Wall clock time and date at job start Tue Mar 31 2020 22:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30660 * 1 3 3 Si 1.86798 * 120.00070 * 2 1 4 4 H 1.48498 * 109.46856 * 95.01688 * 3 2 1 5 5 H 1.48500 * 109.47240 * 215.01856 * 3 2 1 6 6 H 1.48502 * 109.46921 * 335.02006 * 3 2 1 7 7 C 1.40149 * 119.99758 * 180.27972 * 2 1 3 8 8 H 1.08000 * 119.99711 * 172.65338 * 7 2 1 9 9 C 1.41093 * 120.00124 * 352.65032 * 7 2 1 10 10 N 1.33648 * 119.13539 * 6.87379 * 9 7 2 11 11 C 1.31588 * 120.83099 * 179.71331 * 10 9 7 12 12 C 1.40429 * 119.09167 * 0.54884 * 11 10 9 13 13 C 1.47953 * 120.78875 * 179.75253 * 12 11 10 14 14 C 1.39755 * 120.07894 * 179.70303 * 13 12 11 15 15 C 1.38021 * 120.14364 * 179.78388 * 14 13 12 16 16 C 1.38143 * 120.30332 * 0.47056 * 15 14 13 17 17 C 1.39688 * 120.15234 * 359.78047 * 16 15 14 18 18 C 1.47868 * 120.06735 * 180.02562 * 17 16 15 19 19 O 1.21559 * 119.99689 * 212.55704 * 18 17 16 20 20 N 1.34774 * 120.00386 * 32.56395 * 18 17 16 21 21 C 1.47149 * 120.98174 * 5.17477 * 20 18 17 22 22 C 1.53709 * 108.16500 * 129.43661 * 21 20 18 23 23 O 1.42957 * 109.14919 * 52.53384 * 22 21 20 24 24 C 1.42959 * 114.16732 * 297.29321 * 23 22 21 25 25 C 1.47154 * 120.98350 * 185.45991 * 20 18 17 26 26 C 1.39307 * 119.85576 * 359.97438 * 17 16 15 27 27 C 1.40414 * 118.41800 * 359.72326 * 12 11 10 28 28 N 1.31589 * 119.09708 * 0.02562 * 27 12 11 29 29 H 0.96998 * 120.00284 * 359.71994 * 1 2 3 30 30 H 1.07999 * 120.45773 * 180.27526 * 11 10 9 31 31 H 1.08001 * 119.92660 * 359.97438 * 14 13 12 32 32 H 1.08001 * 119.84356 * 180.22696 * 15 14 13 33 33 H 1.08003 * 119.91912 * 179.76586 * 16 15 14 34 34 H 1.08999 * 109.67907 * 249.21418 * 21 20 18 35 35 H 1.08998 * 109.68077 * 9.76226 * 21 20 18 36 36 H 1.08999 * 109.65256 * 292.57077 * 22 21 20 37 37 H 1.09000 * 109.48758 * 172.39911 * 22 21 20 38 38 H 1.09002 * 109.51712 * 302.65240 * 24 23 22 39 39 H 1.09001 * 109.55405 * 182.52709 * 24 23 22 40 40 H 1.09006 * 109.68012 * 350.22706 * 25 20 18 41 41 H 1.08993 * 109.68535 * 110.78687 * 25 20 18 42 42 H 1.08001 * 120.14695 * 179.97438 * 26 17 16 43 43 H 1.08004 * 120.45032 * 180.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.5941 1.9851 1.3947 5 1 3.4811 1.4731 -0.8034 6 1 1.3890 2.6809 -0.5913 7 6 2.0073 -1.2137 -0.0059 8 1 3.0806 -1.2170 -0.1255 9 6 1.3105 -2.4314 0.1444 10 7 -0.0259 -2.4196 0.1522 11 6 -0.7094 -3.5363 0.2847 12 6 -0.0154 -4.7483 0.4306 13 6 -0.7461 -6.0252 0.5877 14 6 -0.0404 -7.2237 0.7256 15 6 -0.7207 -8.4150 0.8768 16 6 -2.1020 -8.4331 0.8831 17 6 -2.8199 -7.2433 0.7409 18 6 -4.2984 -7.2647 0.7485 19 8 -4.9213 -6.4611 0.0823 20 7 -4.9554 -8.1750 1.4942 21 6 -4.2283 -9.0834 2.3950 22 6 -4.8890 -9.0139 3.7811 23 8 -6.2928 -9.2464 3.6437 24 6 -6.9739 -8.2667 2.8563 25 6 -6.4206 -8.2942 1.4269 26 6 -2.1399 -6.0365 0.5931 27 6 1.3884 -4.7197 0.4232 28 7 2.0042 -3.5654 0.2812 29 1 -0.4850 0.8400 0.0041 30 1 -1.7892 -3.5203 0.2856 31 1 1.0395 -7.2171 0.7170 32 1 -0.1705 -9.3379 0.9867 33 1 -2.6280 -9.3694 0.9980 34 1 -4.2815 -10.1019 2.0106 35 1 -3.1863 -8.7719 2.4677 36 1 -4.7241 -8.0285 4.2168 37 1 -4.4555 -9.7756 4.4292 38 1 -6.8168 -7.2785 3.2886 39 1 -8.0406 -8.4906 2.8380 40 1 -6.8310 -7.4598 0.8582 41 1 -6.6907 -9.2346 0.9467 42 1 -2.6902 -5.1138 0.4824 43 1 1.9552 -5.6325 0.5326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240069836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:02 Heat of formation + Delta-G solvation = 8.934184 kcal Electronic energy + Delta-G solvation = -28031.998615 eV Core-core repulsion = 24042.785164 eV Total energy + Delta-G solvation = -3989.213451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73338 -39.34790 -38.61548 -37.72238 -35.05830 -34.13936 -32.58266 -32.11301 -31.56818 -30.77346 -29.12257 -28.08297 -26.27112 -24.65065 -24.10391 -22.98847 -22.67998 -21.44164 -20.88959 -19.52451 -18.13057 -17.39177 -16.91788 -16.44850 -16.17724 -16.06806 -15.81164 -15.43279 -15.14080 -14.92280 -14.74066 -14.55052 -13.92196 -13.66935 -13.43263 -13.34451 -13.19628 -12.83115 -12.68586 -12.42293 -12.35481 -11.98810 -11.77734 -11.54728 -11.42434 -11.32962 -11.06730 -10.95731 -10.83498 -10.46123 -10.44057 -9.92612 -9.76345 -9.36994 -9.30743 -9.06085 -8.87107 -8.66897 -7.50379 -7.49170 -6.78030 -4.90255 1.06531 1.44450 2.47288 2.65040 2.83465 2.90061 2.93523 2.97845 3.07159 3.48370 3.71155 4.08914 4.35098 4.42241 4.51819 4.67163 4.72804 4.91307 4.94654 5.04795 5.11570 5.20605 5.28032 5.34437 5.39921 5.46416 5.55044 5.58714 5.65484 5.70035 5.74171 5.85267 6.00060 6.13470 6.17730 6.28918 6.50907 6.56617 6.63354 6.73917 6.77378 6.91861 7.13817 7.18579 7.28346 7.46709 7.92838 8.06375 8.25639 8.33359 8.90100 9.87167 10.06104 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002387 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.438849 B =11728.493194 C =12631.313935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.058 3.942 3 Si 0.924 3.076 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.273 1.273 7 C -0.370 4.370 8 H 0.098 0.902 9 C 0.377 3.623 10 N -0.508 5.508 11 C 0.185 3.815 12 C -0.337 4.337 13 C 0.038 3.962 14 C -0.125 4.125 15 C -0.112 4.112 16 C -0.143 4.143 17 C -0.123 4.123 18 C 0.566 3.434 19 O -0.533 6.533 20 N -0.616 5.616 21 C 0.058 3.942 22 C 0.045 3.955 23 O -0.382 6.382 24 C 0.048 3.952 25 C 0.077 3.923 26 C -0.088 4.088 27 C 0.191 3.809 28 N -0.592 5.592 29 H 0.281 0.719 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.129 0.871 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 -15.489 5.866 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.171 4.171 3 Si 0.747 3.253 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.198 1.198 7 C -0.403 4.403 8 H 0.116 0.884 9 C 0.146 3.854 10 N -0.224 5.224 11 C 0.007 3.993 12 C -0.347 4.347 13 C 0.036 3.964 14 C -0.144 4.144 15 C -0.130 4.130 16 C -0.161 4.161 17 C -0.126 4.126 18 C 0.357 3.643 19 O -0.409 6.409 20 N -0.351 5.351 21 C -0.065 4.065 22 C -0.032 4.032 23 O -0.300 6.300 24 C -0.029 4.029 25 C -0.045 4.045 26 C -0.107 4.107 27 C 0.016 3.984 28 N -0.310 5.310 29 H 0.093 0.907 30 H 0.150 0.850 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.135 0.865 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.147 0.853 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.600 -13.959 5.439 17.274 hybrid contribution -0.130 -0.139 -0.010 0.191 sum -8.731 -14.098 5.430 17.449 Atomic orbital electron populations 1.70111 1.07545 1.29031 1.24440 1.26273 0.95157 1.01915 0.93775 0.86050 0.80250 0.79159 0.79842 1.18888 1.18089 1.19751 1.19551 0.95691 0.88009 1.37006 0.88378 1.19969 0.85909 0.90882 0.88666 1.69359 1.08338 1.26415 1.18248 1.23098 0.99157 0.87962 0.89053 1.19678 0.95298 0.93367 1.26321 1.18665 0.91755 0.92690 0.93281 1.21351 1.00048 0.91780 1.01184 1.20881 0.93704 0.97828 1.00549 1.21261 0.94456 0.96763 1.03651 1.19556 0.91433 0.95049 1.06542 1.18597 0.87792 0.79389 0.78545 1.90775 1.69001 1.38539 1.42619 1.47977 1.06989 1.36617 1.43514 1.23127 0.98908 0.94351 0.90122 1.23130 0.81599 1.02458 0.96059 1.87944 1.20325 1.50118 1.71638 1.22989 0.97239 0.92694 0.90025 1.22278 0.80223 1.03837 0.98200 1.21217 0.93611 0.96848 0.99053 1.22672 0.90435 0.95707 0.89632 1.68658 1.40734 0.98836 1.22773 0.90717 0.85033 0.85849 0.86053 0.85745 0.90410 0.86482 0.92348 0.87526 0.92456 0.87616 0.87921 0.90692 0.85328 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.43 11.44 55.56 0.64 -16.79 16 2 C 0.06 1.40 5.49 -17.33 -0.10 1.30 16 3 Si 0.92 17.51 29.57 -169.99 -5.03 12.49 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.37 -9.66 9.35 -37.78 -0.35 -10.02 16 8 H 0.10 2.43 7.86 -52.49 -0.41 2.02 16 9 C 0.38 10.28 7.35 -158.17 -1.16 9.12 16 10 N -0.51 -13.69 7.87 -12.41 -0.10 -13.79 16 11 C 0.19 4.37 10.70 -16.83 -0.18 4.19 16 12 C -0.34 -7.19 5.94 -104.27 -0.62 -7.81 16 13 C 0.04 0.68 5.88 -104.92 -0.62 0.06 16 14 C -0.12 -1.84 9.45 -39.09 -0.37 -2.21 16 15 C -0.11 -1.35 10.02 -39.70 -0.40 -1.75 16 16 C -0.14 -1.74 7.39 -39.07 -0.29 -2.02 16 17 C -0.12 -1.85 5.38 -105.02 -0.56 -2.42 16 18 C 0.57 8.64 7.43 -12.32 -0.09 8.55 16 19 O -0.53 -9.95 16.23 5.31 0.09 -9.86 16 20 N -0.62 -7.19 3.01 -173.12 -0.52 -7.71 16 21 C 0.06 0.50 4.92 -3.32 -0.02 0.49 16 22 C 0.05 0.37 7.00 37.53 0.26 0.63 16 23 O -0.38 -3.69 10.74 -35.23 -0.38 -4.07 16 24 C 0.05 0.41 6.98 37.31 0.26 0.67 16 25 C 0.08 0.77 6.65 -3.53 -0.02 0.74 16 26 C -0.09 -1.53 9.00 -38.76 -0.35 -1.88 16 27 C 0.19 4.18 10.70 -16.84 -0.18 4.00 16 28 N -0.59 -15.06 10.34 -12.41 -0.13 -15.19 16 29 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 30 H 0.13 2.83 6.33 -52.49 -0.33 2.50 16 31 H 0.12 1.65 6.27 -52.49 -0.33 1.32 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.18 5.66 -52.48 -0.30 0.88 16 34 H 0.08 0.57 7.94 -51.93 -0.41 0.16 16 35 H 0.12 1.03 4.52 -51.93 -0.23 0.80 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.13 7.06 -51.93 -0.37 0.76 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.13 2.36 6.19 -52.49 -0.32 2.04 16 43 H 0.13 2.37 6.32 -52.48 -0.33 2.04 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -31.87 355.34 -9.57 -41.44 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.71 Total: 6.48 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -4.78 Total: 1.66 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.11 Total: -53.49 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.29 Total: -13.93 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.87 -9.57 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240069836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.372 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds