Wall clock time and date at job start Tue Mar 31 2020 22:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30726 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48500 * 109.46862 * 272.71623 * 3 2 1 5 5 H 1.48491 * 109.46949 * 32.71853 * 3 2 1 6 6 H 1.48505 * 109.46829 * 152.72287 * 3 2 1 7 7 C 1.40052 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99892 * 348.30542 * 7 2 1 9 9 C 1.41517 * 120.00479 * 168.31256 * 7 2 1 10 10 C 1.41132 * 120.98283 * 329.86855 * 9 7 2 11 11 C 1.37800 * 119.07072 * 179.97438 * 10 9 7 12 12 N 1.31876 * 121.16342 * 0.02562 * 11 10 9 13 13 C 1.32824 * 122.21000 * 359.97438 * 12 11 10 14 14 C 1.48299 * 119.61501 * 179.97438 * 13 12 11 15 15 C 1.39758 * 120.44105 * 4.97511 * 14 13 12 16 16 C 1.38326 * 118.38115 * 179.77131 * 15 14 13 17 17 C 1.39423 * 119.18124 * 0.49411 * 16 15 14 18 18 C 1.48083 * 119.59352 * 179.77085 * 17 16 15 19 19 O 1.21525 * 119.99934 * 347.42327 * 18 17 16 20 20 N 1.34772 * 120.00354 * 167.69977 * 18 17 16 21 21 C 1.47145 * 120.98267 * 178.27253 * 20 18 17 22 22 C 1.53723 * 108.15909 * 129.43289 * 21 20 18 23 23 O 1.42957 * 109.14780 * 52.53995 * 22 21 20 24 24 C 1.42958 * 114.16330 * 297.28869 * 23 22 21 25 25 C 1.47158 * 120.98137 * 358.55597 * 20 18 17 26 26 N 1.32786 * 120.81659 * 359.49815 * 17 16 15 27 27 C 1.31359 * 121.76660 * 0.24728 * 26 17 16 28 28 C 1.38926 * 120.77046 * 0.25571 * 13 12 11 29 29 H 0.97007 * 119.99785 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.46334 * 359.97438 * 10 9 7 31 31 H 1.08002 * 119.41917 * 180.02562 * 11 10 9 32 32 H 1.07995 * 120.81271 * 0.02575 * 15 14 13 33 33 H 1.07996 * 120.40943 * 180.26777 * 16 15 14 34 34 H 1.09005 * 109.68404 * 249.20797 * 21 20 18 35 35 H 1.08994 * 109.68440 * 9.76644 * 21 20 18 36 36 H 1.08998 * 109.65462 * 292.57020 * 22 21 20 37 37 H 1.09004 * 109.47836 * 172.39941 * 22 21 20 38 38 H 1.09007 * 109.51526 * 302.65412 * 24 23 22 39 39 H 1.09001 * 109.55501 * 182.53531 * 24 23 22 40 40 H 1.09000 * 109.67643 * 350.23314 * 25 20 18 41 41 H 1.09000 * 109.68312 * 110.74794 * 25 20 18 42 42 H 1.07996 * 119.62933 * 179.97438 * 27 26 17 43 43 H 1.08002 * 120.62255 * 179.72764 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4313 2.0796 -1.3985 5 1 1.4687 2.6353 0.7567 6 1 3.5665 1.4242 0.6417 7 6 2.0075 -1.2129 -0.0005 8 1 1.4844 -2.1385 0.1886 9 6 3.4007 -1.2256 -0.2488 10 6 4.0000 -0.2523 -1.0766 11 6 5.3603 -0.3015 -1.2912 12 7 6.1049 -1.2391 -0.7382 13 6 5.5920 -2.1783 0.0485 14 6 6.4828 -3.2058 0.6400 15 6 7.8668 -3.1315 0.4599 16 6 8.6580 -4.1100 1.0343 17 6 8.0522 -5.1353 1.7593 18 6 8.8902 -6.1903 2.3738 19 8 10.0602 -6.2951 2.0626 20 7 8.3540 -7.0378 3.2742 21 6 9.1568 -8.1174 3.8700 22 6 8.9936 -8.0491 5.3970 23 8 7.6010 -8.0419 5.7199 24 6 6.8896 -6.9081 5.2176 25 6 6.9465 -6.9145 3.6858 26 7 6.7336 -5.1746 1.9101 27 6 5.9499 -4.2610 1.3840 28 6 4.2297 -2.2128 0.3191 29 1 -0.4850 0.8401 0.0004 30 1 3.4009 0.5203 -1.5355 31 1 5.8249 0.4407 -1.9233 32 1 8.3081 -2.3275 -0.1103 33 1 9.7315 -4.0820 0.9196 34 1 8.8050 -9.0818 3.5032 35 1 10.2056 -7.9839 3.6054 36 1 9.4598 -7.1393 5.7751 37 1 9.4685 -8.9180 5.8525 38 1 7.3481 -5.9940 5.5952 39 1 5.8506 -6.9556 5.5436 40 1 6.5312 -5.9839 3.2991 41 1 6.3759 -7.7594 3.3001 42 1 4.8816 -4.3268 1.5280 43 1 3.8146 -2.9802 0.9556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242651557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:01 Heat of formation + Delta-G solvation = 7.077884 kcal Electronic energy + Delta-G solvation = -28058.356234 eV Core-core repulsion = 24069.062288 eV Total energy + Delta-G solvation = -3989.293946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99756 -39.71269 -38.68490 -38.13609 -35.03015 -34.35416 -33.09062 -32.07952 -31.60900 -31.42472 -29.34190 -27.94087 -26.25598 -24.98368 -24.20110 -23.68648 -22.41278 -21.61716 -20.93002 -20.01093 -17.99393 -17.73531 -17.07150 -16.46342 -16.11766 -15.93892 -15.86259 -15.64378 -15.32930 -15.07543 -14.86591 -14.48176 -14.35318 -14.01033 -13.96653 -13.58695 -13.36322 -13.22808 -13.10723 -12.77510 -12.43634 -12.26869 -11.74488 -11.71021 -11.60396 -11.14850 -11.05721 -10.92812 -10.88620 -10.42549 -10.38494 -10.06670 -9.90703 -9.58205 -9.37932 -9.02440 -8.73298 -8.53623 -8.40466 -7.73816 -7.22192 -4.92641 0.44481 1.24853 2.12789 2.36787 2.66830 2.80610 2.93444 3.03784 3.11303 3.58705 3.73422 3.82075 3.95830 4.39617 4.46817 4.64439 4.67772 4.76257 4.89766 4.98982 5.02476 5.06746 5.09464 5.16355 5.17544 5.32476 5.43206 5.52900 5.62512 5.65779 5.76724 5.95206 6.04859 6.10211 6.15027 6.29590 6.35370 6.45040 6.63696 6.73082 6.84380 6.88262 6.95488 7.12262 7.39416 7.55714 7.66992 7.98632 8.00530 8.18983 8.44164 9.02827 9.78574 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018545 B = 0.002525 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.501541 B =11085.915204 C =12236.585608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.083 3.917 3 Si 0.917 3.083 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.431 4.431 8 H 0.097 0.903 9 C 0.106 3.894 10 C -0.281 4.281 11 C 0.123 3.877 12 N -0.563 5.563 13 C 0.151 3.849 14 C -0.033 4.033 15 C -0.055 4.055 16 C -0.109 4.109 17 C 0.057 3.943 18 C 0.579 3.421 19 O -0.539 6.539 20 N -0.598 5.598 21 C 0.074 3.926 22 C 0.050 3.950 23 O -0.384 6.384 24 C 0.045 3.955 25 C 0.030 3.970 26 N -0.452 5.452 27 C 0.102 3.898 28 C -0.226 4.226 29 H 0.291 0.709 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.052 0.948 39 H 0.106 0.894 40 H 0.168 0.832 41 H 0.072 0.928 42 H 0.172 0.828 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.239 -8.712 7.188 15.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.461 4.461 8 H 0.115 0.885 9 C 0.098 3.902 10 C -0.303 4.303 11 C -0.032 4.032 12 N -0.278 5.278 13 C 0.020 3.980 14 C -0.036 4.036 15 C -0.081 4.081 16 C -0.130 4.130 17 C -0.079 4.079 18 C 0.367 3.633 19 O -0.416 6.416 20 N -0.331 5.331 21 C -0.049 4.049 22 C -0.028 4.028 23 O -0.303 6.303 24 C -0.033 4.033 25 C -0.092 4.092 26 N -0.163 5.163 27 C -0.058 4.058 28 C -0.249 4.249 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.183 0.817 41 H 0.091 0.909 42 H 0.189 0.811 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.085 -9.540 7.460 17.108 hybrid contribution -0.485 1.610 -0.556 1.771 sum 11.600 -7.930 6.904 15.656 Atomic orbital electron populations 1.69586 1.08102 1.30869 1.33266 1.26225 0.94917 1.01977 0.90734 0.86232 0.80895 0.79253 0.79226 1.19308 1.21640 1.16693 1.19569 0.90628 0.95877 1.40014 0.88489 1.17875 0.93619 0.90264 0.88445 1.22007 0.96260 1.05309 1.06755 1.21890 0.90696 0.94669 0.95905 1.67292 1.39718 1.06059 1.14698 1.18962 0.90269 0.93113 0.95693 1.19997 0.93701 0.94413 0.95510 1.21824 0.92648 0.97716 0.95892 1.21993 1.01938 0.93275 0.95813 1.20906 0.90408 0.96357 1.00266 1.17953 0.86131 0.80505 0.78720 1.90756 1.16201 1.72301 1.62355 1.47934 1.12810 1.30333 1.42000 1.22417 0.98135 0.90520 0.93790 1.23018 0.83164 1.02702 0.93876 1.87940 1.20559 1.45083 1.76698 1.23123 0.97822 0.88637 0.93670 1.23927 0.81249 1.09299 0.94759 1.67197 1.04348 1.25850 1.18931 1.23136 1.00391 0.89262 0.93030 1.21915 0.92432 1.04337 1.06199 0.89868 0.87231 0.85153 0.82911 0.83671 0.90527 0.88159 0.92716 0.87789 0.92979 0.87586 0.81664 0.90920 0.81106 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.36 13.92 55.55 0.77 -18.59 16 2 C 0.08 1.97 5.49 -17.34 -0.10 1.88 16 3 Si 0.92 18.95 24.40 -169.99 -4.15 14.80 16 4 H -0.27 -5.31 6.69 56.52 0.38 -4.93 16 5 H -0.29 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.24 -5.19 6.58 56.52 0.37 -4.82 16 7 C -0.43 -10.47 9.67 -37.65 -0.36 -10.83 16 8 H 0.10 2.45 8.06 -52.49 -0.42 2.02 16 9 C 0.11 2.42 5.18 -106.55 -0.55 1.86 16 10 C -0.28 -6.11 7.07 -38.64 -0.27 -6.39 16 11 C 0.12 2.47 11.15 -17.69 -0.20 2.27 16 12 N -0.56 -11.38 9.47 -9.94 -0.09 -11.47 16 13 C 0.15 2.94 6.72 -83.04 -0.56 2.38 16 14 C -0.03 -0.54 5.90 -104.65 -0.62 -1.16 16 15 C -0.05 -0.81 9.68 -38.98 -0.38 -1.19 16 16 C -0.11 -1.52 9.61 -39.11 -0.38 -1.89 16 17 C 0.06 0.82 6.61 -82.97 -0.55 0.27 16 18 C 0.58 8.37 7.67 -12.22 -0.09 8.28 16 19 O -0.54 -8.85 15.85 5.34 0.08 -8.76 16 20 N -0.60 -7.35 3.01 -173.04 -0.52 -7.88 16 21 C 0.07 0.75 6.67 -3.31 -0.02 0.73 16 22 C 0.05 0.44 7.00 37.53 0.26 0.70 16 23 O -0.38 -4.13 10.74 -35.23 -0.38 -4.51 16 24 C 0.04 0.44 6.98 37.31 0.26 0.70 16 25 C 0.03 0.33 6.17 -3.53 -0.02 0.31 16 26 N -0.45 -6.21 6.06 -9.53 -0.06 -6.26 16 27 C 0.10 1.45 10.58 -17.21 -0.18 1.27 16 28 C -0.23 -4.62 9.25 -38.33 -0.35 -4.97 16 29 H 0.29 6.38 8.29 -40.82 -0.34 6.04 16 30 H 0.11 2.34 4.33 -52.49 -0.23 2.11 16 31 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 32 H 0.15 2.20 7.62 -52.49 -0.40 1.80 16 33 H 0.15 1.82 7.68 -52.49 -0.40 1.42 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.03 7.07 -51.93 -0.37 0.67 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.17 1.95 3.91 -89.01 -0.35 1.60 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.17 2.18 6.21 -52.49 -0.33 1.85 16 43 H 0.12 2.09 6.23 -52.49 -0.33 1.76 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -27.64 351.55 -8.12 -35.77 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.97 Total: 7.38 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -4.11 Total: -5.78 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.10 Total: -44.20 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.29 Total: -13.28 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.15 Total: 14.80 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.64 -8.12 -35.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242651557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.844 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds