Wall clock time and date at job start Tue Mar 31 2020 22:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30660 * 1 3 3 Si 1.86798 * 120.00070 * 2 1 4 4 H 1.48498 * 109.46856 * 95.01688 * 3 2 1 5 5 H 1.48500 * 109.47240 * 215.01856 * 3 2 1 6 6 H 1.48502 * 109.46921 * 335.02006 * 3 2 1 7 7 C 1.40149 * 119.99758 * 180.27972 * 2 1 3 8 8 H 1.08000 * 119.99711 * 172.65338 * 7 2 1 9 9 C 1.41093 * 120.00124 * 352.65032 * 7 2 1 10 10 N 1.33648 * 119.13539 * 6.87379 * 9 7 2 11 11 C 1.31588 * 120.83099 * 179.71331 * 10 9 7 12 12 C 1.40429 * 119.09167 * 0.54884 * 11 10 9 13 13 C 1.47953 * 120.78875 * 179.75253 * 12 11 10 14 14 C 1.39755 * 120.07894 * 179.70303 * 13 12 11 15 15 C 1.38021 * 120.14364 * 179.78388 * 14 13 12 16 16 C 1.38143 * 120.30332 * 0.47056 * 15 14 13 17 17 C 1.39688 * 120.15234 * 359.78047 * 16 15 14 18 18 C 1.47868 * 120.06735 * 180.02562 * 17 16 15 19 19 O 1.21559 * 119.99689 * 212.55704 * 18 17 16 20 20 N 1.34774 * 120.00386 * 32.56395 * 18 17 16 21 21 C 1.47149 * 120.98174 * 5.17477 * 20 18 17 22 22 C 1.53709 * 108.16500 * 129.43661 * 21 20 18 23 23 O 1.42957 * 109.14919 * 52.53384 * 22 21 20 24 24 C 1.42959 * 114.16732 * 297.29321 * 23 22 21 25 25 C 1.47154 * 120.98350 * 185.45991 * 20 18 17 26 26 C 1.39307 * 119.85576 * 359.97438 * 17 16 15 27 27 C 1.40414 * 118.41800 * 359.72326 * 12 11 10 28 28 N 1.31589 * 119.09708 * 0.02562 * 27 12 11 29 29 H 0.96998 * 120.00284 * 359.71994 * 1 2 3 30 30 H 1.07999 * 120.45773 * 180.27526 * 11 10 9 31 31 H 1.08001 * 119.92660 * 359.97438 * 14 13 12 32 32 H 1.08001 * 119.84356 * 180.22696 * 15 14 13 33 33 H 1.08003 * 119.91912 * 179.76586 * 16 15 14 34 34 H 1.08999 * 109.67907 * 249.21418 * 21 20 18 35 35 H 1.08998 * 109.68077 * 9.76226 * 21 20 18 36 36 H 1.08999 * 109.65256 * 292.57077 * 22 21 20 37 37 H 1.09000 * 109.48758 * 172.39911 * 22 21 20 38 38 H 1.09002 * 109.51712 * 302.65240 * 24 23 22 39 39 H 1.09001 * 109.55405 * 182.52709 * 24 23 22 40 40 H 1.09006 * 109.68012 * 350.22706 * 25 20 18 41 41 H 1.08993 * 109.68535 * 110.78687 * 25 20 18 42 42 H 1.08001 * 120.14695 * 179.97438 * 26 17 16 43 43 H 1.08004 * 120.45032 * 180.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.5941 1.9851 1.3947 5 1 3.4811 1.4731 -0.8034 6 1 1.3890 2.6809 -0.5913 7 6 2.0073 -1.2137 -0.0059 8 1 3.0806 -1.2170 -0.1255 9 6 1.3105 -2.4314 0.1444 10 7 -0.0259 -2.4196 0.1522 11 6 -0.7094 -3.5363 0.2847 12 6 -0.0154 -4.7483 0.4306 13 6 -0.7461 -6.0252 0.5877 14 6 -0.0404 -7.2237 0.7256 15 6 -0.7207 -8.4150 0.8768 16 6 -2.1020 -8.4331 0.8831 17 6 -2.8199 -7.2433 0.7409 18 6 -4.2984 -7.2647 0.7485 19 8 -4.9213 -6.4611 0.0823 20 7 -4.9554 -8.1750 1.4942 21 6 -4.2283 -9.0834 2.3950 22 6 -4.8890 -9.0139 3.7811 23 8 -6.2928 -9.2464 3.6437 24 6 -6.9739 -8.2667 2.8563 25 6 -6.4206 -8.2942 1.4269 26 6 -2.1399 -6.0365 0.5931 27 6 1.3884 -4.7197 0.4232 28 7 2.0042 -3.5654 0.2812 29 1 -0.4850 0.8400 0.0041 30 1 -1.7892 -3.5203 0.2856 31 1 1.0395 -7.2171 0.7170 32 1 -0.1705 -9.3379 0.9867 33 1 -2.6280 -9.3694 0.9980 34 1 -4.2815 -10.1019 2.0106 35 1 -3.1863 -8.7719 2.4677 36 1 -4.7241 -8.0285 4.2168 37 1 -4.4555 -9.7756 4.4292 38 1 -6.8168 -7.2785 3.2886 39 1 -8.0406 -8.4906 2.8380 40 1 -6.8310 -7.4598 0.8582 41 1 -6.6907 -9.2346 0.9467 42 1 -2.6902 -5.1138 0.4824 43 1 1.9552 -5.6325 0.5326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240069836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:01 Heat of formation + Delta-G solvation = -11.751111 kcal Electronic energy + Delta-G solvation = -28032.895597 eV Core-core repulsion = 24042.785164 eV Total energy + Delta-G solvation = -3990.110432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78529 -40.97389 -39.70604 -38.93610 -36.11100 -35.80527 -34.03838 -33.79958 -32.61720 -31.89313 -30.69229 -28.97830 -27.93828 -25.72389 -25.19401 -24.46533 -24.11627 -22.56599 -22.26624 -20.57553 -19.90592 -18.51629 -18.13825 -17.75192 -17.49467 -17.04343 -16.85835 -16.69598 -16.27002 -15.97792 -15.90111 -15.84090 -15.10321 -15.08822 -14.86389 -14.63626 -14.46016 -14.37063 -13.98312 -13.72287 -13.38318 -13.19506 -13.01635 -12.85172 -12.74131 -12.56243 -12.30946 -12.28451 -11.97849 -11.76467 -11.45608 -11.29521 -11.26628 -11.14800 -10.93688 -10.58724 -9.97342 -9.64461 -9.36222 -9.07085 -8.55805 -6.78213 -0.19578 0.11084 0.93622 1.04018 1.37060 1.49052 1.53933 1.64601 1.81336 2.14524 2.60716 2.83350 2.97522 3.35615 3.69836 3.81859 3.83317 3.86827 3.88564 3.97789 4.04857 4.07203 4.18321 4.22976 4.27792 4.29898 4.40709 4.49184 4.51148 4.62615 4.71242 4.74422 4.83359 4.88647 4.94216 5.05216 5.10172 5.20677 5.27983 5.38872 5.45222 5.69987 5.78328 5.99447 6.05229 6.06101 6.16149 6.40790 6.48848 6.94481 7.06602 8.09649 8.24083 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002387 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.438849 B =11728.493194 C =12631.313935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.018 3.982 3 Si 1.005 2.995 4 H -0.258 1.258 5 H -0.251 1.251 6 H -0.262 1.262 7 C -0.414 4.414 8 H 0.098 0.902 9 C 0.351 3.649 10 N -0.543 5.543 11 C 0.158 3.842 12 C -0.317 4.317 13 C 0.004 3.996 14 C -0.113 4.113 15 C -0.099 4.099 16 C -0.110 4.110 17 C -0.135 4.135 18 C 0.559 3.441 19 O -0.582 6.582 20 N -0.609 5.609 21 C 0.053 3.947 22 C 0.043 3.957 23 O -0.390 6.390 24 C 0.052 3.948 25 C 0.073 3.927 26 C -0.103 4.103 27 C 0.180 3.820 28 N -0.614 5.614 29 H 0.288 0.712 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.046 0.954 37 H 0.137 0.863 38 H 0.045 0.955 39 H 0.131 0.869 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -19.722 7.026 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.207 4.207 3 Si 0.823 3.177 4 H -0.183 1.183 5 H -0.174 1.174 6 H -0.186 1.186 7 C -0.448 4.448 8 H 0.116 0.884 9 C 0.117 3.883 10 N -0.260 5.260 11 C -0.017 4.017 12 C -0.326 4.326 13 C 0.002 3.998 14 C -0.132 4.132 15 C -0.116 4.116 16 C -0.128 4.128 17 C -0.138 4.138 18 C 0.350 3.650 19 O -0.463 6.463 20 N -0.342 5.342 21 C -0.068 4.068 22 C -0.034 4.034 23 O -0.308 6.308 24 C -0.025 4.025 25 C -0.049 4.049 26 C -0.122 4.122 27 C 0.006 3.994 28 N -0.333 5.333 29 H 0.099 0.901 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.189 0.811 33 H 0.182 0.818 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.065 0.935 37 H 0.155 0.845 38 H 0.064 0.936 39 H 0.149 0.851 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.339 -18.309 6.639 21.186 hybrid contribution -0.442 0.692 -0.282 0.868 sum -8.782 -17.617 6.357 20.686 Atomic orbital electron populations 1.70192 1.09281 1.30340 1.25983 1.27258 0.95904 1.05133 0.92394 0.84887 0.78784 0.74032 0.80023 1.18278 1.17446 1.18636 1.19832 0.95912 0.89034 1.40013 0.88400 1.20381 0.86317 0.92049 0.89536 1.69303 1.08732 1.28019 1.19901 1.23388 0.99653 0.88779 0.89889 1.19977 0.95505 0.94213 1.22938 1.18543 0.91789 0.92426 0.97053 1.21656 1.01095 0.91312 0.99117 1.21391 0.93607 0.98511 0.98115 1.21763 0.94831 0.96847 0.99400 1.19646 0.91635 0.95318 1.07224 1.18729 0.87973 0.79616 0.78688 1.90752 1.69827 1.40678 1.45078 1.48099 1.07941 1.35720 1.42483 1.23398 0.98636 0.94866 0.89926 1.23280 0.81083 1.03012 0.96051 1.87943 1.21069 1.50217 1.71620 1.23026 0.98538 0.92187 0.88759 1.22441 0.79169 1.04079 0.99206 1.21091 0.93708 0.97150 1.00259 1.23350 0.90999 0.96181 0.88840 1.68677 1.41201 0.99521 1.23937 0.90083 0.84587 0.83995 0.81079 0.81793 0.87522 0.86286 0.93530 0.84536 0.93630 0.85134 0.89695 0.88685 0.88158 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.48 11.44 21.86 0.25 -39.23 16 2 C 0.02 0.90 5.49 85.33 0.47 1.37 16 3 Si 1.00 37.17 29.57 68.60 2.03 39.20 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 5 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 6 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 7 C -0.41 -22.95 9.35 23.44 0.22 -22.73 16 8 H 0.10 5.15 7.86 -2.91 -0.02 5.13 16 9 C 0.35 20.29 7.35 134.91 0.99 21.28 16 10 N -0.54 -31.38 7.87 -193.17 -1.52 -32.90 16 11 C 0.16 8.00 10.70 85.26 0.91 8.92 16 12 C -0.32 -13.93 5.94 -19.64 -0.12 -14.04 16 13 C 0.00 0.13 5.88 -20.06 -0.12 0.01 16 14 C -0.11 -2.92 9.45 22.59 0.21 -2.70 16 15 C -0.10 -1.80 10.02 22.20 0.22 -1.58 16 16 C -0.11 -2.14 7.39 22.60 0.17 -1.98 16 17 C -0.14 -3.87 5.38 -20.12 -0.11 -3.98 16 18 C 0.56 16.80 7.43 86.79 0.64 17.45 16 19 O -0.58 -22.69 16.23 -3.90 -0.06 -22.76 16 20 N -0.61 -12.95 3.01 -819.92 -2.47 -15.42 16 21 C 0.05 0.70 4.92 86.49 0.43 1.13 16 22 C 0.04 0.55 7.00 72.22 0.51 1.05 16 23 O -0.39 -6.30 10.74 -148.98 -1.60 -7.90 16 24 C 0.05 0.79 6.98 72.08 0.50 1.29 16 25 C 0.07 1.33 6.65 86.35 0.57 1.91 16 26 C -0.10 -3.64 9.00 22.80 0.21 -3.43 16 27 C 0.18 7.91 10.70 85.26 0.91 8.83 16 28 N -0.61 -32.42 10.34 -193.18 -2.00 -34.42 16 29 H 0.29 13.74 8.29 -92.71 -0.77 12.97 16 30 H 0.14 6.49 6.33 -2.91 -0.02 6.47 16 31 H 0.14 3.12 6.27 -2.91 -0.02 3.10 16 32 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.16 1.97 5.66 -2.91 -0.02 1.96 16 34 H 0.11 0.90 7.94 -2.39 -0.02 0.88 16 35 H 0.12 1.51 4.52 -2.39 -0.01 1.50 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.88 7.06 -2.38 -0.02 1.86 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.10 4.04 6.19 -2.91 -0.02 4.02 16 43 H 0.18 5.92 6.32 -2.91 -0.02 5.90 16 Total: -1.00 -77.62 355.34 2.32 -75.30 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 1.07 Total: 25.34 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 6.62 Total: 12.78 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -5.74 Total: -121.96 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -1.66 Total: -30.66 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -77.62 2.32 -75.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240069836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.552 kcal (2) G-P(sol) polarization free energy of solvation -77.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds