Wall clock time and date at job start Tue Mar 31 2020 23:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70449 * 124.59187 * 2 1 4 4 C 1.75510 * 92.44403 * 180.02562 * 3 2 1 5 5 C 1.32774 * 110.57509 * 359.73803 * 4 3 2 6 6 C 1.36010 * 124.59097 * 180.02562 * 2 1 3 7 7 C 1.47191 * 123.46099 * 359.97438 * 6 2 1 8 8 O 1.21633 * 119.99989 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99772 * 179.97438 * 7 6 2 10 10 C 1.46499 * 119.99665 * 179.72411 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.46900 * 110.99842 * 66.04719 * 13 12 11 15 15 C 1.46899 * 111.00128 * 190.00269 * 13 12 11 16 16 C 1.50703 * 109.47046 * 170.00323 * 15 13 12 17 17 O 1.21292 * 120.00219 * 359.97438 * 16 15 13 18 18 N 1.34779 * 120.00089 * 180.02562 * 16 15 13 19 19 C 1.37089 * 120.00260 * 179.97438 * 18 16 15 20 20 H 1.08008 * 120.00029 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00031 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00404 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99756 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47311 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46985 * 120.00578 * 23 21 19 26 26 H 1.48496 * 109.46954 * 239.99699 * 23 21 19 27 27 H 1.09001 * 109.47214 * 270.00020 * 1 2 3 28 28 H 1.08997 * 109.47051 * 30.00032 * 1 2 3 29 29 H 1.09000 * 109.47355 * 149.99965 * 1 2 3 30 30 H 1.08003 * 124.71007 * 179.97438 * 4 3 2 31 31 H 1.07998 * 123.45645 * 180.23154 * 5 4 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 33 33 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 34 34 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 35 35 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 36 36 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 37 37 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 38 38 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 39 39 H 1.08999 * 109.47291 * 60.00141 * 14 13 12 40 40 H 1.09003 * 109.47182 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47165 * 299.99892 * 14 13 12 42 42 H 1.08998 * 109.47091 * 289.99713 * 15 13 12 43 43 H 1.08996 * 109.47059 * 50.00124 * 15 13 12 44 44 H 0.97003 * 119.99243 * 359.97438 * 18 16 15 45 45 H 0.96997 * 120.00472 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9607 0.4693 -0.0008 5 6 3.6943 -0.8315 0.0047 6 6 2.2791 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0006 8 8 0.5246 -2.6553 -0.0006 9 7 2.5598 -3.5462 -0.0016 10 6 2.0122 -4.9050 0.0045 11 6 3.1595 -5.9172 0.0089 12 6 2.5876 -7.3362 0.0158 13 7 3.6892 -8.3081 0.0194 14 6 4.4533 -8.2331 1.2719 15 6 3.1903 -9.6703 -0.2121 16 6 4.3543 -10.5985 -0.4460 17 8 5.4878 -10.1677 -0.4226 18 7 4.1356 -11.9073 -0.6822 19 6 5.1943 -12.7517 -0.8955 20 1 6.2038 -12.3682 -0.8739 21 6 4.9688 -14.1010 -1.1385 22 7 3.7407 -14.5678 -1.1644 23 14 6.4116 -15.2516 -1.4284 24 1 7.6805 -14.4846 -1.3474 25 1 6.4107 -16.3170 -0.3939 26 1 6.2903 -15.8683 -2.7739 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 4.9538 0.8937 -0.0014 31 1 4.4576 -1.5955 0.0089 32 1 3.5202 -3.4103 -0.0019 33 1 1.3998 -5.0461 0.8952 34 1 1.3997 -5.0539 -0.8848 35 1 3.7718 -5.7761 -0.8818 36 1 3.7720 -5.7683 0.8982 37 1 1.9756 -7.4770 0.9067 38 1 1.9749 -7.4855 -0.8733 39 1 3.7944 -8.4486 2.1130 40 1 5.2628 -8.9626 1.2479 41 1 4.8699 -7.2322 1.3839 42 1 2.6286 -10.0046 0.6601 43 1 2.5401 -9.6752 -1.0869 44 1 3.2289 -12.2517 -0.7013 45 1 3.5833 -15.5097 -1.3344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265842859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:32 Heat of formation + Delta-G solvation = -41.030864 kcal Electronic energy + Delta-G solvation = -25516.652671 eV Core-core repulsion = 21660.716524 eV Total energy + Delta-G solvation = -3855.936146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25917 -38.68617 -37.44853 -36.82597 -35.29639 -33.85903 -32.36084 -31.64426 -31.20855 -28.13166 -27.63114 -26.25736 -24.85756 -23.87396 -22.55104 -21.87408 -20.94380 -19.53746 -19.12888 -17.83267 -17.67979 -17.03030 -16.29130 -16.09438 -15.82022 -15.31061 -15.10219 -14.66790 -14.60837 -14.42735 -13.94260 -13.85873 -13.77513 -13.59204 -13.35681 -13.29216 -13.02383 -12.50682 -12.29324 -12.13276 -11.98875 -11.85562 -11.69811 -11.47455 -11.47200 -11.25715 -11.23831 -10.92711 -10.71977 -10.33954 -10.22022 -10.02171 -9.48184 -9.39793 -9.18667 -8.85812 -8.44767 -7.97202 -7.84826 -6.41129 -3.81879 0.39723 1.05957 1.46794 1.57868 2.97716 3.07184 3.16571 3.27133 3.34243 3.91325 3.99642 4.24302 4.24939 4.46752 4.68373 4.82366 4.87181 4.98497 5.05300 5.09659 5.14493 5.25898 5.26571 5.41560 5.47709 5.52736 5.55214 5.60514 5.70744 5.74393 5.82291 5.86473 5.93780 5.98945 6.01487 6.09779 6.21857 6.29489 6.55728 7.22895 7.27408 7.39696 7.55953 7.96198 8.07405 8.62739 9.18978 9.55485 10.07346 10.76713 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034802 B = 0.001462 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.355995 B =19144.244430 C =19684.437019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.137 4.137 3 S 0.176 5.824 4 C -0.235 4.235 5 C -0.105 4.105 6 C -0.179 4.179 7 C 0.579 3.421 8 O -0.538 6.538 9 N -0.722 5.722 10 C 0.121 3.879 11 C -0.128 4.128 12 C 0.058 3.942 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.169 0.831 31 H 0.149 0.851 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.014 0.986 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 30.159 3.719 30.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.258 4.258 3 S 0.442 5.558 4 C -0.369 4.369 5 C -0.134 4.134 6 C -0.195 4.195 7 C 0.366 3.634 8 O -0.417 6.417 9 N -0.374 5.374 10 C -0.003 4.003 11 C -0.166 4.166 12 C -0.071 4.071 13 N -0.243 5.243 14 C -0.128 4.128 15 C -0.086 4.086 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.187 0.813 31 H 0.166 0.834 32 H 0.236 0.764 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.535 31.756 3.314 32.405 hybrid contribution 0.447 -2.604 0.506 2.690 sum -5.089 29.153 3.820 29.839 Atomic orbital electron populations 1.20660 0.86660 1.04484 1.03676 1.24576 1.01928 0.96851 1.02425 1.83132 0.95077 1.07420 1.70215 1.25419 1.02384 0.97233 1.11911 1.21232 0.94496 0.96466 1.01235 1.20145 0.92779 0.93681 1.12922 1.17542 0.86076 0.83696 0.76117 1.90737 1.14455 1.86124 1.50400 1.45859 1.10115 1.05996 1.75415 1.21357 0.96478 0.79826 1.02598 1.21781 0.97529 0.93545 1.03738 1.22001 0.92811 0.91261 1.01009 1.61547 1.22759 1.03921 1.36048 1.22576 0.99010 1.03089 0.88097 1.21865 0.96724 0.88777 1.01206 1.19745 0.89907 0.82976 0.84402 1.90478 1.23573 1.75921 1.56247 1.41878 1.09859 1.06140 1.62289 1.19748 0.89229 0.88708 1.45100 0.87860 1.25259 0.97628 0.97643 0.97447 1.69617 1.19384 1.15556 1.49773 0.85804 0.81036 0.79707 0.77811 1.19237 1.20807 1.20760 0.90145 0.91508 0.87651 0.81313 0.83353 0.76443 0.91386 0.91107 0.90140 0.91103 0.94861 0.90564 0.96795 0.88633 0.92129 0.93453 0.89360 0.77493 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 9.60 36.01 0.35 -0.43 16 2 C -0.14 -1.18 6.34 -35.11 -0.22 -1.41 16 3 S 0.18 1.09 22.97 -107.50 -2.47 -1.38 16 4 C -0.23 -1.39 11.12 28.86 0.32 -1.07 16 5 C -0.11 -0.73 9.91 -39.02 -0.39 -1.11 16 6 C -0.18 -1.66 5.98 -104.63 -0.63 -2.29 16 7 C 0.58 6.40 7.79 -12.62 -0.10 6.30 16 8 O -0.54 -7.47 14.06 5.25 0.07 -7.40 16 9 N -0.72 -6.53 5.53 -61.45 -0.34 -6.87 16 10 C 0.12 1.16 5.67 -4.04 -0.02 1.14 16 11 C -0.13 -1.27 5.25 -26.73 -0.14 -1.41 16 12 C 0.06 0.70 4.96 -3.82 -0.02 0.68 16 13 N -0.52 -8.43 4.50 -244.37 -1.10 -9.53 16 14 C 0.02 0.32 8.96 60.06 0.54 0.86 16 15 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 16 C 0.44 10.44 7.47 -10.98 -0.08 10.36 16 17 O -0.58 -15.43 13.91 5.55 0.08 -15.35 16 18 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 19 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 20 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 23 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.11 1.06 5.94 -51.93 -0.31 0.76 16 30 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 31 H 0.15 0.70 7.10 -52.49 -0.37 0.33 16 32 H 0.40 2.70 7.02 -40.82 -0.29 2.41 16 33 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 37 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.08 0.88 7.93 -51.93 -0.41 0.46 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.10 1.86 5.83 -51.93 -0.30 1.56 16 41 H 0.06 0.82 6.47 -51.93 -0.34 0.48 16 42 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -33.28 385.15 -9.38 -42.66 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.41 Total: 9.79 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -0.66 Total: 4.45 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.77 Total: -54.57 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.15 Total: -22.75 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.47 Total: -1.38 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.28 -9.38 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265842859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.626 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds