Wall clock time and date at job start Tue Mar 31 2020 22:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48507 * 109.47051 * 269.99898 * 3 2 1 5 5 H 1.48493 * 109.47234 * 29.99803 * 3 2 1 6 6 H 1.48503 * 109.47332 * 150.00235 * 3 2 1 7 7 C 1.40170 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99988 * 158.38793 * 7 2 1 9 9 C 1.40817 * 119.99646 * 338.38643 * 7 2 1 10 10 C 1.41165 * 120.72689 * 329.29242 * 9 7 2 11 11 C 1.36857 * 118.39388 * 179.97438 * 10 9 7 12 12 C 1.38923 * 119.80113 * 0.25006 * 11 10 9 13 13 N 1.31697 * 121.51648 * 359.46751 * 12 11 10 14 14 C 1.32611 * 121.72273 * 0.54618 * 13 12 11 15 15 C 1.47734 * 119.99462 * 179.74645 * 14 13 12 16 16 C 1.40082 * 120.47045 * 314.56810 * 15 14 13 17 17 C 1.38220 * 118.36120 * 179.77819 * 16 15 14 18 18 C 1.39502 * 119.20822 * 0.47731 * 17 16 15 19 19 C 1.48047 * 119.56060 * 179.74372 * 18 17 16 20 20 O 1.21537 * 119.99979 * 351.18142 * 19 18 17 21 21 N 1.34778 * 120.00157 * 171.18672 * 19 18 17 22 22 C 1.47155 * 120.98127 * 173.81453 * 21 19 18 23 23 C 1.53718 * 108.15851 * 129.43305 * 22 21 19 24 24 O 1.42954 * 109.14740 * 52.53767 * 23 22 21 25 25 C 1.42971 * 114.16721 * 297.28971 * 24 23 22 26 26 C 1.47146 * 120.98243 * 354.09976 * 21 19 18 27 27 N 1.32843 * 120.87879 * 359.76727 * 18 17 16 28 28 C 1.31285 * 121.79808 * 359.97438 * 27 18 17 29 29 H 0.97003 * 119.99801 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.80398 * 359.95105 * 10 9 7 31 31 H 1.08000 * 120.09681 * 179.97438 * 11 10 9 32 32 H 1.08006 * 119.24545 * 179.73125 * 12 11 10 33 33 H 1.08007 * 120.82432 * 359.97438 * 16 15 14 34 34 H 1.08000 * 120.39554 * 180.21735 * 17 16 15 35 35 H 1.08994 * 109.68542 * 249.21143 * 22 21 19 36 36 H 1.09002 * 109.68002 * 9.77124 * 22 21 19 37 37 H 1.09003 * 109.65190 * 292.57164 * 23 22 21 38 38 H 1.08993 * 109.48077 * 172.40453 * 23 22 21 39 39 H 1.08999 * 109.51208 * 302.65305 * 25 24 23 40 40 H 1.09003 * 109.55018 * 182.52871 * 25 24 23 41 41 H 1.09003 * 109.67829 * 350.23837 * 26 21 19 42 42 H 1.09004 * 109.68287 * 110.74987 * 26 21 19 43 43 H 1.08005 * 119.65459 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4887 2.0464 -1.4001 5 1 1.4387 2.6526 0.7000 6 1 3.5388 1.4401 0.7000 7 6 2.0079 -1.2139 0.0005 8 1 3.0310 -1.2470 -0.3440 9 6 1.3780 -2.3903 0.4503 10 6 0.3813 -2.3383 1.4486 11 6 -0.1998 -3.5107 1.8497 12 6 0.2015 -4.7113 1.2776 13 7 1.1283 -4.7527 0.3428 14 6 1.7309 -3.6539 -0.0907 15 6 2.7696 -3.7452 -1.1373 16 6 3.7713 -4.7214 -1.0607 17 6 4.7186 -4.7704 -2.0661 18 6 4.6519 -3.8472 -3.1098 19 6 5.6659 -3.8890 -4.1878 20 8 6.6365 -4.6127 -4.0813 21 7 5.5126 -3.1244 -5.2871 22 6 6.5692 -3.0458 -6.3083 23 6 5.9296 -3.3105 -7.6808 24 8 4.8130 -2.4349 -7.8545 25 6 3.7603 -2.6339 -6.9077 26 6 4.2865 -2.3389 -5.4985 27 7 3.6911 -2.9307 -3.1490 28 6 2.7699 -2.8538 -2.2167 29 1 -0.4850 0.8401 -0.0004 30 1 0.0848 -1.3962 1.8855 31 1 -0.9650 -3.5028 2.6118 32 1 -0.2600 -5.6316 1.6040 33 1 3.8010 -5.4206 -0.2381 34 1 5.5034 -5.5119 -2.0418 35 1 7.0193 -2.0532 -6.2953 36 1 7.3318 -3.7979 -6.1062 37 1 5.5924 -4.3457 -7.7345 38 1 6.6630 -3.1254 -8.4655 39 1 3.4151 -3.6666 -6.9588 40 1 2.9329 -1.9618 -7.1356 41 1 3.5368 -2.6226 -4.7598 42 1 4.5105 -1.2763 -5.4047 43 1 2.0043 -2.0950 -2.2833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242650674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:24 Heat of formation + Delta-G solvation = 1.021728 kcal Electronic energy + Delta-G solvation = -28858.187778 eV Core-core repulsion = 24868.631218 eV Total energy + Delta-G solvation = -3989.556560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.63988 -39.40467 -38.43072 -37.83734 -34.77520 -34.39606 -32.85024 -31.59527 -31.34796 -30.88474 -29.28732 -27.78353 -26.02808 -24.59577 -23.99971 -22.95860 -22.19305 -21.63475 -20.72570 -19.71362 -17.66381 -17.45481 -16.76875 -16.36078 -16.10112 -15.76748 -15.62226 -15.39552 -15.14072 -14.76266 -14.56525 -14.38575 -14.28066 -13.77671 -13.48974 -13.19098 -13.14724 -12.81459 -12.60288 -12.30703 -12.20980 -11.83081 -11.74820 -11.60897 -11.42843 -11.38128 -11.23588 -10.80092 -10.77762 -10.24307 -10.14749 -10.09284 -9.57996 -9.51398 -8.94606 -8.69844 -8.50939 -8.34285 -8.31388 -7.67584 -7.18740 -4.76575 0.94872 1.70167 2.35380 2.63885 2.89236 2.91754 2.92671 3.00370 3.08070 3.65903 3.74972 4.23634 4.28875 4.35527 4.68161 4.91751 4.99563 5.11346 5.19287 5.21357 5.26546 5.27970 5.45617 5.48411 5.57877 5.58737 5.67290 5.70455 5.89360 6.01928 6.12979 6.17484 6.31780 6.39765 6.42738 6.58402 6.64018 6.72697 6.83827 6.94322 7.00594 7.17874 7.38077 7.44174 7.50491 7.62591 8.01557 8.09594 8.32502 8.33030 8.40099 9.30317 9.72413 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011894 B = 0.003638 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.644811 B = 7694.834186 C = 9074.376910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.083 3.917 3 Si 0.904 3.096 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.447 4.447 8 H 0.090 0.910 9 C 0.097 3.903 10 C -0.128 4.128 11 C -0.141 4.141 12 C -0.028 4.028 13 N -0.446 5.446 14 C -0.005 4.005 15 C 0.015 3.985 16 C -0.083 4.083 17 C -0.106 4.106 18 C 0.036 3.964 19 C 0.582 3.418 20 O -0.546 6.546 21 N -0.601 5.601 22 C 0.075 3.925 23 C 0.051 3.949 24 O -0.386 6.386 25 C 0.045 3.955 26 C 0.037 3.963 27 N -0.457 5.457 28 C 0.114 3.886 29 H 0.290 0.710 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.166 0.834 42 H 0.071 0.929 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -1.033 -7.680 9.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.092 3.908 10 C -0.154 4.154 11 C -0.162 4.162 12 C -0.190 4.190 13 N -0.153 5.153 14 C -0.142 4.142 15 C 0.012 3.988 16 C -0.109 4.109 17 C -0.127 4.127 18 C -0.100 4.100 19 C 0.371 3.629 20 O -0.423 6.423 21 N -0.334 5.334 22 C -0.048 4.048 23 C -0.027 4.027 24 O -0.304 6.304 25 C -0.033 4.033 26 C -0.085 4.085 27 N -0.168 5.168 28 C -0.046 4.046 29 H 0.101 0.899 30 H 0.135 0.865 31 H 0.120 0.880 32 H 0.142 0.858 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.181 0.819 42 H 0.089 0.911 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.153 -1.350 -8.857 10.336 hybrid contribution -0.076 0.999 1.386 1.710 sum 5.078 -0.351 -7.471 9.040 Atomic orbital electron populations 1.69737 1.07915 1.30601 1.30940 1.25983 0.94657 1.01625 0.91730 0.86337 0.80946 0.80014 0.80001 1.18740 1.19713 1.18064 1.19569 0.99894 0.91297 1.36737 0.89252 1.18246 0.90599 0.92230 0.89726 1.21238 0.99534 0.97001 0.97602 1.21461 0.99864 0.94402 1.00425 1.21686 1.00929 0.96319 1.00102 1.66984 1.06645 1.31561 1.10111 1.19220 1.03382 0.89793 1.01805 1.19638 0.92811 0.93111 0.93253 1.21725 0.92743 0.98208 0.98236 1.21822 0.99071 0.98550 0.93284 1.20728 0.96545 0.96296 0.96407 1.18019 0.84890 0.78844 0.81119 1.90725 1.31656 1.40522 1.79409 1.47904 1.18700 1.46173 1.20579 1.22377 0.91307 1.03332 0.87811 1.22999 0.89199 0.94015 0.96493 1.87925 1.28533 1.59529 1.54428 1.23143 0.90055 1.01471 0.88590 1.23794 0.89135 0.96327 0.99270 1.67229 1.03115 1.20544 1.25921 1.23319 0.95834 0.97470 0.88023 0.89909 0.86524 0.87971 0.85788 0.84498 0.84381 0.90734 0.88274 0.92782 0.87978 0.93040 0.87708 0.81878 0.91056 0.80702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -16.97 11.68 55.56 0.65 -16.32 16 2 C 0.08 1.77 5.03 -17.30 -0.09 1.68 16 3 Si 0.90 16.43 29.61 -169.99 -5.03 11.39 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.45 -10.03 6.67 -37.88 -0.25 -10.28 16 8 H 0.09 1.99 6.74 -52.48 -0.35 1.64 16 9 C 0.10 2.24 5.48 -106.41 -0.58 1.66 16 10 C -0.13 -2.88 8.75 -38.97 -0.34 -3.22 16 11 C -0.14 -2.89 10.03 -39.83 -0.40 -3.29 16 12 C -0.03 -0.58 11.16 -17.36 -0.19 -0.77 16 13 N -0.45 -9.92 10.18 -9.17 -0.09 -10.01 16 14 C 0.00 -0.11 6.43 -82.25 -0.53 -0.64 16 15 C 0.01 0.30 5.23 -104.67 -0.55 -0.25 16 16 C -0.08 -1.50 9.83 -38.90 -0.38 -1.88 16 17 C -0.11 -1.81 9.61 -39.12 -0.38 -2.18 16 18 C 0.04 0.62 6.61 -82.94 -0.55 0.08 16 19 C 0.58 9.96 7.67 -12.24 -0.09 9.86 16 20 O -0.55 -10.24 15.81 5.33 0.08 -10.16 16 21 N -0.60 -8.84 3.01 -173.05 -0.52 -9.36 16 22 C 0.07 0.90 6.68 -3.31 -0.02 0.88 16 23 C 0.05 0.53 7.00 37.53 0.26 0.80 16 24 O -0.39 -4.82 10.74 -35.23 -0.38 -5.19 16 25 C 0.04 0.53 6.99 37.31 0.26 0.79 16 26 C 0.04 0.50 6.06 -3.54 -0.02 0.48 16 27 N -0.46 -7.97 6.06 -9.45 -0.06 -8.03 16 28 C 0.11 2.16 9.12 -17.13 -0.16 2.00 16 29 H 0.29 5.80 8.29 -40.82 -0.34 5.46 16 30 H 0.12 2.64 6.88 -52.49 -0.36 2.28 16 31 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 33 H 0.14 2.34 8.06 -52.48 -0.42 1.91 16 34 H 0.14 2.15 7.65 -52.49 -0.40 1.74 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.21 7.06 -51.93 -0.37 0.85 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.17 2.43 4.10 -83.09 -0.34 2.09 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.18 3.39 6.89 -52.48 -0.36 3.03 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -26.21 357.39 -9.10 -35.31 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.12 Total: 11.28 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -4.01 Total: -4.29 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.02 Total: -43.72 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.29 Total: -15.35 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.03 Total: 11.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.21 -9.10 -35.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242650674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.331 kcal (2) G-P(sol) polarization free energy of solvation -26.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds