Wall clock time and date at job start Tue Mar 31 2020 22:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86798 * 119.99730 * 2 1 4 4 H 1.48500 * 109.47422 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46893 * 119.99832 * 3 2 1 6 6 H 1.48498 * 109.47051 * 239.99746 * 3 2 1 7 7 C 1.40049 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00061 * 172.84379 * 7 2 1 9 9 C 1.41332 * 120.00113 * 352.83557 * 7 2 1 10 10 C 1.40854 * 120.14909 * 186.97250 * 9 7 2 11 11 N 1.31863 * 119.96055 * 179.80135 * 10 9 7 12 12 C 1.32203 * 120.28140 * 0.45329 * 11 10 9 13 13 C 1.39993 * 120.29962 * 359.77995 * 12 11 10 14 14 C 1.48314 * 119.98080 * 179.97438 * 13 12 11 15 15 C 1.39514 * 120.05145 * 180.02562 * 14 13 12 16 16 C 1.38108 * 120.16356 * 180.02562 * 15 14 13 17 17 C 1.38071 * 120.27919 * 359.97438 * 16 15 14 18 18 C 1.39631 * 120.10695 * 0.04251 * 17 16 15 19 19 C 1.47869 * 120.08170 * 179.97438 * 18 17 16 20 20 O 1.21553 * 119.99591 * 147.54074 * 19 18 17 21 21 N 1.34772 * 119.99799 * 327.53992 * 19 18 17 22 22 C 1.47156 * 120.97701 * 174.23962 * 21 19 18 23 23 C 1.53713 * 108.15920 * 129.43271 * 22 21 19 24 24 O 1.42964 * 109.14821 * 52.53427 * 23 22 21 25 25 C 1.42956 * 114.16987 * 297.28858 * 24 23 22 26 26 C 1.47151 * 120.98378 * 354.52175 * 21 19 18 27 27 C 1.39116 * 120.05812 * 359.74855 * 14 13 12 28 28 N 1.32538 * 120.03278 * 359.97438 * 13 12 11 29 29 H 0.96992 * 119.99831 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.02086 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.85468 * 179.75338 * 12 11 10 32 32 H 1.07998 * 119.92032 * 359.97438 * 15 14 13 33 33 H 1.07997 * 119.86000 * 179.97438 * 16 15 14 34 34 H 1.08001 * 119.94590 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.67980 * 249.20508 * 22 21 19 36 36 H 1.08992 * 109.68193 * 9.76544 * 22 21 19 37 37 H 1.08995 * 109.65834 * 292.57201 * 23 22 21 38 38 H 1.09003 * 109.48519 * 172.39794 * 23 22 21 39 39 H 1.08997 * 109.51255 * 302.66178 * 25 24 23 40 40 H 1.09000 * 109.55895 * 182.52649 * 25 24 23 41 41 H 1.08994 * 109.68074 * 350.23740 * 26 21 19 42 42 H 1.09004 * 109.67871 * 110.79305 * 26 21 19 43 43 H 1.07996 * 120.13746 * 359.97105 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0950 1.6964 1.2125 6 1 3.0951 1.6964 -1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0813 -1.2164 -0.1171 9 6 1.3093 -2.4321 0.1516 10 6 2.0187 -3.6401 0.2987 11 7 1.3633 -4.7751 0.4443 12 6 0.0414 -4.7863 0.4439 13 6 -0.6751 -3.5931 0.2936 14 6 -2.1581 -3.6140 0.2936 15 6 -2.8735 -2.4257 0.1434 16 6 -4.2545 -2.4424 0.1436 17 6 -4.9363 -3.6339 0.2918 18 6 -4.2318 -4.8299 0.4434 19 6 -4.9625 -6.1055 0.6026 20 8 -4.4897 -7.1356 0.1635 21 7 -6.1527 -6.1259 1.2346 22 6 -6.9567 -7.3568 1.2958 23 6 -7.3544 -7.5969 2.7610 24 8 -7.9653 -6.4136 3.2811 25 6 -7.1025 -5.2741 3.3108 26 6 -6.6892 -4.9164 1.8786 27 6 -2.8380 -4.8191 0.4377 28 7 -0.0288 -2.4447 0.1512 29 1 -0.4849 0.8400 -0.0004 30 1 3.0986 -3.6363 0.2960 31 1 -0.4884 -5.7204 0.5597 32 1 -2.3462 -1.4904 0.0274 33 1 -4.8035 -1.5197 0.0273 34 1 -6.0163 -3.6408 0.2907 35 1 -7.8514 -7.2416 0.6838 36 1 -6.3678 -8.1984 0.9314 37 1 -6.4673 -7.8364 3.3472 38 1 -8.0610 -8.4252 2.8150 39 1 -6.2143 -5.5052 3.8989 40 1 -7.6272 -4.4307 3.7597 41 1 -5.9232 -4.1415 1.9002 42 1 -7.5574 -4.5599 1.3242 43 1 -2.2881 -5.7419 0.5493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240069172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:57 Heat of formation + Delta-G solvation = -13.783592 kcal Electronic energy + Delta-G solvation = -28387.276327 eV Core-core repulsion = 24397.077760 eV Total energy + Delta-G solvation = -3990.198567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82553 -40.98028 -39.73063 -38.95294 -36.06789 -35.94150 -34.49892 -33.21725 -32.70039 -31.90727 -30.64435 -28.94786 -27.96519 -25.59257 -25.36768 -24.52887 -24.07979 -22.68877 -22.25831 -20.56985 -19.53561 -18.55924 -18.00532 -17.56946 -17.43991 -16.98605 -16.90662 -16.80859 -16.67948 -16.03122 -15.95787 -15.85209 -15.15920 -15.12667 -15.07289 -14.63073 -14.53385 -14.35596 -13.73536 -13.45926 -13.36990 -13.25908 -13.00623 -12.86566 -12.66290 -12.49605 -12.34870 -12.27238 -11.99053 -11.78065 -11.72218 -11.53388 -11.28157 -11.25400 -10.94468 -10.26815 -10.02587 -9.64855 -9.42262 -9.18581 -8.43598 -6.68984 -0.30232 0.01848 0.82561 1.11708 1.42850 1.53936 1.55827 1.62325 1.78434 2.19379 2.64163 2.84588 2.91510 3.27531 3.50640 3.71026 3.78449 3.82776 3.91438 4.00876 4.07464 4.16628 4.17826 4.23810 4.25040 4.35973 4.47381 4.49520 4.59125 4.64155 4.73000 4.77430 4.83520 4.88177 4.90729 5.01649 5.10922 5.14693 5.21445 5.35909 5.42525 5.64225 5.72199 5.89804 6.07671 6.09073 6.14346 6.43994 6.67615 6.93160 7.23143 7.79944 8.28411 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.002672 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.262813 B =10477.668694 C =11417.744188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.024 3.976 3 Si 0.995 3.005 4 H -0.265 1.265 5 H -0.260 1.260 6 H -0.258 1.258 7 C -0.431 4.431 8 H 0.103 0.897 9 C 0.175 3.825 10 C -0.081 4.081 11 N -0.440 5.440 12 C -0.127 4.127 13 C 0.129 3.871 14 C -0.052 4.052 15 C -0.064 4.064 16 C -0.120 4.120 17 C -0.074 4.074 18 C -0.150 4.150 19 C 0.566 3.434 20 O -0.577 6.577 21 N -0.609 5.609 22 C 0.074 3.926 23 C 0.052 3.948 24 O -0.390 6.390 25 C 0.044 3.956 26 C 0.052 3.948 27 C -0.057 4.057 28 N -0.464 5.464 29 H 0.288 0.712 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.131 0.869 39 H 0.047 0.953 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.965 -1.283 4.678 19.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.200 4.200 3 Si 0.814 3.186 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.182 1.182 7 C -0.463 4.463 8 H 0.121 0.879 9 C 0.049 3.951 10 C -0.251 4.251 11 N -0.151 5.151 12 C -0.285 4.285 13 C -0.018 4.018 14 C -0.054 4.054 15 C -0.083 4.083 16 C -0.137 4.137 17 C -0.092 4.092 18 C -0.153 4.153 19 C 0.356 3.644 20 O -0.457 6.457 21 N -0.342 5.342 22 C -0.048 4.048 23 C -0.026 4.026 24 O -0.309 6.309 25 C -0.033 4.033 26 C -0.070 4.070 27 C -0.077 4.077 28 N -0.182 5.182 29 H 0.099 0.901 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.185 0.815 34 H 0.191 0.809 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.149 0.851 39 H 0.066 0.934 40 H 0.153 0.847 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.116 -1.706 4.522 19.718 hybrid contribution 1.374 0.129 -0.202 1.395 sum -17.742 -1.576 4.320 18.328 Atomic orbital electron populations 1.70089 1.08929 1.30178 1.26491 1.27061 0.95899 1.04629 0.92440 0.85059 0.78624 0.74776 0.80135 1.18873 1.18419 1.18205 1.20051 0.96015 0.89746 1.40447 0.87870 1.19848 0.89417 0.94559 0.91299 1.23489 1.00216 0.89338 1.12051 1.67665 1.09479 1.30129 1.07826 1.22849 0.90657 0.98129 1.16845 1.21125 0.94398 0.91325 0.95001 1.18586 0.90017 0.94226 1.02559 1.21852 0.95208 0.98078 0.93187 1.21431 0.92633 0.99629 1.00022 1.21901 1.01537 0.90064 0.95708 1.19648 0.92995 0.93975 1.08695 1.18463 0.80623 0.88072 0.77210 1.90750 1.68062 1.35525 1.51401 1.48076 1.18675 1.13230 1.54212 1.22545 0.95858 0.87401 0.98985 1.23122 0.99240 0.88654 0.91563 1.87947 1.39441 1.19362 1.84113 1.23181 0.95067 0.90014 0.95085 1.23295 1.01566 0.87391 0.94701 1.21150 0.93392 0.96931 0.96246 1.69513 1.08237 1.23833 1.16647 0.90098 0.83141 0.83952 0.85018 0.81461 0.80908 0.88634 0.89384 0.93428 0.85137 0.93429 0.84670 0.86698 0.87387 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -35.48 11.52 21.84 0.25 -35.22 16 2 C 0.02 1.12 5.49 85.30 0.47 1.59 16 3 Si 0.99 34.41 29.57 68.60 2.03 36.44 16 4 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 5 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 6 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 7 C -0.43 -21.86 9.15 23.47 0.21 -21.65 16 8 H 0.10 4.77 7.86 -2.91 -0.02 4.74 16 9 C 0.17 9.56 6.54 40.24 0.26 9.83 16 10 C -0.08 -4.24 10.98 85.33 0.94 -3.30 16 11 N -0.44 -23.06 10.47 -192.06 -2.01 -25.07 16 12 C -0.13 -6.38 10.61 85.06 0.90 -5.48 16 13 C 0.13 6.46 6.74 42.15 0.28 6.75 16 14 C -0.05 -2.17 5.87 -20.08 -0.12 -2.29 16 15 C -0.06 -2.32 9.58 22.55 0.22 -2.11 16 16 C -0.12 -2.97 10.02 22.20 0.22 -2.74 16 17 C -0.07 -1.63 7.39 22.57 0.17 -1.46 16 18 C -0.15 -4.44 5.37 -20.11 -0.11 -4.55 16 19 C 0.57 16.63 7.43 86.79 0.65 17.28 16 20 O -0.58 -21.55 16.23 -3.88 -0.06 -21.61 16 21 N -0.61 -12.68 3.01 -819.91 -2.47 -15.15 16 22 C 0.07 1.29 6.68 86.49 0.58 1.86 16 23 C 0.05 0.75 7.00 72.22 0.51 1.25 16 24 O -0.39 -6.25 10.74 -148.98 -1.60 -7.85 16 25 C 0.04 0.57 6.99 72.08 0.50 1.07 16 26 C 0.05 0.71 4.89 86.36 0.42 1.13 16 27 C -0.06 -2.11 8.98 22.76 0.20 -1.91 16 28 N -0.46 -25.21 7.16 -177.65 -1.27 -26.48 16 29 H 0.29 12.26 8.29 -92.71 -0.77 11.49 16 30 H 0.15 7.02 8.06 -2.91 -0.02 7.00 16 31 H 0.14 6.53 6.18 -2.91 -0.02 6.51 16 32 H 0.13 5.45 7.54 -2.91 -0.02 5.43 16 33 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.17 2.33 5.67 -2.91 -0.02 2.31 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.83 7.06 -2.39 -0.02 1.81 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.12 1.58 4.54 -2.39 -0.01 1.56 16 42 H 0.11 0.95 7.94 -2.39 -0.02 0.93 16 43 H 0.12 4.64 6.08 -2.91 -0.02 4.62 16 Total: -1.00 -71.67 357.70 2.23 -69.44 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 1.06 Total: 30.24 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.31 Total: -4.73 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -5.50 Total: -101.92 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -1.66 Total: -29.46 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Total: -71.67 2.23 -69.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240069172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.652 kcal (2) G-P(sol) polarization free energy of solvation -71.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds