Wall clock time and date at job start Tue Mar 31 2020 23:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33820 * 124.52170 * 2 1 4 4 C 1.37477 * 115.09995 * 179.97438 * 3 2 1 5 5 C 1.36653 * 113.29731 * 359.97438 * 4 3 2 6 6 C 1.46575 * 125.45735 * 180.26523 * 5 4 3 7 7 O 1.21697 * 120.00168 * 359.72040 * 6 5 4 8 8 N 1.34778 * 119.99949 * 179.71779 * 6 5 4 9 9 C 1.46497 * 120.00222 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47491 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47325 * 180.02562 * 10 9 8 12 12 N 1.46905 * 109.47357 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99698 * 66.04345 * 12 11 10 14 14 C 1.46899 * 111.00333 * 189.99717 * 12 11 10 15 15 C 1.50695 * 109.47013 * 170.00075 * 14 12 11 16 16 O 1.21287 * 120.00473 * 359.97438 * 15 14 12 17 17 N 1.34780 * 119.99809 * 180.02562 * 15 14 12 18 18 C 1.37104 * 119.99979 * 179.97438 * 17 15 14 19 19 H 1.07995 * 119.99918 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99763 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00360 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99548 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47089 * 90.00436 * 22 20 18 24 24 H 1.48505 * 109.47146 * 209.99944 * 22 20 18 25 25 H 1.48494 * 109.47641 * 330.00424 * 22 20 18 26 26 S 1.70614 * 124.52091 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47144 * 300.02247 * 1 2 3 29 29 H 1.09002 * 109.46816 * 60.01466 * 1 2 3 30 30 H 1.07995 * 122.45037 * 359.93942 * 3 2 1 31 31 H 1.07990 * 123.35307 * 179.97438 * 4 3 2 32 32 H 0.97005 * 120.00165 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47224 * 300.00200 * 9 8 6 34 34 H 1.09006 * 109.47235 * 60.00336 * 9 8 6 35 35 H 1.09004 * 109.47012 * 300.00283 * 10 9 8 36 36 H 1.08998 * 109.47249 * 59.99927 * 10 9 8 37 37 H 1.09004 * 109.47094 * 299.99972 * 11 10 9 38 38 H 1.08998 * 109.47686 * 59.99931 * 11 10 9 39 39 H 1.08994 * 109.47191 * 60.00127 * 13 12 11 40 40 H 1.08994 * 109.46722 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.47040 * 299.99830 * 13 12 11 42 42 H 1.09002 * 109.46909 * 289.99944 * 14 12 11 43 43 H 1.09003 * 109.46967 * 49.99983 * 14 12 11 44 44 H 0.96994 * 119.99810 * 0.02562 * 17 15 14 45 45 H 0.96991 * 120.00242 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3123 -0.9883 0.0079 7 8 6.2658 -0.2321 0.0076 8 7 5.5096 -2.3215 0.0140 9 6 6.8718 -2.8605 0.0198 10 6 6.8155 -4.3894 0.0254 11 6 8.2381 -4.9522 0.0321 12 7 8.1840 -6.4202 0.0381 13 6 7.6119 -6.9311 -1.2148 14 6 9.5136 -6.9951 0.2826 15 6 9.3833 -8.4766 0.5258 16 8 8.2904 -9.0019 0.4987 17 7 10.4812 -9.2178 0.7745 18 6 10.3626 -10.5655 0.9963 19 1 9.3896 -11.0333 0.9713 20 6 11.4946 -11.3297 1.2522 21 7 12.6786 -10.7606 1.2821 22 14 11.3330 -13.1661 1.5537 23 1 11.4395 -13.8910 0.2620 24 1 12.4167 -13.6155 2.4642 25 1 10.0146 -13.4519 2.1744 26 16 2.4739 -1.4057 0.0006 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5142 0.8898 29 1 -0.3633 0.5136 -0.8901 30 1 1.8430 2.0964 -0.0010 31 1 4.3550 1.6702 0.0002 32 1 4.7496 -2.9243 0.0139 33 1 7.4010 -2.5201 -0.8703 34 1 7.3965 -2.5126 0.9097 35 1 6.2862 -4.7302 0.9153 36 1 6.2910 -4.7370 -0.8646 37 1 8.7678 -4.6114 -0.8576 38 1 8.7623 -4.6047 0.9223 39 1 8.2276 -6.6075 -2.0539 40 1 7.5831 -8.0202 -1.1835 41 1 6.6000 -6.5446 -1.3363 42 1 10.1488 -6.8241 -0.5865 43 1 9.9591 -6.5211 1.1572 44 1 11.3550 -8.7975 0.7973 45 1 13.4687 -11.2939 1.4611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231301228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:27 Heat of formation + Delta-G solvation = -65.401841 kcal Electronic energy + Delta-G solvation = -25236.849754 eV Core-core repulsion = 21379.856803 eV Total energy + Delta-G solvation = -3856.992951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89273 -40.35751 -38.81303 -38.21845 -36.31185 -35.78352 -33.33038 -33.21829 -32.42805 -29.45494 -28.61787 -27.31259 -26.43127 -24.65525 -23.88437 -22.42354 -21.92820 -20.96025 -20.22113 -19.82966 -18.93867 -17.84714 -17.32272 -17.03016 -16.77717 -16.54931 -16.50619 -16.27473 -15.79391 -15.73058 -15.22857 -15.00212 -14.97549 -14.66759 -14.61158 -13.99718 -13.74284 -13.47467 -13.43682 -13.33262 -13.02684 -12.94550 -12.84243 -12.72462 -12.69954 -12.50422 -12.38206 -12.33527 -12.11112 -11.90396 -11.66536 -11.44173 -11.28044 -10.30918 -10.25772 -9.98225 -9.63359 -9.55565 -9.18779 -8.44904 -5.93498 -0.54104 0.44126 0.85669 1.35326 1.38902 1.42541 1.55299 1.99457 2.07696 2.11787 2.30156 2.81367 3.22088 3.44372 3.72156 3.86185 3.94993 4.04022 4.12607 4.25858 4.32164 4.38452 4.41140 4.49116 4.55830 4.61255 4.62308 4.67921 4.74440 4.74990 4.79466 5.05155 5.07298 5.08676 5.16905 5.18945 5.24580 5.34000 5.40209 5.42763 5.89906 6.08791 6.23659 6.34321 6.62790 7.01619 7.14945 7.58800 8.14690 8.72535 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029422 B = 0.001498 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.440360 B =18687.729179 C =19379.929457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.186 4.186 3 C -0.170 4.170 4 C -0.052 4.052 5 C -0.308 4.308 6 C 0.587 3.413 7 O -0.575 6.575 8 N -0.716 5.716 9 C 0.127 3.873 10 C -0.115 4.115 11 C 0.058 3.942 12 N -0.537 5.537 13 C 0.024 3.976 14 C 0.057 3.943 15 C 0.441 3.559 16 O -0.614 6.614 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.273 1.273 26 S 0.231 5.769 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.165 0.835 31 H 0.147 0.853 32 H 0.409 0.591 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.028 0.972 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.395 0.605 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.395 23.912 -4.138 32.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.306 4.306 3 C -0.199 4.199 4 C -0.087 4.087 5 C -0.428 4.428 6 C 0.375 3.625 7 O -0.457 6.457 8 N -0.367 5.367 9 C 0.003 3.997 10 C -0.153 4.153 11 C -0.070 4.070 12 N -0.262 5.262 13 C -0.124 4.124 14 C -0.074 4.074 15 C 0.229 3.771 16 O -0.500 6.500 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.198 1.198 26 S 0.498 5.502 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.183 0.817 31 H 0.165 0.835 32 H 0.245 0.755 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.229 0.771 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.858 22.271 -3.736 31.428 hybrid contribution 1.362 0.789 -0.443 1.635 sum -20.496 23.060 -4.179 31.133 Atomic orbital electron populations 1.20563 0.85181 1.04289 1.04698 1.24734 1.03056 0.97283 1.05534 1.20127 0.91753 1.01018 1.07024 1.20941 0.97209 0.94946 0.95570 1.24500 0.96976 0.99135 1.22150 1.17253 0.87293 0.82367 0.75562 1.90803 1.43409 1.59037 1.52431 1.45804 1.10160 1.05965 1.74803 1.21289 0.82430 0.93404 1.02539 1.21643 0.97441 0.92226 1.04038 1.22074 0.97130 0.85621 1.02127 1.61506 1.21464 1.06883 1.36310 1.22469 1.00016 1.01295 0.88576 1.21743 0.91399 0.91425 1.02881 1.20785 0.84220 0.89832 0.82284 1.90455 1.27645 1.74542 1.57313 1.41948 1.08473 1.07989 1.62911 1.19667 0.94893 0.84424 1.47220 0.90263 1.26025 0.94071 1.04634 0.96553 1.69671 0.98614 1.38458 1.49500 0.84930 0.78001 0.76985 0.78429 1.19666 1.19635 1.19778 1.82887 0.92597 1.07251 1.67436 0.90347 0.88845 0.88800 0.81706 0.83507 0.75481 0.91348 0.91392 0.90379 0.90288 0.93497 0.89687 0.95386 0.92760 0.89797 0.91570 0.87276 0.77081 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 10.33 71.24 0.74 0.35 16 2 C -0.19 -1.92 6.28 24.68 0.15 -1.77 16 3 C -0.17 -2.02 10.00 21.09 0.21 -1.81 16 4 C -0.05 -0.89 10.01 21.72 0.22 -0.67 16 5 C -0.31 -5.70 6.45 24.08 0.16 -5.55 16 6 C 0.59 13.60 7.78 86.42 0.67 14.27 16 7 O -0.57 -17.67 16.84 -4.34 -0.07 -17.74 16 8 N -0.72 -13.09 5.55 -467.18 -2.59 -15.69 16 9 C 0.13 2.35 5.67 86.38 0.49 2.84 16 10 C -0.12 -2.10 5.25 30.59 0.16 -1.94 16 11 C 0.06 1.29 4.96 86.30 0.43 1.72 16 12 N -0.54 -16.69 4.50 -927.06 -4.17 -20.86 16 13 C 0.02 0.74 8.96 127.69 1.14 1.89 16 14 C 0.06 1.95 5.45 85.56 0.47 2.42 16 15 C 0.44 20.98 7.47 87.65 0.66 21.63 16 16 O -0.61 -33.59 13.91 -3.05 -0.04 -33.64 16 17 N -0.58 -29.64 5.29 -306.99 -1.62 -31.26 16 18 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 21 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 22 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 S 0.23 2.76 22.08 -56.49 -1.25 1.51 16 27 H 0.08 0.25 8.11 -2.39 -0.02 0.23 16 28 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 0.22 8.14 -2.39 -0.02 0.21 16 30 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.15 2.52 8.06 -2.92 -0.02 2.50 16 32 H 0.41 5.64 7.59 -92.70 -0.70 4.94 16 33 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.08 1.34 6.55 -2.39 -0.02 1.32 16 37 H 0.05 0.94 8.12 -2.38 -0.02 0.92 16 38 H 0.08 1.75 7.93 -2.39 -0.02 1.73 16 39 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 2.14 5.82 -2.39 -0.01 2.12 16 41 H 0.08 2.12 6.47 -2.39 -0.02 2.10 16 42 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 43 H 0.11 3.31 7.93 -2.39 -0.02 3.29 16 44 H 0.40 19.38 7.90 -92.71 -0.73 18.64 16 45 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -74.12 390.88 -1.08 -75.19 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.41 Total: 32.03 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 6.77 Total: 15.03 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -8.11 Total: -117.43 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -0.12 Total: -51.38 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.25 Total: 1.51 kcal Total: -74.12 -1.08 -75.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231301228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.793 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds