Wall clock time and date at job start Tue Mar 31 2020 22:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30726 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48500 * 109.46862 * 272.71623 * 3 2 1 5 5 H 1.48491 * 109.46949 * 32.71853 * 3 2 1 6 6 H 1.48505 * 109.46829 * 152.72287 * 3 2 1 7 7 C 1.40052 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99892 * 348.30542 * 7 2 1 9 9 C 1.41517 * 120.00479 * 168.31256 * 7 2 1 10 10 C 1.41132 * 120.98283 * 329.86855 * 9 7 2 11 11 C 1.37800 * 119.07072 * 179.97438 * 10 9 7 12 12 N 1.31876 * 121.16342 * 0.02562 * 11 10 9 13 13 C 1.32824 * 122.21000 * 359.97438 * 12 11 10 14 14 C 1.48299 * 119.61501 * 179.97438 * 13 12 11 15 15 C 1.39758 * 120.44105 * 4.97511 * 14 13 12 16 16 C 1.38326 * 118.38115 * 179.77131 * 15 14 13 17 17 C 1.39423 * 119.18124 * 0.49411 * 16 15 14 18 18 C 1.48083 * 119.59352 * 179.77085 * 17 16 15 19 19 O 1.21525 * 119.99934 * 347.42327 * 18 17 16 20 20 N 1.34772 * 120.00354 * 167.69977 * 18 17 16 21 21 C 1.47145 * 120.98267 * 178.27253 * 20 18 17 22 22 C 1.53723 * 108.15909 * 129.43289 * 21 20 18 23 23 O 1.42957 * 109.14780 * 52.53995 * 22 21 20 24 24 C 1.42958 * 114.16330 * 297.28869 * 23 22 21 25 25 C 1.47158 * 120.98137 * 358.55597 * 20 18 17 26 26 N 1.32786 * 120.81659 * 359.49815 * 17 16 15 27 27 C 1.31359 * 121.76660 * 0.24728 * 26 17 16 28 28 C 1.38926 * 120.77046 * 0.25571 * 13 12 11 29 29 H 0.97007 * 119.99785 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.46334 * 359.97438 * 10 9 7 31 31 H 1.08002 * 119.41917 * 180.02562 * 11 10 9 32 32 H 1.07995 * 120.81271 * 0.02575 * 15 14 13 33 33 H 1.07996 * 120.40943 * 180.26777 * 16 15 14 34 34 H 1.09005 * 109.68404 * 249.20797 * 21 20 18 35 35 H 1.08994 * 109.68440 * 9.76644 * 21 20 18 36 36 H 1.08998 * 109.65462 * 292.57020 * 22 21 20 37 37 H 1.09004 * 109.47836 * 172.39941 * 22 21 20 38 38 H 1.09007 * 109.51526 * 302.65412 * 24 23 22 39 39 H 1.09001 * 109.55501 * 182.53531 * 24 23 22 40 40 H 1.09000 * 109.67643 * 350.23314 * 25 20 18 41 41 H 1.09000 * 109.68312 * 110.74794 * 25 20 18 42 42 H 1.07996 * 119.62933 * 179.97438 * 27 26 17 43 43 H 1.08002 * 120.62255 * 179.72764 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4313 2.0796 -1.3985 5 1 1.4687 2.6353 0.7567 6 1 3.5665 1.4242 0.6417 7 6 2.0075 -1.2129 -0.0005 8 1 1.4844 -2.1385 0.1886 9 6 3.4007 -1.2256 -0.2488 10 6 4.0000 -0.2523 -1.0766 11 6 5.3603 -0.3015 -1.2912 12 7 6.1049 -1.2391 -0.7382 13 6 5.5920 -2.1783 0.0485 14 6 6.4828 -3.2058 0.6400 15 6 7.8668 -3.1315 0.4599 16 6 8.6580 -4.1100 1.0343 17 6 8.0522 -5.1353 1.7593 18 6 8.8902 -6.1903 2.3738 19 8 10.0602 -6.2951 2.0626 20 7 8.3540 -7.0378 3.2742 21 6 9.1568 -8.1174 3.8700 22 6 8.9936 -8.0491 5.3970 23 8 7.6010 -8.0419 5.7199 24 6 6.8896 -6.9081 5.2176 25 6 6.9465 -6.9145 3.6858 26 7 6.7336 -5.1746 1.9101 27 6 5.9499 -4.2610 1.3840 28 6 4.2297 -2.2128 0.3191 29 1 -0.4850 0.8401 0.0004 30 1 3.4009 0.5203 -1.5355 31 1 5.8249 0.4407 -1.9233 32 1 8.3081 -2.3275 -0.1103 33 1 9.7315 -4.0820 0.9196 34 1 8.8050 -9.0818 3.5032 35 1 10.2056 -7.9839 3.6054 36 1 9.4598 -7.1393 5.7751 37 1 9.4685 -8.9180 5.8525 38 1 7.3481 -5.9940 5.5952 39 1 5.8506 -6.9556 5.5436 40 1 6.5312 -5.9839 3.2991 41 1 6.3759 -7.7594 3.3001 42 1 4.8816 -4.3268 1.5280 43 1 3.8146 -2.9802 0.9556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242651557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:00 Heat of formation + Delta-G solvation = -9.407561 kcal Electronic energy + Delta-G solvation = -28059.071096 eV Core-core repulsion = 24069.062288 eV Total energy + Delta-G solvation = -3990.008808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10391 -40.89358 -40.04475 -39.20179 -36.14588 -35.90928 -34.39478 -33.37315 -33.11392 -32.35776 -30.68099 -28.92306 -27.95575 -26.13611 -25.21197 -24.85544 -23.52031 -23.02395 -22.40613 -21.00479 -19.62910 -18.77386 -18.26049 -17.75421 -17.22977 -17.12813 -16.99060 -16.84653 -16.45268 -16.10066 -16.03767 -15.83734 -15.66538 -15.21474 -15.13670 -14.81699 -14.76611 -14.53776 -14.48391 -14.07605 -13.61448 -13.36415 -13.22234 -12.81117 -12.69092 -12.64062 -12.52402 -12.35118 -11.84838 -11.74925 -11.52733 -11.31371 -11.26414 -11.11178 -10.62243 -10.22931 -10.09527 -10.04513 -9.68520 -9.21660 -8.97826 -6.74066 -0.80379 0.10967 0.63448 0.72492 1.26027 1.40224 1.45963 1.59984 1.69855 2.06257 2.52520 2.75138 2.79586 2.94863 3.30843 3.47702 3.49519 3.75684 3.81655 3.87811 4.00046 4.01016 4.11038 4.22011 4.26298 4.30423 4.47799 4.52807 4.59124 4.62502 4.70550 4.73433 4.76757 4.82784 4.90475 5.04689 5.09995 5.13039 5.20320 5.32624 5.37703 5.65895 5.68357 5.96686 6.09111 6.12304 6.20105 6.46064 6.46860 6.65573 6.88933 7.40883 8.08519 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018545 B = 0.002525 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.501541 B =11085.915204 C =12236.585608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.050 3.950 3 Si 0.967 3.033 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.464 4.464 8 H 0.070 0.930 9 C 0.093 3.907 10 C -0.295 4.295 11 C 0.122 3.878 12 N -0.561 5.561 13 C 0.157 3.843 14 C -0.057 4.057 15 C -0.046 4.046 16 C -0.107 4.107 17 C 0.057 3.943 18 C 0.573 3.427 19 O -0.564 6.564 20 N -0.596 5.596 21 C 0.071 3.929 22 C 0.052 3.948 23 O -0.396 6.396 24 C 0.047 3.953 25 C 0.030 3.970 26 N -0.445 5.445 27 C 0.110 3.890 28 C -0.238 4.238 29 H 0.298 0.702 30 H 0.113 0.887 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.131 0.869 38 H 0.051 0.949 39 H 0.124 0.876 40 H 0.161 0.839 41 H 0.077 0.923 42 H 0.185 0.815 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.245 -9.067 7.783 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.167 4.167 3 Si 0.791 3.209 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.495 4.495 8 H 0.088 0.912 9 C 0.085 3.915 10 C -0.317 4.317 11 C -0.033 4.033 12 N -0.276 5.276 13 C 0.025 3.975 14 C -0.060 4.060 15 C -0.072 4.072 16 C -0.128 4.128 17 C -0.079 4.079 18 C 0.361 3.639 19 O -0.443 6.443 20 N -0.327 5.327 21 C -0.051 4.051 22 C -0.025 4.025 23 O -0.315 6.315 24 C -0.031 4.031 25 C -0.092 4.092 26 N -0.156 5.156 27 C -0.049 4.049 28 C -0.261 4.261 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.183 0.817 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.149 0.851 38 H 0.069 0.931 39 H 0.142 0.858 40 H 0.177 0.823 41 H 0.095 0.905 42 H 0.202 0.798 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.069 -9.918 8.070 19.012 hybrid contribution -0.891 1.513 -0.693 1.888 sum 13.178 -8.405 7.377 17.284 Atomic orbital electron populations 1.69615 1.09107 1.31948 1.35394 1.26839 0.95447 1.04252 0.90185 0.85480 0.79242 0.76329 0.79866 1.17773 1.20738 1.17716 1.19536 0.91658 0.95423 1.42882 0.91206 1.18069 0.93299 0.91397 0.88695 1.22164 0.97227 1.05333 1.06964 1.22432 0.90167 0.95034 0.95653 1.67420 1.39785 1.06018 1.14354 1.19333 0.90387 0.93143 0.94682 1.19918 0.93970 0.94769 0.97361 1.21866 0.92062 0.97831 0.95400 1.22104 1.02571 0.92744 0.95332 1.21135 0.90683 0.96341 0.99740 1.18002 0.85863 0.80874 0.79152 1.90742 1.17062 1.73089 1.63395 1.48094 1.13518 1.30053 1.41067 1.22600 0.97731 0.90125 0.94688 1.23143 0.82532 1.03974 0.92886 1.87933 1.21430 1.45372 1.76752 1.23168 0.98876 0.88472 0.92538 1.23939 0.80480 1.08983 0.95779 1.67387 1.04111 1.25458 1.18629 1.23318 1.01076 0.88566 0.91969 1.22138 0.92931 1.04415 1.06571 0.89115 0.86980 0.81685 0.82418 0.82310 0.89551 0.88446 0.92808 0.85127 0.93087 0.85826 0.82321 0.90510 0.79844 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -41.99 13.92 21.84 0.30 -41.69 16 2 C 0.05 2.44 5.49 85.30 0.47 2.91 16 3 Si 0.97 38.88 24.40 68.60 1.67 40.55 16 4 H -0.25 -9.46 6.69 99.48 0.67 -8.80 16 5 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.25 -10.46 6.58 99.48 0.65 -9.81 16 7 C -0.46 -23.41 9.67 23.52 0.23 -23.18 16 8 H 0.07 3.75 8.06 -2.91 -0.02 3.73 16 9 C 0.09 4.29 5.18 -21.12 -0.11 4.18 16 10 C -0.29 -12.56 7.07 22.88 0.16 -12.39 16 11 C 0.12 4.65 11.15 84.58 0.94 5.59 16 12 N -0.56 -21.58 9.47 -185.37 -1.76 -23.33 16 13 C 0.16 5.88 6.72 41.84 0.28 6.16 16 14 C -0.06 -1.77 5.90 -19.88 -0.12 -1.89 16 15 C -0.05 -1.26 9.68 22.66 0.22 -1.04 16 16 C -0.11 -2.75 9.61 22.58 0.22 -2.53 16 17 C 0.06 1.54 6.61 41.90 0.28 1.82 16 18 C 0.57 15.69 7.67 86.86 0.67 16.35 16 19 O -0.56 -17.77 15.85 -3.79 -0.06 -17.83 16 20 N -0.60 -13.60 3.01 -819.67 -2.47 -16.07 16 21 C 0.07 1.29 6.67 86.50 0.58 1.86 16 22 C 0.05 0.79 7.00 72.23 0.51 1.30 16 23 O -0.40 -7.57 10.74 -148.98 -1.60 -9.17 16 24 C 0.05 0.81 6.98 72.08 0.50 1.31 16 25 C 0.03 0.60 6.17 86.35 0.53 1.13 16 26 N -0.44 -11.42 6.06 -184.08 -1.11 -12.53 16 27 C 0.11 2.98 10.58 85.11 0.90 3.88 16 28 C -0.24 -9.67 9.25 23.08 0.21 -9.46 16 29 H 0.30 13.43 8.29 -92.70 -0.77 12.66 16 30 H 0.11 4.66 4.33 -2.91 -0.01 4.65 16 31 H 0.17 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.16 4.19 7.62 -2.91 -0.02 4.16 16 33 H 0.16 3.66 7.68 -2.91 -0.02 3.64 16 34 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.10 1.86 7.07 -2.39 -0.02 1.84 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.16 3.44 3.91 -75.60 -0.30 3.15 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.18 4.42 6.21 -2.91 -0.02 4.40 16 43 H 0.13 4.73 6.23 -2.91 -0.02 4.72 16 Total: -1.00 -59.36 351.55 2.13 -57.23 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.69 Total: 26.83 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 6.47 Total: -3.99 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -5.04 Total: -93.62 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.66 Total: -27.00 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 1.67 Total: 40.55 kcal Total: -59.36 2.13 -57.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242651557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.820 kcal (2) G-P(sol) polarization free energy of solvation -59.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds