Wall clock time and date at job start Tue Mar 31 2020 22:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30652 * 1 3 3 Si 1.86793 * 120.00033 * 2 1 4 4 H 1.48501 * 109.47243 * 270.00041 * 3 2 1 5 5 H 1.48506 * 109.46977 * 29.99540 * 3 2 1 6 6 H 1.48501 * 109.47488 * 149.99611 * 3 2 1 7 7 C 1.40226 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.40794 * 119.99796 * 0.02562 * 7 2 1 10 10 N 1.33702 * 119.94755 * 359.97293 * 9 7 2 11 11 C 1.31254 * 121.64833 * 180.02562 * 10 9 7 12 12 C 1.39093 * 121.34957 * 0.02562 * 11 10 9 13 13 C 1.38371 * 119.72840 * 359.74036 * 12 11 10 14 14 C 1.39742 * 118.46553 * 0.50426 * 13 12 11 15 15 C 1.47709 * 120.64927 * 179.78132 * 14 13 12 16 16 C 1.40101 * 120.47068 * 309.68848 * 15 14 13 17 17 C 1.38187 * 118.35798 * 179.75199 * 16 15 14 18 18 C 1.39523 * 119.21828 * 0.56097 * 17 16 15 19 19 C 1.48018 * 119.56364 * 179.70475 * 18 17 16 20 20 O 1.21540 * 119.99816 * 344.28237 * 19 18 17 21 21 N 1.34769 * 120.00187 * 164.28548 * 19 18 17 22 22 C 1.47149 * 120.98205 * 180.12496 * 21 19 18 23 23 C 1.53715 * 108.16507 * 129.42963 * 22 21 19 24 24 O 1.42973 * 109.14482 * 52.53562 * 23 22 21 25 25 C 1.42958 * 114.16678 * 297.29033 * 24 23 22 26 26 C 1.47153 * 120.98392 * 0.40566 * 21 19 18 27 27 N 1.32854 * 120.87552 * 359.42380 * 18 17 16 28 28 C 1.31271 * 121.80329 * 0.28443 * 27 18 17 29 29 H 0.96999 * 120.00511 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.32986 * 179.97438 * 11 10 9 31 31 H 1.08001 * 120.13058 * 180.02562 * 12 11 10 32 32 H 1.07999 * 120.76543 * 180.27316 * 13 12 11 33 33 H 1.07996 * 120.82473 * 0.02562 * 16 15 14 34 34 H 1.07998 * 120.39201 * 180.28513 * 17 16 15 35 35 H 1.09003 * 109.68488 * 249.20991 * 22 21 19 36 36 H 1.08995 * 109.68483 * 9.76613 * 22 21 19 37 37 H 1.08996 * 109.65763 * 292.57818 * 23 22 21 38 38 H 1.08998 * 109.49080 * 172.39564 * 23 22 21 39 39 H 1.08996 * 109.51357 * 302.65896 * 25 24 23 40 40 H 1.08998 * 109.55149 * 182.52999 * 25 24 23 41 41 H 1.09005 * 109.68075 * 350.23205 * 26 21 19 42 42 H 1.09002 * 109.68508 * 110.75427 * 26 21 19 43 43 H 1.07997 * 119.65828 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5380 1.4402 0.7001 7 6 2.0077 -1.2144 0.0005 8 1 3.0876 -1.2143 0.0010 9 6 1.3036 -2.4337 0.0005 10 7 -0.0334 -2.4324 0.0006 11 6 -0.7231 -3.5491 0.0011 12 6 -0.0928 -4.7890 0.0021 13 6 1.2893 -4.8561 -0.0028 14 6 2.0142 -3.6615 0.0021 15 6 3.4912 -3.6769 0.0021 16 6 4.1935 -4.4592 0.9281 17 6 5.5747 -4.4449 0.8856 18 6 6.2187 -3.6494 -0.0625 19 6 7.6979 -3.6233 -0.1105 20 8 8.3439 -4.0490 0.8268 21 7 8.3284 -3.1275 -1.1936 22 6 9.7977 -3.0936 -1.2653 23 6 10.2269 -3.7232 -2.6003 24 8 9.5247 -3.0825 -3.6682 25 6 8.1055 -3.2472 -3.6173 26 6 7.5677 -2.5983 -2.3367 27 7 5.5220 -2.9192 -0.9264 28 6 4.2093 -2.9093 -0.9232 29 1 -0.4851 0.8400 -0.0004 30 1 -1.8022 -3.5044 0.0015 31 1 -0.6798 -5.6956 0.0021 32 1 1.7960 -5.8099 -0.0065 33 1 3.6685 -5.0619 1.6543 34 1 6.1489 -5.0392 1.5810 35 1 10.1441 -2.0613 -1.2149 36 1 10.2190 -3.6635 -0.4372 37 1 9.9911 -4.7874 -2.5964 38 1 11.2998 -3.5885 -2.7376 39 1 7.8621 -4.3096 -3.6170 40 1 7.6515 -2.7699 -4.4857 41 1 6.5114 -2.8402 -2.2184 42 1 7.6928 -1.5169 -2.3920 43 1 3.6777 -2.3030 -1.6416 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242654439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:31 Heat of formation + Delta-G solvation = -3.256702 kcal Electronic energy + Delta-G solvation = -28805.694932 eV Core-core repulsion = 24815.952845 eV Total energy + Delta-G solvation = -3989.742087 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.96881 -40.71064 -39.74629 -39.12675 -35.96416 -35.62275 -34.54362 -33.07729 -32.43681 -32.15957 -30.65198 -28.90141 -27.74482 -25.85176 -25.15810 -24.37095 -23.49586 -23.06119 -22.15854 -20.93516 -19.45388 -18.71968 -18.05342 -17.70583 -17.27410 -16.89893 -16.79830 -16.77285 -16.16851 -16.06164 -15.97602 -15.89291 -15.62511 -15.04219 -14.74484 -14.56374 -14.48891 -14.11921 -14.04751 -13.93343 -13.35992 -13.21383 -12.91222 -12.89229 -12.80117 -12.60619 -12.35749 -12.17536 -11.86385 -11.76274 -11.47174 -11.27638 -11.25477 -11.02339 -10.42262 -9.98678 -9.92668 -9.63621 -9.53706 -9.21829 -8.36846 -6.53857 -0.45102 0.25489 0.84008 1.12078 1.39063 1.48757 1.52157 1.66356 1.75799 2.17070 2.77915 2.81704 2.84493 3.04853 3.60718 3.79467 3.84561 3.91802 4.01376 4.03055 4.10564 4.14158 4.24302 4.29201 4.31041 4.33873 4.49579 4.58780 4.70998 4.73886 4.79690 4.82112 4.89268 4.95162 5.00595 5.13074 5.16795 5.28781 5.38781 5.45466 5.64682 5.78482 5.87409 6.10156 6.10500 6.14746 6.25203 6.61574 6.67358 6.90697 6.97662 8.13802 8.35413 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003483 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.738304 B = 8038.030376 C = 9193.233120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.033 3.967 3 Si 0.968 3.032 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.445 4.445 8 H 0.094 0.906 9 C 0.243 3.757 10 N -0.519 5.519 11 C 0.117 3.883 12 C -0.310 4.310 13 C -0.029 4.029 14 C -0.253 4.253 15 C -0.003 4.003 16 C -0.091 4.091 17 C -0.098 4.098 18 C 0.027 3.973 19 C 0.576 3.424 20 O -0.569 6.569 21 N -0.597 5.597 22 C 0.070 3.930 23 C 0.053 3.947 24 O -0.396 6.396 25 C 0.049 3.951 26 C 0.030 3.970 27 N -0.445 5.445 28 C 0.095 3.905 29 H 0.282 0.718 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.132 0.868 39 H 0.052 0.948 40 H 0.124 0.876 41 H 0.158 0.842 42 H 0.072 0.928 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.295 -5.429 -4.776 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.475 4.475 8 H 0.112 0.888 9 C 0.120 3.880 10 N -0.231 5.231 11 C -0.050 4.050 12 C -0.333 4.333 13 C -0.053 4.053 14 C -0.258 4.258 15 C -0.006 4.006 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.108 4.108 19 C 0.365 3.635 20 O -0.448 6.448 21 N -0.329 5.329 22 C -0.052 4.052 23 C -0.024 4.024 24 O -0.314 6.314 25 C -0.028 4.028 26 C -0.092 4.092 27 N -0.156 5.156 28 C -0.065 4.065 29 H 0.093 0.907 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.150 0.850 39 H 0.071 0.929 40 H 0.141 0.859 41 H 0.173 0.827 42 H 0.090 0.910 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.643 -4.068 -5.029 14.201 hybrid contribution -0.328 -0.571 0.970 1.173 sum 12.314 -4.639 -4.059 13.771 Atomic orbital electron populations 1.70145 1.08709 1.29429 1.27868 1.26863 0.95502 1.04095 0.92645 0.85399 0.78989 0.76803 0.79923 1.18008 1.19247 1.18813 1.20035 0.95052 0.90087 1.42328 0.88775 1.18865 0.88350 0.92089 0.88681 1.68711 1.07703 1.28430 1.18230 1.23101 1.00017 0.89112 0.92771 1.21611 0.95029 0.98443 1.18202 1.21274 0.94001 0.96361 0.93684 1.19363 0.91080 0.94531 1.20845 1.19896 0.93518 0.93710 0.93494 1.21897 0.93161 0.98801 0.97779 1.21978 0.94627 0.97847 0.97465 1.20980 0.93385 0.99487 0.96986 1.18013 0.86305 0.77057 0.82126 1.90717 1.67060 1.49906 1.37156 1.48065 1.07582 1.59693 1.17569 1.22590 0.79137 1.03129 1.00321 1.23141 0.98664 0.95865 0.84720 1.87925 1.19203 1.76022 1.48256 1.23138 0.80852 1.00381 0.98396 1.23874 1.02236 0.98959 0.84101 1.67220 1.08335 1.18878 1.21205 1.23192 0.88580 0.96886 0.97832 0.90700 0.84388 0.85258 0.85222 0.82833 0.82823 0.89860 0.88498 0.92679 0.85001 0.92940 0.85860 0.82676 0.90977 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.22 11.46 21.87 0.25 -36.97 16 2 C 0.03 1.57 5.50 85.35 0.47 2.04 16 3 Si 0.97 36.33 29.56 68.60 2.03 38.35 16 4 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 5 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.45 -21.78 7.98 23.38 0.19 -21.60 16 8 H 0.09 4.37 5.24 -2.91 -0.02 4.36 16 9 C 0.24 12.06 6.56 40.38 0.26 12.32 16 10 N -0.52 -26.49 7.85 -188.40 -1.48 -27.97 16 11 C 0.12 5.12 11.17 84.98 0.95 6.07 16 12 C -0.31 -11.83 10.10 22.51 0.23 -11.60 16 13 C -0.03 -1.09 9.69 22.67 0.22 -0.87 16 14 C -0.25 -10.68 5.55 -19.52 -0.11 -10.79 16 15 C 0.00 -0.12 5.04 -19.89 -0.10 -0.22 16 16 C -0.09 -2.89 9.70 22.71 0.22 -2.67 16 17 C -0.10 -3.02 9.60 22.57 0.22 -2.80 16 18 C 0.03 0.89 6.58 41.89 0.28 1.17 16 19 C 0.58 18.58 7.66 86.84 0.67 19.24 16 20 O -0.57 -20.42 15.89 -3.84 -0.06 -20.49 16 21 N -0.60 -16.21 3.01 -819.74 -2.47 -18.68 16 22 C 0.07 1.52 6.66 86.50 0.58 2.09 16 23 C 0.05 0.94 7.00 72.22 0.51 1.45 16 24 O -0.40 -8.50 10.74 -148.98 -1.60 -10.10 16 25 C 0.05 1.01 6.99 72.08 0.50 1.51 16 26 C 0.03 0.75 6.18 86.36 0.53 1.28 16 27 N -0.45 -14.61 6.11 -183.79 -1.12 -15.73 16 28 C 0.09 3.37 8.74 85.21 0.75 4.12 16 29 H 0.28 12.85 8.29 -92.71 -0.77 12.08 16 30 H 0.14 5.29 8.06 -2.91 -0.02 5.27 16 31 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.15 4.21 7.71 -2.91 -0.02 4.18 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 2.16 7.08 -2.39 -0.02 2.14 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.16 4.24 3.92 -71.79 -0.28 3.96 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.17 5.97 7.24 -2.91 -0.02 5.95 16 Total: -1.00 -61.12 357.22 2.68 -58.44 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.78 Total: 32.41 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.35 Total: 0.73 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -4.82 Total: -99.35 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.66 Total: -30.58 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.35 kcal Total: -61.12 2.68 -58.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242654439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.187 kcal (2) G-P(sol) polarization free energy of solvation -61.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds