Wall clock time and date at job start Tue Mar 31 2020 23:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70449 * 124.59187 * 2 1 4 4 C 1.75510 * 92.44403 * 180.02562 * 3 2 1 5 5 C 1.32774 * 110.57509 * 359.73803 * 4 3 2 6 6 C 1.36010 * 124.59097 * 180.02562 * 2 1 3 7 7 C 1.47191 * 123.46099 * 359.97438 * 6 2 1 8 8 O 1.21633 * 119.99989 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99772 * 179.97438 * 7 6 2 10 10 C 1.46499 * 119.99665 * 179.72411 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.46900 * 110.99842 * 66.04719 * 13 12 11 15 15 C 1.46899 * 111.00128 * 190.00269 * 13 12 11 16 16 C 1.50703 * 109.47046 * 170.00323 * 15 13 12 17 17 O 1.21292 * 120.00219 * 359.97438 * 16 15 13 18 18 N 1.34779 * 120.00089 * 180.02562 * 16 15 13 19 19 C 1.37089 * 120.00260 * 179.97438 * 18 16 15 20 20 H 1.08008 * 120.00029 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00031 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00404 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99756 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47311 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46985 * 120.00578 * 23 21 19 26 26 H 1.48496 * 109.46954 * 239.99699 * 23 21 19 27 27 H 1.09001 * 109.47214 * 270.00020 * 1 2 3 28 28 H 1.08997 * 109.47051 * 30.00032 * 1 2 3 29 29 H 1.09000 * 109.47355 * 149.99965 * 1 2 3 30 30 H 1.08003 * 124.71007 * 179.97438 * 4 3 2 31 31 H 1.07998 * 123.45645 * 180.23154 * 5 4 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 33 33 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 34 34 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 35 35 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 36 36 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 37 37 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 38 38 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 39 39 H 1.08999 * 109.47291 * 60.00141 * 14 13 12 40 40 H 1.09003 * 109.47182 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47165 * 299.99892 * 14 13 12 42 42 H 1.08998 * 109.47091 * 289.99713 * 15 13 12 43 43 H 1.08996 * 109.47059 * 50.00124 * 15 13 12 44 44 H 0.97003 * 119.99243 * 359.97438 * 18 16 15 45 45 H 0.96997 * 120.00472 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9607 0.4693 -0.0008 5 6 3.6943 -0.8315 0.0047 6 6 2.2791 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0006 8 8 0.5246 -2.6553 -0.0006 9 7 2.5598 -3.5462 -0.0016 10 6 2.0122 -4.9050 0.0045 11 6 3.1595 -5.9172 0.0089 12 6 2.5876 -7.3362 0.0158 13 7 3.6892 -8.3081 0.0194 14 6 4.4533 -8.2331 1.2719 15 6 3.1903 -9.6703 -0.2121 16 6 4.3543 -10.5985 -0.4460 17 8 5.4878 -10.1677 -0.4226 18 7 4.1356 -11.9073 -0.6822 19 6 5.1943 -12.7517 -0.8955 20 1 6.2038 -12.3682 -0.8739 21 6 4.9688 -14.1010 -1.1385 22 7 3.7407 -14.5678 -1.1644 23 14 6.4116 -15.2516 -1.4284 24 1 7.6805 -14.4846 -1.3474 25 1 6.4107 -16.3170 -0.3939 26 1 6.2903 -15.8683 -2.7739 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 4.9538 0.8937 -0.0014 31 1 4.4576 -1.5955 0.0089 32 1 3.5202 -3.4103 -0.0019 33 1 1.3998 -5.0461 0.8952 34 1 1.3997 -5.0539 -0.8848 35 1 3.7718 -5.7761 -0.8818 36 1 3.7720 -5.7683 0.8982 37 1 1.9756 -7.4770 0.9067 38 1 1.9749 -7.4855 -0.8733 39 1 3.7944 -8.4486 2.1130 40 1 5.2628 -8.9626 1.2479 41 1 4.8699 -7.2322 1.3839 42 1 2.6286 -10.0046 0.6601 43 1 2.5401 -9.6752 -1.0869 44 1 3.2289 -12.2517 -0.7013 45 1 3.5833 -15.5097 -1.3344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265842859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:31 Heat of formation + Delta-G solvation = -65.135205 kcal Electronic energy + Delta-G solvation = -25517.697913 eV Core-core repulsion = 21660.716524 eV Total energy + Delta-G solvation = -3856.981389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02837 -40.36503 -38.39608 -37.83331 -36.31347 -35.78791 -33.28465 -32.99095 -32.50075 -29.44870 -28.53975 -27.31404 -26.48023 -24.80427 -23.47845 -22.57192 -21.91834 -20.96057 -20.25333 -19.83716 -18.24628 -17.86167 -17.63254 -16.98827 -16.82801 -16.54958 -16.46721 -16.23478 -15.75423 -15.52758 -15.15196 -14.98870 -14.88766 -14.47767 -14.41161 -14.27550 -13.74123 -13.60821 -13.47616 -13.32744 -13.04307 -13.01674 -12.79911 -12.71381 -12.56782 -12.49375 -12.37350 -12.31280 -12.10492 -11.97768 -11.63868 -11.45089 -10.84143 -10.26507 -10.18209 -9.98488 -9.72721 -9.38539 -9.18710 -8.45356 -5.93873 -0.19941 0.54827 0.96611 1.00756 1.37308 1.42429 1.56597 2.07274 2.19976 2.31166 2.32946 2.83544 3.21675 3.44379 3.71936 3.83077 3.97135 4.03858 4.14242 4.18961 4.32728 4.39778 4.43498 4.50367 4.56232 4.61574 4.63303 4.64573 4.65263 4.76305 4.80431 4.97616 5.04929 5.10054 5.19243 5.22493 5.30673 5.31635 5.42685 5.46404 5.89922 6.08815 6.24118 6.52501 6.62429 7.14733 7.19944 7.58471 8.14345 8.72310 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034802 B = 0.001462 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.355995 B =19144.244430 C =19684.437019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.161 4.161 3 S 0.214 5.786 4 C -0.232 4.232 5 C -0.115 4.115 6 C -0.199 4.199 7 C 0.573 3.427 8 O -0.576 6.576 9 N -0.713 5.713 10 C 0.129 3.871 11 C -0.114 4.114 12 C 0.058 3.942 13 N -0.537 5.537 14 C 0.025 3.975 15 C 0.056 3.944 16 C 0.442 3.558 17 O -0.614 6.614 18 N -0.576 5.576 19 C -0.331 4.331 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.272 1.272 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.196 0.804 31 H 0.168 0.832 32 H 0.413 0.587 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.027 0.973 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.395 0.605 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 31.538 3.879 32.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.282 4.282 3 S 0.480 5.520 4 C -0.367 4.367 5 C -0.143 4.143 6 C -0.217 4.217 7 C 0.360 3.640 8 O -0.458 6.458 9 N -0.365 5.365 10 C 0.005 3.995 11 C -0.152 4.152 12 C -0.070 4.070 13 N -0.261 5.261 14 C -0.123 4.123 15 C -0.075 4.075 16 C 0.229 3.771 17 O -0.500 6.500 18 N -0.214 5.214 19 C -0.461 4.461 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.197 1.197 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.213 0.787 31 H 0.186 0.814 32 H 0.250 0.750 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.229 0.771 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.107 33.149 3.477 33.720 hybrid contribution 0.313 -2.911 0.469 2.965 sum -4.795 30.238 3.946 30.869 Atomic orbital electron populations 1.20595 0.86912 1.04183 1.03584 1.24828 1.02426 0.98176 1.02746 1.82983 0.94475 1.05697 1.68890 1.25815 1.03483 0.96941 1.10459 1.21393 0.93659 0.97546 1.01725 1.20239 0.94198 0.92832 1.14383 1.17914 0.85765 0.84750 0.75529 1.90716 1.16004 1.86759 1.52284 1.45771 1.10681 1.05437 1.74589 1.21211 0.96187 0.80038 1.02102 1.21624 0.97369 0.92240 1.03940 1.22083 0.91840 0.91072 1.01994 1.61510 1.24548 1.03601 1.36483 1.22466 0.98106 1.03184 0.88570 1.21745 0.94240 0.88578 1.02905 1.20789 0.91123 0.82937 0.82251 1.90457 1.25749 1.76546 1.57200 1.41953 1.09443 1.06818 1.63138 1.19700 0.89083 0.89980 1.47333 0.90267 1.26031 1.00288 0.98455 0.96569 1.69677 1.20723 1.16212 1.49661 0.84868 0.77612 0.77606 0.78224 1.19760 1.19680 1.19688 0.90155 0.89649 0.90102 0.78666 0.81444 0.75011 0.91777 0.91814 0.90438 0.90352 0.93626 0.89807 0.95435 0.92794 0.89762 0.91599 0.87294 0.77080 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.60 71.24 0.68 -0.85 16 2 C -0.16 -2.67 6.34 25.17 0.16 -2.51 16 3 S 0.21 2.23 22.97 -56.49 -1.30 0.93 16 4 C -0.23 -2.14 11.12 66.64 0.74 -1.40 16 5 C -0.11 -1.37 9.91 22.67 0.22 -1.14 16 6 C -0.20 -3.57 5.98 -19.87 -0.12 -3.69 16 7 C 0.57 12.60 7.79 86.60 0.67 13.27 16 8 O -0.58 -16.46 14.06 -4.14 -0.06 -16.52 16 9 N -0.71 -12.16 5.53 -466.58 -2.58 -14.74 16 10 C 0.13 2.31 5.67 86.38 0.49 2.80 16 11 C -0.11 -2.03 5.25 30.59 0.16 -1.86 16 12 C 0.06 1.28 4.96 86.30 0.43 1.71 16 13 N -0.54 -16.67 4.50 -927.05 -4.17 -20.84 16 14 C 0.02 0.75 8.96 127.69 1.14 1.90 16 15 C 0.06 1.95 5.45 85.56 0.47 2.41 16 16 C 0.44 20.99 7.47 87.66 0.66 21.65 16 17 O -0.61 -33.61 13.91 -3.07 -0.04 -33.65 16 18 N -0.58 -29.66 5.29 -306.98 -1.62 -31.28 16 19 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.92 -49.93 13.05 21.66 0.28 -49.64 16 23 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.74 5.94 -2.39 -0.01 1.72 16 30 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 31 H 0.17 1.18 7.10 -2.91 -0.02 1.16 16 32 H 0.41 4.87 7.02 -92.71 -0.65 4.22 16 33 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.30 6.55 -2.38 -0.02 1.29 16 37 H 0.05 0.92 8.12 -2.39 -0.02 0.90 16 38 H 0.08 1.74 7.93 -2.38 -0.02 1.72 16 39 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 2.12 5.83 -2.39 -0.01 2.11 16 41 H 0.08 2.12 6.47 -2.39 -0.02 2.10 16 42 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 43 H 0.11 3.31 7.93 -2.39 -0.02 3.29 16 44 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 45 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -73.60 385.15 -0.82 -74.42 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.35 Total: 32.31 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.99 Total: 13.95 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -8.09 Total: -116.51 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.10 Total: -50.17 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.30 Total: 0.93 kcal Total: -73.60 -0.82 -74.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265842859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.289 kcal (2) G-P(sol) polarization free energy of solvation -73.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds