Wall clock time and date at job start Tue Mar 31 2020 22:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48507 * 109.47051 * 269.99898 * 3 2 1 5 5 H 1.48493 * 109.47234 * 29.99803 * 3 2 1 6 6 H 1.48503 * 109.47332 * 150.00235 * 3 2 1 7 7 C 1.40170 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99988 * 158.38793 * 7 2 1 9 9 C 1.40817 * 119.99646 * 338.38643 * 7 2 1 10 10 C 1.41165 * 120.72689 * 329.29242 * 9 7 2 11 11 C 1.36857 * 118.39388 * 179.97438 * 10 9 7 12 12 C 1.38923 * 119.80113 * 0.25006 * 11 10 9 13 13 N 1.31697 * 121.51648 * 359.46751 * 12 11 10 14 14 C 1.32611 * 121.72273 * 0.54618 * 13 12 11 15 15 C 1.47734 * 119.99462 * 179.74645 * 14 13 12 16 16 C 1.40082 * 120.47045 * 314.56810 * 15 14 13 17 17 C 1.38220 * 118.36120 * 179.77819 * 16 15 14 18 18 C 1.39502 * 119.20822 * 0.47731 * 17 16 15 19 19 C 1.48047 * 119.56060 * 179.74372 * 18 17 16 20 20 O 1.21537 * 119.99979 * 351.18142 * 19 18 17 21 21 N 1.34778 * 120.00157 * 171.18672 * 19 18 17 22 22 C 1.47155 * 120.98127 * 173.81453 * 21 19 18 23 23 C 1.53718 * 108.15851 * 129.43305 * 22 21 19 24 24 O 1.42954 * 109.14740 * 52.53767 * 23 22 21 25 25 C 1.42971 * 114.16721 * 297.28971 * 24 23 22 26 26 C 1.47146 * 120.98243 * 354.09976 * 21 19 18 27 27 N 1.32843 * 120.87879 * 359.76727 * 18 17 16 28 28 C 1.31285 * 121.79808 * 359.97438 * 27 18 17 29 29 H 0.97003 * 119.99801 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.80398 * 359.95105 * 10 9 7 31 31 H 1.08000 * 120.09681 * 179.97438 * 11 10 9 32 32 H 1.08006 * 119.24545 * 179.73125 * 12 11 10 33 33 H 1.08007 * 120.82432 * 359.97438 * 16 15 14 34 34 H 1.08000 * 120.39554 * 180.21735 * 17 16 15 35 35 H 1.08994 * 109.68542 * 249.21143 * 22 21 19 36 36 H 1.09002 * 109.68002 * 9.77124 * 22 21 19 37 37 H 1.09003 * 109.65190 * 292.57164 * 23 22 21 38 38 H 1.08993 * 109.48077 * 172.40453 * 23 22 21 39 39 H 1.08999 * 109.51208 * 302.65305 * 25 24 23 40 40 H 1.09003 * 109.55018 * 182.52871 * 25 24 23 41 41 H 1.09003 * 109.67829 * 350.23837 * 26 21 19 42 42 H 1.09004 * 109.68287 * 110.74987 * 26 21 19 43 43 H 1.08005 * 119.65459 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4887 2.0464 -1.4001 5 1 1.4387 2.6526 0.7000 6 1 3.5388 1.4401 0.7000 7 6 2.0079 -1.2139 0.0005 8 1 3.0310 -1.2470 -0.3440 9 6 1.3780 -2.3903 0.4503 10 6 0.3813 -2.3383 1.4486 11 6 -0.1998 -3.5107 1.8497 12 6 0.2015 -4.7113 1.2776 13 7 1.1283 -4.7527 0.3428 14 6 1.7309 -3.6539 -0.0907 15 6 2.7696 -3.7452 -1.1373 16 6 3.7713 -4.7214 -1.0607 17 6 4.7186 -4.7704 -2.0661 18 6 4.6519 -3.8472 -3.1098 19 6 5.6659 -3.8890 -4.1878 20 8 6.6365 -4.6127 -4.0813 21 7 5.5126 -3.1244 -5.2871 22 6 6.5692 -3.0458 -6.3083 23 6 5.9296 -3.3105 -7.6808 24 8 4.8130 -2.4349 -7.8545 25 6 3.7603 -2.6339 -6.9077 26 6 4.2865 -2.3389 -5.4985 27 7 3.6911 -2.9307 -3.1490 28 6 2.7699 -2.8538 -2.2167 29 1 -0.4850 0.8401 -0.0004 30 1 0.0848 -1.3962 1.8855 31 1 -0.9650 -3.5028 2.6118 32 1 -0.2600 -5.6316 1.6040 33 1 3.8010 -5.4206 -0.2381 34 1 5.5034 -5.5119 -2.0418 35 1 7.0193 -2.0532 -6.2953 36 1 7.3318 -3.7979 -6.1062 37 1 5.5924 -4.3457 -7.7345 38 1 6.6630 -3.1254 -8.4655 39 1 3.4151 -3.6666 -6.9588 40 1 2.9329 -1.9618 -7.1356 41 1 3.5368 -2.6226 -4.7598 42 1 4.5105 -1.2763 -5.4047 43 1 2.0043 -2.0950 -2.2833 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242650674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:23 Heat of formation + Delta-G solvation = -12.871519 kcal Electronic energy + Delta-G solvation = -28858.790235 eV Core-core repulsion = 24868.631218 eV Total energy + Delta-G solvation = -3990.159017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.96204 -40.76308 -39.85426 -39.12741 -36.03737 -35.95156 -34.28999 -33.05949 -32.57874 -32.34038 -30.77818 -28.93908 -27.64483 -25.91362 -25.14927 -24.37513 -23.51429 -23.16768 -22.22594 -20.93139 -19.31596 -18.70065 -18.10029 -17.83506 -17.32566 -17.04559 -16.86457 -16.77245 -16.16689 -16.14549 -15.87972 -15.77377 -15.66737 -15.18767 -14.77077 -14.60261 -14.48125 -14.24262 -14.12300 -13.84776 -13.40232 -13.31379 -13.20858 -13.13068 -12.77365 -12.61779 -12.34800 -12.26912 -11.82901 -11.74575 -11.46988 -11.24583 -11.18432 -10.98048 -10.46446 -10.04098 -10.02453 -9.98577 -9.61627 -9.29137 -8.80103 -6.45712 -0.50671 0.26258 0.74988 1.00624 1.39860 1.46022 1.52943 1.65789 1.75734 2.14962 2.65317 2.80616 2.84282 3.02386 3.56251 3.61488 3.71885 3.81754 4.02430 4.04004 4.10469 4.11739 4.19721 4.27313 4.31277 4.47501 4.54787 4.63578 4.70931 4.73094 4.78903 4.82482 4.88495 4.91708 5.00269 5.13245 5.13551 5.26323 5.38005 5.40791 5.71677 5.78980 5.85685 5.96989 6.10539 6.14652 6.41143 6.62431 6.66158 6.73201 6.97481 7.63248 8.14189 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011894 B = 0.003638 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.644811 B = 7694.834186 C = 9074.376910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.056 3.944 3 Si 0.963 3.037 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.083 0.917 9 C 0.073 3.927 10 C -0.150 4.150 11 C -0.139 4.139 12 C -0.034 4.034 13 N -0.461 5.461 14 C -0.015 4.015 15 C -0.007 4.007 16 C -0.077 4.077 17 C -0.102 4.102 18 C 0.034 3.966 19 C 0.578 3.422 20 O -0.566 6.566 21 N -0.598 5.598 22 C 0.071 3.929 23 C 0.053 3.947 24 O -0.395 6.395 25 C 0.049 3.951 26 C 0.037 3.963 27 N -0.446 5.446 28 C 0.113 3.887 29 H 0.297 0.703 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.133 0.867 39 H 0.052 0.948 40 H 0.123 0.877 41 H 0.152 0.848 42 H 0.073 0.927 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 -0.895 -8.759 10.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.164 4.164 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.492 4.492 8 H 0.101 0.899 9 C 0.069 3.931 10 C -0.176 4.176 11 C -0.159 4.159 12 C -0.196 4.196 13 N -0.169 5.169 14 C -0.152 4.152 15 C -0.010 4.010 16 C -0.103 4.103 17 C -0.123 4.123 18 C -0.102 4.102 19 C 0.366 3.634 20 O -0.446 6.446 21 N -0.329 5.329 22 C -0.051 4.051 23 C -0.025 4.025 24 O -0.313 6.313 25 C -0.028 4.028 26 C -0.086 4.086 27 N -0.158 5.158 28 C -0.047 4.047 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.151 0.849 39 H 0.070 0.930 40 H 0.141 0.859 41 H 0.168 0.832 42 H 0.091 0.909 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.742 -1.202 -9.957 11.557 hybrid contribution -0.242 0.868 1.659 1.888 sum 5.500 -0.334 -8.299 9.961 Atomic orbital electron populations 1.69752 1.08926 1.31715 1.31536 1.26550 0.95135 1.03750 0.90987 0.85462 0.79379 0.76805 0.79964 1.18305 1.18781 1.18865 1.19593 0.99705 0.92005 1.37859 0.89947 1.18534 0.91313 0.92972 0.90314 1.21309 1.00503 0.97516 0.98279 1.21764 0.99920 0.93618 1.00591 1.22254 1.00328 0.97623 0.99428 1.67050 1.07346 1.31631 1.10880 1.19524 1.03846 0.89681 1.02186 1.19677 0.93384 0.94493 0.93478 1.21800 0.92283 0.97591 0.98629 1.21978 0.99005 0.98668 0.92643 1.21048 0.96358 0.96081 0.96752 1.17962 0.84499 0.79280 0.81619 1.90711 1.32299 1.41607 1.79941 1.48046 1.19548 1.45088 1.20267 1.22603 0.90740 1.03943 0.87848 1.23141 0.89219 0.93790 0.96299 1.87922 1.28978 1.60076 1.54361 1.23147 0.90405 1.02028 0.87243 1.23761 0.88407 0.96126 1.00256 1.67402 1.02754 1.20481 1.25126 1.23135 0.96152 0.97177 0.88238 0.89149 0.87358 0.84917 0.82801 0.83675 0.82679 0.89666 0.88417 0.92787 0.84939 0.93000 0.85883 0.83179 0.90904 0.81719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -35.58 11.68 21.87 0.26 -35.32 16 2 C 0.06 2.43 5.03 85.33 0.43 2.86 16 3 Si 0.96 33.71 29.61 68.60 2.03 35.74 16 4 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 5 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.46 -21.36 6.67 23.37 0.16 -21.20 16 8 H 0.08 3.80 6.74 -2.91 -0.02 3.78 16 9 C 0.07 3.48 5.48 -21.02 -0.12 3.36 16 10 C -0.15 -6.86 8.75 22.66 0.20 -6.67 16 11 C -0.14 -5.61 10.03 22.11 0.22 -5.39 16 12 C -0.03 -1.39 11.16 84.88 0.95 -0.44 16 13 N -0.46 -20.50 10.18 -182.93 -1.86 -22.37 16 14 C -0.02 -0.70 6.43 42.45 0.27 -0.42 16 15 C -0.01 -0.30 5.23 -19.89 -0.10 -0.40 16 16 C -0.08 -2.76 9.83 22.71 0.22 -2.54 16 17 C -0.10 -3.40 9.61 22.57 0.22 -3.18 16 18 C 0.03 1.16 6.61 41.90 0.28 1.44 16 19 C 0.58 19.21 7.67 86.85 0.67 19.88 16 20 O -0.57 -20.67 15.81 -3.83 -0.06 -20.73 16 21 N -0.60 -16.79 3.01 -819.70 -2.47 -19.26 16 22 C 0.07 1.57 6.68 86.50 0.58 2.14 16 23 C 0.05 0.97 7.00 72.22 0.51 1.48 16 24 O -0.39 -8.87 10.74 -148.98 -1.60 -10.47 16 25 C 0.05 1.06 6.99 72.08 0.50 1.57 16 26 C 0.04 0.95 6.06 86.35 0.52 1.47 16 27 N -0.45 -15.55 6.06 -183.81 -1.11 -16.67 16 28 C 0.11 4.36 9.12 85.20 0.78 5.14 16 29 H 0.30 11.96 8.29 -92.71 -0.77 11.19 16 30 H 0.11 5.02 6.88 -2.91 -0.02 5.00 16 31 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.15 5.15 8.06 -2.91 -0.02 5.13 16 33 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.16 4.62 7.65 -2.91 -0.02 4.59 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 2.23 7.06 -2.39 -0.02 2.21 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.15 4.38 4.10 -63.92 -0.26 4.12 16 42 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.17 6.65 6.89 -2.91 -0.02 6.63 16 Total: -1.00 -55.80 357.39 2.26 -53.54 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.80 Total: 36.43 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 6.28 Total: -0.91 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -5.19 Total: -93.61 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -1.66 Total: -31.20 kcal Atomic # 14 Polarization: 33.71 SS G_CDS: 2.03 Total: 35.74 kcal Total: -55.80 2.26 -53.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242650674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.670 kcal (2) G-P(sol) polarization free energy of solvation -55.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds