Wall clock time and date at job start Tue Mar 31 2020 22:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86798 * 119.99730 * 2 1 4 4 H 1.48500 * 109.47422 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46893 * 119.99832 * 3 2 1 6 6 H 1.48498 * 109.47051 * 239.99746 * 3 2 1 7 7 C 1.40049 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00061 * 172.84379 * 7 2 1 9 9 C 1.41332 * 120.00113 * 352.83557 * 7 2 1 10 10 C 1.40854 * 120.14909 * 186.97250 * 9 7 2 11 11 N 1.31863 * 119.96055 * 179.80135 * 10 9 7 12 12 C 1.32203 * 120.28140 * 0.45329 * 11 10 9 13 13 C 1.39993 * 120.29962 * 359.77995 * 12 11 10 14 14 C 1.48314 * 119.98080 * 179.97438 * 13 12 11 15 15 C 1.39514 * 120.05145 * 180.02562 * 14 13 12 16 16 C 1.38108 * 120.16356 * 180.02562 * 15 14 13 17 17 C 1.38071 * 120.27919 * 359.97438 * 16 15 14 18 18 C 1.39631 * 120.10695 * 0.04251 * 17 16 15 19 19 C 1.47869 * 120.08170 * 179.97438 * 18 17 16 20 20 O 1.21553 * 119.99591 * 147.54074 * 19 18 17 21 21 N 1.34772 * 119.99799 * 327.53992 * 19 18 17 22 22 C 1.47156 * 120.97701 * 174.23962 * 21 19 18 23 23 C 1.53713 * 108.15920 * 129.43271 * 22 21 19 24 24 O 1.42964 * 109.14821 * 52.53427 * 23 22 21 25 25 C 1.42956 * 114.16987 * 297.28858 * 24 23 22 26 26 C 1.47151 * 120.98378 * 354.52175 * 21 19 18 27 27 C 1.39116 * 120.05812 * 359.74855 * 14 13 12 28 28 N 1.32538 * 120.03278 * 359.97438 * 13 12 11 29 29 H 0.96992 * 119.99831 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.02086 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.85468 * 179.75338 * 12 11 10 32 32 H 1.07998 * 119.92032 * 359.97438 * 15 14 13 33 33 H 1.07997 * 119.86000 * 179.97438 * 16 15 14 34 34 H 1.08001 * 119.94590 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.67980 * 249.20508 * 22 21 19 36 36 H 1.08992 * 109.68193 * 9.76544 * 22 21 19 37 37 H 1.08995 * 109.65834 * 292.57201 * 23 22 21 38 38 H 1.09003 * 109.48519 * 172.39794 * 23 22 21 39 39 H 1.08997 * 109.51255 * 302.66178 * 25 24 23 40 40 H 1.09000 * 109.55895 * 182.52649 * 25 24 23 41 41 H 1.08994 * 109.68074 * 350.23740 * 26 21 19 42 42 H 1.09004 * 109.67871 * 110.79305 * 26 21 19 43 43 H 1.07996 * 120.13746 * 359.97105 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0950 1.6964 1.2125 6 1 3.0951 1.6964 -1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0813 -1.2164 -0.1171 9 6 1.3093 -2.4321 0.1516 10 6 2.0187 -3.6401 0.2987 11 7 1.3633 -4.7751 0.4443 12 6 0.0414 -4.7863 0.4439 13 6 -0.6751 -3.5931 0.2936 14 6 -2.1581 -3.6140 0.2936 15 6 -2.8735 -2.4257 0.1434 16 6 -4.2545 -2.4424 0.1436 17 6 -4.9363 -3.6339 0.2918 18 6 -4.2318 -4.8299 0.4434 19 6 -4.9625 -6.1055 0.6026 20 8 -4.4897 -7.1356 0.1635 21 7 -6.1527 -6.1259 1.2346 22 6 -6.9567 -7.3568 1.2958 23 6 -7.3544 -7.5969 2.7610 24 8 -7.9653 -6.4136 3.2811 25 6 -7.1025 -5.2741 3.3108 26 6 -6.6892 -4.9164 1.8786 27 6 -2.8380 -4.8191 0.4377 28 7 -0.0288 -2.4447 0.1512 29 1 -0.4849 0.8400 -0.0004 30 1 3.0986 -3.6363 0.2960 31 1 -0.4884 -5.7204 0.5597 32 1 -2.3462 -1.4904 0.0274 33 1 -4.8035 -1.5197 0.0273 34 1 -6.0163 -3.6408 0.2907 35 1 -7.8514 -7.2416 0.6838 36 1 -6.3678 -8.1984 0.9314 37 1 -6.4673 -7.8364 3.3472 38 1 -8.0610 -8.4252 2.8150 39 1 -6.2143 -5.5052 3.8989 40 1 -7.6272 -4.4307 3.7597 41 1 -5.9232 -4.1415 1.9002 42 1 -7.5574 -4.5599 1.3242 43 1 -2.2881 -5.7419 0.5493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240069172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:57 Heat of formation + Delta-G solvation = 5.823221 kcal Electronic energy + Delta-G solvation = -28386.426112 eV Core-core repulsion = 24397.077760 eV Total energy + Delta-G solvation = -3989.348352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75569 -39.35885 -38.61858 -37.71895 -35.05990 -34.16877 -32.93636 -31.89184 -31.39229 -30.72756 -29.08003 -28.06332 -26.16345 -24.67723 -24.00318 -23.25940 -22.53186 -21.46389 -20.87496 -19.50953 -17.84555 -17.26189 -16.89886 -16.38581 -16.13806 -15.82973 -15.77685 -15.41558 -15.24637 -15.05355 -14.84948 -14.61588 -13.95103 -13.81255 -13.46803 -13.36787 -13.20806 -13.06128 -12.61791 -12.38221 -11.95942 -11.77936 -11.72208 -11.57887 -11.42438 -11.23767 -11.06631 -10.88703 -10.81378 -10.46654 -10.44532 -9.95228 -9.87890 -9.63635 -9.55459 -8.86695 -8.66692 -8.57205 -7.57797 -7.53946 -6.65872 -4.80198 1.06383 1.38761 2.47524 2.63369 2.78968 2.95368 2.97116 3.02624 3.10277 3.48071 3.75927 4.09097 4.32746 4.42161 4.59055 4.65481 4.72398 4.90321 4.93743 4.94086 5.12248 5.17434 5.28100 5.29239 5.39756 5.44170 5.57813 5.61554 5.67144 5.72481 5.89075 5.94954 6.14697 6.19366 6.25693 6.31952 6.56482 6.63603 6.73687 6.83109 6.87057 6.97226 7.12386 7.16946 7.22756 7.52885 7.92339 8.04675 8.28862 8.53459 9.11665 9.66914 10.00894 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.002672 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.262813 B =10477.668694 C =11417.744188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.068 3.932 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.412 4.412 8 H 0.092 0.908 9 C 0.208 3.792 10 C -0.057 4.057 11 N -0.429 5.429 12 C -0.104 4.104 13 C 0.132 3.868 14 C -0.020 4.020 15 C -0.052 4.052 16 C -0.137 4.137 17 C -0.104 4.104 18 C -0.149 4.149 19 C 0.570 3.430 20 O -0.534 6.534 21 N -0.616 5.616 22 C 0.078 3.922 23 C 0.048 3.952 24 O -0.382 6.382 25 C 0.045 3.955 26 C 0.058 3.942 27 C -0.050 4.050 28 N -0.442 5.442 29 H 0.278 0.722 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.157 0.843 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.750 -3.227 4.305 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.158 4.158 3 Si 0.738 3.262 4 H -0.201 1.201 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.443 4.443 8 H 0.110 0.890 9 C 0.081 3.919 10 C -0.227 4.227 11 N -0.140 5.140 12 C -0.262 4.262 13 C -0.015 4.015 14 C -0.022 4.022 15 C -0.071 4.071 16 C -0.155 4.155 17 C -0.123 4.123 18 C -0.152 4.152 19 C 0.360 3.640 20 O -0.410 6.410 21 N -0.351 5.351 22 C -0.045 4.045 23 C -0.030 4.030 24 O -0.300 6.300 25 C -0.032 4.032 26 C -0.065 4.065 27 C -0.070 4.070 28 N -0.159 5.159 29 H 0.089 0.911 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.174 0.826 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.869 -3.643 4.125 16.797 hybrid contribution 0.578 0.759 -0.122 0.962 sum -15.291 -2.885 4.003 16.068 Atomic orbital electron populations 1.70016 1.07463 1.28530 1.27463 1.26112 0.95002 1.01446 0.93275 0.86255 0.80082 0.79697 0.80151 1.20053 1.18708 1.18717 1.19602 0.95168 0.89160 1.40402 0.89038 1.19357 0.88657 0.93473 0.90412 1.23270 0.99419 0.89435 1.10579 1.67698 1.08791 1.29881 1.07634 1.22555 0.90710 0.97161 1.15806 1.20550 0.92205 0.91926 0.96787 1.18679 0.91879 0.92554 0.99083 1.21945 0.93247 0.99915 0.91965 1.21090 0.94577 0.97544 1.02270 1.21463 0.99579 0.91860 0.99406 1.19509 0.94007 0.92492 1.09189 1.18488 0.79686 0.88890 0.76919 1.90767 1.66735 1.34368 1.49180 1.47971 1.19874 1.11491 1.55794 1.22366 0.95879 0.88602 0.97643 1.23067 0.98889 0.88087 0.92910 1.87948 1.38994 1.18916 1.84140 1.23050 0.95097 0.89470 0.95600 1.23030 1.00808 0.88642 0.94038 1.21283 0.92010 0.98275 0.95390 1.69480 1.08217 1.22923 1.15287 0.91130 0.84707 0.85334 0.82586 0.85538 0.85422 0.90626 0.87913 0.92429 0.87640 0.92355 0.87435 0.86661 0.90313 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -16.97 11.52 55.55 0.64 -16.33 16 2 C 0.07 1.58 5.49 -17.34 -0.10 1.48 16 3 Si 0.91 17.03 29.57 -169.99 -5.03 12.01 16 4 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.41 -10.14 9.15 -37.73 -0.35 -10.49 16 8 H 0.09 2.07 7.86 -52.49 -0.41 1.66 16 9 C 0.21 5.42 6.54 -84.84 -0.55 4.86 16 10 C -0.06 -1.40 10.98 -16.55 -0.18 -1.58 16 11 N -0.43 -10.64 10.47 -12.06 -0.13 -10.77 16 12 C -0.10 -2.46 10.61 -16.73 -0.18 -2.64 16 13 C 0.13 3.13 6.74 -82.76 -0.56 2.57 16 14 C -0.02 -0.41 5.87 -104.95 -0.62 -1.02 16 15 C -0.05 -0.94 9.58 -39.15 -0.37 -1.31 16 16 C -0.14 -1.91 10.02 -39.69 -0.40 -2.30 16 17 C -0.10 -1.34 7.39 -39.12 -0.29 -1.63 16 18 C -0.15 -2.29 5.37 -105.01 -0.56 -2.85 16 19 C 0.57 8.64 7.43 -12.32 -0.09 8.55 16 20 O -0.53 -9.79 16.23 5.32 0.09 -9.71 16 21 N -0.62 -7.16 3.01 -173.12 -0.52 -7.69 16 22 C 0.08 0.76 6.68 -3.31 -0.02 0.74 16 23 C 0.05 0.40 7.00 37.53 0.26 0.67 16 24 O -0.38 -3.68 10.74 -35.23 -0.38 -4.06 16 25 C 0.05 0.37 6.99 37.31 0.26 0.63 16 26 C 0.06 0.51 4.89 -3.53 -0.02 0.49 16 27 C -0.05 -0.89 8.98 -38.83 -0.35 -1.24 16 28 N -0.44 -11.40 7.16 -7.50 -0.05 -11.45 16 29 H 0.28 5.93 8.29 -40.82 -0.34 5.59 16 30 H 0.14 2.99 8.06 -52.49 -0.42 2.56 16 31 H 0.13 2.74 6.18 -52.49 -0.32 2.41 16 32 H 0.16 3.15 7.54 -52.49 -0.40 2.75 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.25 5.67 -52.49 -0.30 0.95 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 1.10 7.06 -51.93 -0.37 0.73 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.12 1.04 4.54 -51.93 -0.24 0.81 16 42 H 0.08 0.58 7.94 -51.93 -0.41 0.17 16 43 H 0.13 2.44 6.08 -52.49 -0.32 2.12 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -30.70 357.70 -8.96 -39.66 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.86 Total: 8.04 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -4.11 Total: -5.08 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.06 Total: -46.24 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.29 Total: -13.77 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.70 -8.96 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240069172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.478 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds