Wall clock time and date at job start Tue Mar 31 2020 22:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30652 * 1 3 3 Si 1.86793 * 120.00033 * 2 1 4 4 H 1.48501 * 109.47243 * 270.00041 * 3 2 1 5 5 H 1.48506 * 109.46977 * 29.99540 * 3 2 1 6 6 H 1.48501 * 109.47488 * 149.99611 * 3 2 1 7 7 C 1.40226 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.40794 * 119.99796 * 0.02562 * 7 2 1 10 10 N 1.33702 * 119.94755 * 359.97293 * 9 7 2 11 11 C 1.31254 * 121.64833 * 180.02562 * 10 9 7 12 12 C 1.39093 * 121.34957 * 0.02562 * 11 10 9 13 13 C 1.38371 * 119.72840 * 359.74036 * 12 11 10 14 14 C 1.39742 * 118.46553 * 0.50426 * 13 12 11 15 15 C 1.47709 * 120.64927 * 179.78132 * 14 13 12 16 16 C 1.40101 * 120.47068 * 309.68848 * 15 14 13 17 17 C 1.38187 * 118.35798 * 179.75199 * 16 15 14 18 18 C 1.39523 * 119.21828 * 0.56097 * 17 16 15 19 19 C 1.48018 * 119.56364 * 179.70475 * 18 17 16 20 20 O 1.21540 * 119.99816 * 344.28237 * 19 18 17 21 21 N 1.34769 * 120.00187 * 164.28548 * 19 18 17 22 22 C 1.47149 * 120.98205 * 180.12496 * 21 19 18 23 23 C 1.53715 * 108.16507 * 129.42963 * 22 21 19 24 24 O 1.42973 * 109.14482 * 52.53562 * 23 22 21 25 25 C 1.42958 * 114.16678 * 297.29033 * 24 23 22 26 26 C 1.47153 * 120.98392 * 0.40566 * 21 19 18 27 27 N 1.32854 * 120.87552 * 359.42380 * 18 17 16 28 28 C 1.31271 * 121.80329 * 0.28443 * 27 18 17 29 29 H 0.96999 * 120.00511 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.32986 * 179.97438 * 11 10 9 31 31 H 1.08001 * 120.13058 * 180.02562 * 12 11 10 32 32 H 1.07999 * 120.76543 * 180.27316 * 13 12 11 33 33 H 1.07996 * 120.82473 * 0.02562 * 16 15 14 34 34 H 1.07998 * 120.39201 * 180.28513 * 17 16 15 35 35 H 1.09003 * 109.68488 * 249.20991 * 22 21 19 36 36 H 1.08995 * 109.68483 * 9.76613 * 22 21 19 37 37 H 1.08996 * 109.65763 * 292.57818 * 23 22 21 38 38 H 1.08998 * 109.49080 * 172.39564 * 23 22 21 39 39 H 1.08996 * 109.51357 * 302.65896 * 25 24 23 40 40 H 1.08998 * 109.55149 * 182.52999 * 25 24 23 41 41 H 1.09005 * 109.68075 * 350.23205 * 26 21 19 42 42 H 1.09002 * 109.68508 * 110.75427 * 26 21 19 43 43 H 1.07997 * 119.65828 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5380 1.4402 0.7001 7 6 2.0077 -1.2144 0.0005 8 1 3.0876 -1.2143 0.0010 9 6 1.3036 -2.4337 0.0005 10 7 -0.0334 -2.4324 0.0006 11 6 -0.7231 -3.5491 0.0011 12 6 -0.0928 -4.7890 0.0021 13 6 1.2893 -4.8561 -0.0028 14 6 2.0142 -3.6615 0.0021 15 6 3.4912 -3.6769 0.0021 16 6 4.1935 -4.4592 0.9281 17 6 5.5747 -4.4449 0.8856 18 6 6.2187 -3.6494 -0.0625 19 6 7.6979 -3.6233 -0.1105 20 8 8.3439 -4.0490 0.8268 21 7 8.3284 -3.1275 -1.1936 22 6 9.7977 -3.0936 -1.2653 23 6 10.2269 -3.7232 -2.6003 24 8 9.5247 -3.0825 -3.6682 25 6 8.1055 -3.2472 -3.6173 26 6 7.5677 -2.5983 -2.3367 27 7 5.5220 -2.9192 -0.9264 28 6 4.2093 -2.9093 -0.9232 29 1 -0.4851 0.8400 -0.0004 30 1 -1.8022 -3.5044 0.0015 31 1 -0.6798 -5.6956 0.0021 32 1 1.7960 -5.8099 -0.0065 33 1 3.6685 -5.0619 1.6543 34 1 6.1489 -5.0392 1.5810 35 1 10.1441 -2.0613 -1.2149 36 1 10.2190 -3.6635 -0.4372 37 1 9.9911 -4.7874 -2.5964 38 1 11.2998 -3.5885 -2.7376 39 1 7.8621 -4.3096 -3.6170 40 1 7.6515 -2.7699 -4.4857 41 1 6.5114 -2.8402 -2.2184 42 1 7.6928 -1.5169 -2.3920 43 1 3.6777 -2.3030 -1.6416 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242654439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:32 Heat of formation + Delta-G solvation = 12.195657 kcal Electronic energy + Delta-G solvation = -28805.024867 eV Core-core repulsion = 24815.952845 eV Total energy + Delta-G solvation = -3989.072023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.70194 -39.42917 -38.34325 -37.83311 -34.82290 -33.95346 -33.12498 -31.69201 -31.42345 -30.55248 -29.20354 -27.77543 -26.11174 -24.58825 -24.05181 -23.02201 -22.23108 -21.51956 -20.69458 -19.77039 -17.78914 -17.52593 -16.80391 -16.24111 -16.14619 -15.76808 -15.57213 -15.37257 -15.11947 -14.79890 -14.54182 -14.45472 -14.33152 -13.73446 -13.52496 -13.29396 -13.03197 -12.79468 -12.54397 -12.32877 -12.27835 -11.87934 -11.54198 -11.47641 -11.37316 -11.27472 -11.17414 -10.82871 -10.61476 -10.30002 -10.20219 -10.13467 -9.65271 -9.60448 -8.98586 -8.70881 -8.53592 -8.28949 -7.85656 -7.61608 -6.69880 -4.81153 0.93396 1.60139 2.44241 2.70119 2.88200 2.96293 2.99449 3.04427 3.05721 3.70536 3.75181 4.16457 4.30307 4.48996 4.64171 4.87024 4.93105 5.05403 5.16579 5.22274 5.32887 5.35224 5.38011 5.44097 5.54535 5.63274 5.65647 5.72827 5.85791 5.86957 6.02187 6.10244 6.23299 6.29449 6.39458 6.52239 6.59593 6.70245 6.82017 6.95148 7.02586 7.13226 7.29315 7.34558 7.46089 7.73855 7.94004 7.96269 8.27015 8.34207 8.61168 9.80670 9.99738 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003483 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.738304 B = 8038.030376 C = 9193.233120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.414 4.414 8 H 0.092 0.908 9 C 0.270 3.730 10 N -0.479 5.479 11 C 0.141 3.859 12 C -0.319 4.319 13 C -0.022 4.022 14 C -0.254 4.254 15 C 0.017 3.983 16 C -0.103 4.103 17 C -0.100 4.100 18 C 0.030 3.970 19 C 0.582 3.418 20 O -0.546 6.546 21 N -0.600 5.600 22 C 0.074 3.926 23 C 0.051 3.949 24 O -0.386 6.386 25 C 0.045 3.955 26 C 0.031 3.969 27 N -0.452 5.452 28 C 0.097 3.903 29 H 0.278 0.722 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.103 0.897 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.168 0.832 42 H 0.071 0.929 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.460 -4.440 -4.311 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.160 4.160 3 Si 0.727 3.273 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.443 4.443 8 H 0.110 0.890 9 C 0.147 3.853 10 N -0.190 5.190 11 C -0.029 4.029 12 C -0.342 4.342 13 C -0.046 4.046 14 C -0.260 4.260 15 C 0.014 3.986 16 C -0.128 4.128 17 C -0.121 4.121 18 C -0.105 4.105 19 C 0.371 3.629 20 O -0.423 6.423 21 N -0.333 5.333 22 C -0.048 4.048 23 C -0.027 4.027 24 O -0.304 6.304 25 C -0.032 4.032 26 C -0.091 4.091 27 N -0.163 5.163 28 C -0.064 4.064 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.184 0.816 42 H 0.089 0.911 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 10.821 -3.064 -4.529 12.124 hybrid contribution 0.130 -0.699 0.841 1.102 sum 10.951 -3.763 -3.688 12.153 Atomic orbital electron populations 1.70064 1.07392 1.28593 1.25789 1.26155 0.94932 1.01425 0.93444 0.86340 0.80707 0.80423 0.79793 1.18828 1.19774 1.18213 1.19854 0.94855 0.89373 1.40238 0.88973 1.18487 0.88040 0.90678 0.88069 1.68780 1.06895 1.26648 1.16651 1.22689 0.99026 0.88773 0.92451 1.21267 0.94518 0.98057 1.20387 1.20894 0.93852 0.95538 0.94365 1.19147 0.89716 0.94863 1.22254 1.19918 0.94497 0.92132 0.92012 1.21740 0.92984 0.99737 0.98366 1.21797 0.94777 0.97990 0.97510 1.20664 0.92870 0.99808 0.97184 1.18004 0.86481 0.76710 0.81694 1.90732 1.66799 1.48544 1.36241 1.47913 1.06254 1.61026 1.18094 1.22376 0.80851 1.02370 0.99239 1.23008 0.97255 0.96172 0.86264 1.87928 1.19034 1.75726 1.47711 1.23123 0.80922 1.00306 0.98844 1.23884 1.02826 0.98778 0.83611 1.67049 1.08996 1.18945 1.21343 1.23267 0.88191 0.97104 0.97801 0.91013 0.86045 0.88354 0.88347 0.84698 0.84483 0.90716 0.88283 0.92804 0.87923 0.93070 0.87732 0.81628 0.91062 0.81231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.93 11.46 55.56 0.64 -16.30 16 2 C 0.07 1.58 5.50 -17.31 -0.10 1.49 16 3 Si 0.90 17.33 29.56 -169.99 -5.03 12.30 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.41 -9.83 7.98 -37.87 -0.30 -10.13 16 8 H 0.09 2.08 5.24 -52.49 -0.28 1.80 16 9 C 0.27 6.52 6.56 -84.70 -0.56 5.97 16 10 N -0.48 -11.91 7.85 -10.90 -0.09 -11.99 16 11 C 0.14 3.06 11.17 -17.48 -0.20 2.86 16 12 C -0.32 -6.34 10.10 -39.22 -0.40 -6.74 16 13 C -0.02 -0.43 9.69 -38.97 -0.38 -0.81 16 14 C -0.25 -5.40 5.55 -104.08 -0.58 -5.98 16 15 C 0.02 0.33 5.04 -104.66 -0.53 -0.20 16 16 C -0.10 -1.72 9.70 -38.90 -0.38 -2.10 16 17 C -0.10 -1.62 9.60 -39.12 -0.38 -1.99 16 18 C 0.03 0.51 6.58 -82.94 -0.55 -0.04 16 19 C 0.58 9.75 7.66 -12.25 -0.09 9.66 16 20 O -0.55 -10.13 15.89 5.33 0.08 -10.05 16 21 N -0.60 -8.60 3.01 -173.06 -0.52 -9.13 16 22 C 0.07 0.88 6.66 -3.32 -0.02 0.86 16 23 C 0.05 0.51 7.00 37.53 0.26 0.78 16 24 O -0.39 -4.65 10.74 -35.23 -0.38 -5.02 16 25 C 0.05 0.51 6.99 37.31 0.26 0.77 16 26 C 0.03 0.41 6.18 -3.53 -0.02 0.39 16 27 N -0.45 -7.58 6.11 -9.44 -0.06 -7.64 16 28 C 0.10 1.72 8.74 -17.12 -0.15 1.57 16 29 H 0.28 6.10 8.29 -40.82 -0.34 5.77 16 30 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.14 2.03 7.71 -52.49 -0.40 1.62 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.19 7.08 -51.93 -0.37 0.82 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.17 2.35 3.92 -87.08 -0.34 2.01 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.17 3.00 7.24 -52.49 -0.38 2.62 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -28.05 357.22 -9.18 -37.23 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.13 Total: 8.86 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -4.09 Total: -3.65 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.03 Total: -45.06 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.29 Total: -15.07 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.05 -9.18 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242654439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.430 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds