tue Mar 31 2020 23:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33820 * 124.52170 * 2 1 4 4 C 1.37477 * 115.09995 * 179.97438 * 3 2 1 5 5 C 1.36653 * 113.29731 * 359.97438 * 4 3 2 6 6 C 1.46575 * 125.45735 * 180.26523 * 5 4 3 7 7 O 1.21697 * 120.00168 * 359.72040 * 6 5 4 8 8 N 1.34778 * 119.99949 * 179.71779 * 6 5 4 9 9 C 1.46497 * 120.00222 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47491 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47325 * 180.02562 * 10 9 8 12 12 N 1.46905 * 109.47357 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99698 * 66.04345 * 12 11 10 14 14 C 1.46899 * 111.00333 * 189.99717 * 12 11 10 15 15 C 1.50695 * 109.47013 * 170.00075 * 14 12 11 16 16 O 1.21287 * 120.00473 * 359.97438 * 15 14 12 17 17 N 1.34780 * 119.99809 * 180.02562 * 15 14 12 18 18 C 1.37104 * 119.99979 * 179.97438 * 17 15 14 19 19 H 1.07995 * 119.99918 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99763 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00360 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99548 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47089 * 90.00436 * 22 20 18 24 24 H 1.48505 * 109.47146 * 209.99944 * 22 20 18 25 25 H 1.48494 * 109.47641 * 330.00424 * 22 20 18 26 26 S 1.70614 * 124.52091 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47144 * 300.02247 * 1 2 3 29 29 H 1.09002 * 109.46816 * 60.01466 * 1 2 3 30 30 H 1.07995 * 122.45037 * 359.93942 * 3 2 1 31 31 H 1.07990 * 123.35307 * 179.97438 * 4 3 2 32 32 H 0.97005 * 120.00165 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47224 * 300.00200 * 9 8 6 34 34 H 1.09006 * 109.47235 * 60.00336 * 9 8 6 35 35 H 1.09004 * 109.47012 * 300.00283 * 10 9 8 36 36 H 1.08998 * 109.47249 * 59.99927 * 10 9 8 37 37 H 1.09004 * 109.47094 * 299.99972 * 11 10 9 38 38 H 1.08998 * 109.47686 * 59.99931 * 11 10 9 39 39 H 1.08994 * 109.47191 * 60.00127 * 13 12 11 40 40 H 1.08994 * 109.46722 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.47040 * 299.99830 * 13 12 11 42 42 H 1.09002 * 109.46909 * 289.99944 * 14 12 11 43 43 H 1.09003 * 109.46967 * 49.99983 * 14 12 11 44 44 H 0.96994 * 119.99810 * 0.02562 * 17 15 14 45 45 H 0.96991 * 120.00242 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3123 -0.9883 0.0079 7 8 6.2658 -0.2321 0.0076 8 7 5.5096 -2.3215 0.0140 9 6 6.8718 -2.8605 0.0198 10 6 6.8155 -4.3894 0.0254 11 6 8.2381 -4.9522 0.0321 12 7 8.1840 -6.4202 0.0381 13 6 7.6119 -6.9311 -1.2148 14 6 9.5136 -6.9951 0.2826 15 6 9.3833 -8.4766 0.5258 16 8 8.2904 -9.0019 0.4987 17 7 10.4812 -9.2178 0.7745 18 6 10.3626 -10.5655 0.9963 19 1 9.3896 -11.0333 0.9713 20 6 11.4946 -11.3297 1.2522 21 7 12.6786 -10.7606 1.2821 22 14 11.3330 -13.1661 1.5537 23 1 11.4395 -13.8910 0.2620 24 1 12.4167 -13.6155 2.4642 25 1 10.0146 -13.4519 2.1744 26 16 2.4739 -1.4057 0.0006 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5142 0.8898 29 1 -0.3633 0.5136 -0.8901 30 1 1.8430 2.0964 -0.0010 31 1 4.3550 1.6702 0.0002 32 1 4.7496 -2.9243 0.0139 33 1 7.4010 -2.5201 -0.8703 34 1 7.3965 -2.5126 0.9097 35 1 6.2862 -4.7302 0.9153 36 1 6.2910 -4.7370 -0.8646 37 1 8.7678 -4.6114 -0.8576 38 1 8.7623 -4.6047 0.9223 39 1 8.2276 -6.6075 -2.0539 40 1 7.5831 -8.0202 -1.1835 41 1 6.6000 -6.5446 -1.3363 42 1 10.1488 -6.8241 -0.5865 43 1 9.9591 -6.5211 1.1572 44 1 11.3550 -8.7975 0.7973 45 1 13.4687 -11.2939 1.4611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231301228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:28 Heat of formation + Delta-G solvation = -41.101629 kcal Electronic energy + Delta-G solvation = -25235.796018 eV Core-core repulsion = 21379.856803 eV Total energy + Delta-G solvation = -3855.939215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.05194 -38.68981 -38.18957 -36.91160 -35.25003 -33.85483 -32.66016 -31.61705 -31.20422 -28.22217 -27.68783 -26.23489 -24.78567 -23.96499 -22.85944 -21.63675 -20.91909 -19.55262 -19.12199 -18.27401 -17.82195 -16.71060 -16.25402 -16.11862 -15.81894 -15.38680 -15.20502 -14.80714 -14.64244 -14.53663 -14.21523 -14.04452 -13.67743 -13.55066 -13.42512 -13.33932 -12.84856 -12.58824 -12.30592 -12.25613 -12.12725 -11.87548 -11.72066 -11.47646 -11.37842 -11.25164 -11.23762 -10.91664 -10.73662 -10.38522 -10.37276 -10.20897 -9.47234 -9.46277 -9.06908 -9.02472 -8.44649 -7.96916 -7.84759 -6.40732 -3.81549 0.07023 0.99641 1.40435 1.96161 2.78298 2.89281 3.18268 3.26961 3.32842 3.91569 3.98692 4.24605 4.25206 4.45015 4.65677 4.80812 4.87066 4.92919 4.95440 5.04146 5.09593 5.12063 5.26230 5.36989 5.40065 5.48443 5.54392 5.58844 5.68558 5.72909 5.74561 5.91312 5.92573 5.96734 5.99692 6.06154 6.13615 6.29733 6.55894 7.10261 7.27061 7.39451 7.56099 7.82692 8.07534 8.63077 9.19184 9.55755 10.07659 10.77048 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029422 B = 0.001498 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.440360 B =18687.729179 C =19379.929457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.193 4.193 3 C -0.159 4.159 4 C -0.049 4.049 5 C -0.272 4.272 6 C 0.590 3.410 7 O -0.530 6.530 8 N -0.725 5.725 9 C 0.121 3.879 10 C -0.129 4.129 11 C 0.058 3.942 12 N -0.519 5.519 13 C 0.020 3.980 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.578 6.578 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.270 1.270 26 S 0.203 5.797 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.399 0.601 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.014 0.986 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.010 23.223 -3.965 30.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.312 4.312 3 C -0.190 4.190 4 C -0.082 4.082 5 C -0.392 4.392 6 C 0.376 3.624 7 O -0.408 6.408 8 N -0.376 5.376 9 C -0.002 4.002 10 C -0.167 4.167 11 C -0.071 4.071 12 N -0.243 5.243 13 C -0.128 4.128 14 C -0.086 4.086 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 S 0.470 5.530 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.233 0.767 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.463 21.584 -3.556 29.954 hybrid contribution 1.052 0.944 -0.482 1.493 sum -19.410 22.528 -4.039 30.009 Atomic orbital electron populations 1.20415 0.87277 1.03335 1.03494 1.24283 1.01649 0.97741 1.07574 1.19958 0.92618 0.99732 1.06651 1.20765 0.96204 0.95193 0.96060 1.24577 0.96841 0.98183 1.19634 1.16934 0.86810 0.82225 0.76394 1.90840 1.41868 1.58036 1.50099 1.45881 1.09812 1.06252 1.75655 1.21398 0.82295 0.93709 1.02840 1.21791 0.98618 0.92429 1.03841 1.21996 0.95622 0.88387 1.01064 1.61547 1.22391 1.04467 1.35866 1.22579 0.98246 1.03871 0.88095 1.21865 0.89822 0.95700 1.01177 1.19738 0.85351 0.87529 0.84426 1.90477 1.26345 1.73040 1.56365 1.41872 1.07756 1.08443 1.62063 1.19699 0.95341 0.82815 1.45005 0.87918 1.25255 0.94651 1.00602 0.97426 1.69609 0.98166 1.36954 1.49600 0.85861 0.78057 0.82143 0.78235 1.20459 1.20941 1.19425 1.83050 0.94236 1.07606 1.68088 0.91131 0.90098 0.90118 0.83742 0.82925 0.76703 0.91153 0.90872 0.90064 0.91019 0.94814 0.90516 0.96778 0.88616 0.92120 0.93445 0.89356 0.77491 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.32 10.33 36.01 0.37 0.05 16 2 C -0.19 -1.20 6.28 -35.86 -0.23 -1.43 16 3 C -0.16 -1.07 10.00 -41.41 -0.41 -1.48 16 4 C -0.05 -0.42 10.01 -40.43 -0.40 -0.82 16 5 C -0.27 -2.56 6.45 -36.79 -0.24 -2.80 16 6 C 0.59 6.79 7.78 -12.90 -0.10 6.69 16 7 O -0.53 -7.91 16.84 5.19 0.09 -7.82 16 8 N -0.72 -6.88 5.55 -61.65 -0.34 -7.23 16 9 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 10 C -0.13 -1.29 5.25 -26.73 -0.14 -1.43 16 11 C 0.06 0.71 4.96 -3.82 -0.02 0.69 16 12 N -0.52 -8.43 4.50 -244.37 -1.10 -9.53 16 13 C 0.02 0.31 8.96 60.07 0.54 0.85 16 14 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 15 C 0.44 10.43 7.47 -10.99 -0.08 10.35 16 16 O -0.58 -15.42 13.91 5.55 0.08 -15.34 16 17 N -0.56 -14.29 5.29 -10.97 -0.06 -14.34 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 S 0.20 1.37 22.08 -107.50 -2.37 -1.01 16 27 H 0.07 0.22 8.11 -51.93 -0.42 -0.21 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.40 2.99 7.59 -40.82 -0.31 2.68 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.70 6.55 -51.93 -0.34 0.36 16 37 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 38 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 41 H 0.06 0.82 6.47 -51.93 -0.34 0.48 16 42 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -33.59 390.88 -9.71 -43.30 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.59 Total: 9.24 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.00 Total: 4.66 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.78 Total: -54.91 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.16 Total: -23.16 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.37 Total: -1.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.59 -9.71 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231301228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.202 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds