Wall clock time and date at job start Tue Mar 31 2020 23:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33820 * 124.52170 * 2 1 4 4 C 1.37477 * 115.09995 * 179.97438 * 3 2 1 5 5 C 1.36653 * 113.29731 * 359.97438 * 4 3 2 6 6 C 1.46575 * 125.45735 * 180.26523 * 5 4 3 7 7 O 1.21697 * 120.00168 * 359.72040 * 6 5 4 8 8 N 1.34778 * 119.99949 * 179.71779 * 6 5 4 9 9 C 1.46497 * 120.00222 * 179.97438 * 8 6 5 10 10 C 1.50708 * 109.47373 * 179.97438 * 9 8 6 11 11 O 1.21273 * 119.99721 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99638 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99522 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47090 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47325 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47014 * 54.99686 * 15 14 13 17 17 C 1.52998 * 109.47513 * 175.00299 * 15 14 13 18 18 N 1.46506 * 109.47049 * 295.00176 * 15 14 13 19 19 C 1.36941 * 119.99965 * 154.99608 * 18 15 14 20 20 H 1.07996 * 120.00024 * 0.02562 * 19 18 15 21 21 C 1.38811 * 119.99668 * 179.97438 * 19 18 15 22 22 N 1.31621 * 120.00209 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99639 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46951 * 90.00488 * 23 21 19 25 25 H 1.48501 * 109.47058 * 210.00047 * 23 21 19 26 26 H 1.48501 * 109.47215 * 330.00263 * 23 21 19 27 27 S 1.70614 * 124.52091 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 300.02247 * 1 2 3 30 30 H 1.09002 * 109.46816 * 60.01466 * 1 2 3 31 31 H 1.07995 * 122.45037 * 359.93942 * 3 2 1 32 32 H 1.07990 * 123.35307 * 179.97438 * 4 3 2 33 33 H 0.97005 * 120.00165 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.47224 * 300.00200 * 9 8 6 35 35 H 1.09006 * 109.47235 * 60.00336 * 9 8 6 36 36 H 0.96996 * 120.00304 * 0.02562 * 12 10 9 37 37 H 1.09004 * 109.47193 * 300.00279 * 13 12 10 38 38 H 1.09006 * 109.47152 * 60.00349 * 13 12 10 39 39 H 1.09004 * 109.47418 * 300.00249 * 14 13 12 40 40 H 1.09006 * 109.47207 * 60.00487 * 14 13 12 41 41 H 1.08997 * 109.47285 * 60.00049 * 17 15 14 42 42 H 1.09001 * 109.47050 * 179.97438 * 17 15 14 43 43 H 1.09000 * 109.46975 * 300.00077 * 17 15 14 44 44 H 0.97003 * 119.99882 * 334.99667 * 18 15 14 45 45 H 0.97005 * 119.99475 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3123 -0.9883 0.0079 7 8 6.2658 -0.2321 0.0076 8 7 5.5096 -2.3215 0.0140 9 6 6.8718 -2.8605 0.0198 10 6 6.8163 -4.3665 0.0266 11 8 5.7444 -4.9337 0.0262 12 7 7.9579 -5.0828 0.0321 13 6 7.9039 -6.5469 0.0382 14 6 9.3265 -7.1096 0.0431 15 6 9.2702 -8.6386 0.0488 16 1 8.6693 -8.9832 -0.7928 17 6 10.6876 -9.2017 -0.0720 18 7 8.6665 -9.1003 1.3013 19 6 8.0453 -10.3197 1.3533 20 1 8.0009 -10.9411 0.4711 21 6 7.4738 -10.7573 2.5401 22 7 7.5284 -10.0001 3.6154 23 14 6.6271 -12.4209 2.6112 24 1 7.6143 -13.4629 2.9920 25 1 5.5377 -12.3792 3.6196 26 1 6.0562 -12.7432 1.2788 27 16 2.4739 -1.4057 0.0006 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5136 -0.8901 31 1 1.8430 2.0964 -0.0010 32 1 4.3550 1.6702 0.0002 33 1 4.7496 -2.9243 0.0139 34 1 7.4010 -2.5201 -0.8703 35 1 7.3965 -2.5126 0.9097 36 1 8.8152 -4.6291 0.0321 37 1 7.3750 -6.8872 0.9285 38 1 7.3789 -6.8948 -0.8515 39 1 9.8550 -6.7693 -0.8475 40 1 9.8519 -6.7618 0.9326 41 1 11.2884 -8.8572 0.7696 42 1 10.6474 -10.2910 -0.0675 43 1 11.1368 -8.8582 -1.0039 44 1 8.7067 -8.5423 2.0937 45 1 7.1286 -10.3059 4.4446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267154248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:39 Heat of formation + Delta-G solvation = -41.279255 kcal Electronic energy + Delta-G solvation = -25536.765148 eV Core-core repulsion = 21680.818231 eV Total energy + Delta-G solvation = -3855.946917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35027 -39.37229 -38.03364 -36.67962 -34.78922 -34.40456 -32.49970 -32.29342 -29.96949 -28.81546 -28.01467 -26.61564 -24.01890 -23.76292 -22.65785 -21.62016 -20.80088 -20.00941 -19.50418 -18.42499 -17.28927 -16.98863 -16.51321 -16.16742 -16.00472 -15.54821 -15.27034 -14.87188 -14.75259 -14.37882 -14.04937 -13.99800 -13.51157 -13.49892 -13.35251 -13.26418 -12.75364 -12.66661 -12.52091 -12.31224 -12.20114 -12.07081 -11.57761 -11.24419 -11.12954 -10.95005 -10.78031 -10.66170 -10.42365 -10.33545 -10.08660 -9.84175 -9.64935 -9.53799 -9.01648 -8.97812 -8.93809 -8.88814 -6.96446 -5.76041 -3.04849 0.14832 1.09866 1.51729 2.02431 2.51663 2.59220 2.92061 3.32234 3.44328 3.49729 3.51325 4.33851 4.46246 4.59947 4.63969 4.75177 4.94627 5.04292 5.06427 5.11000 5.19431 5.23824 5.35931 5.45800 5.54127 5.62003 5.64178 5.78521 5.84108 5.93345 5.99994 6.03489 6.14241 6.29388 6.35600 6.40337 6.58151 6.66330 6.84099 7.04240 7.13623 7.43907 7.71151 7.83027 8.12415 8.42274 9.53714 10.10029 10.44537 11.46523 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.001970 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.286567 B =14208.185560 C =15803.250283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.194 4.194 3 C -0.161 4.161 4 C -0.047 4.047 5 C -0.275 4.275 6 C 0.596 3.404 7 O -0.533 6.533 8 N -0.714 5.714 9 C 0.101 3.899 10 C 0.503 3.497 11 O -0.534 6.534 12 N -0.721 5.721 13 C 0.121 3.879 14 C -0.133 4.133 15 C 0.174 3.826 16 H 0.049 0.951 17 C -0.163 4.163 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 S 0.216 5.784 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.411 0.589 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.400 0.600 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 23.167 -9.686 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.314 4.314 3 C -0.191 4.191 4 C -0.080 4.080 5 C -0.395 4.395 6 C 0.382 3.618 7 O -0.411 6.411 8 N -0.369 5.369 9 C -0.026 4.026 10 C 0.288 3.712 11 O -0.411 6.411 12 N -0.372 5.372 13 C -0.001 4.001 14 C -0.172 4.172 15 C 0.063 3.937 16 H 0.067 0.933 17 C -0.224 4.224 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 S 0.484 5.516 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.249 0.751 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.163 21.506 -9.715 24.971 hybrid contribution 0.003 0.694 0.450 0.827 sum -8.161 22.200 -9.265 25.402 Atomic orbital electron populations 1.20415 0.87287 1.03392 1.03441 1.24346 1.01744 0.97962 1.07356 1.19936 0.92583 0.99688 1.06933 1.20735 0.96206 0.95017 0.96089 1.24465 0.96733 0.98234 1.20117 1.16866 0.87061 0.81674 0.76192 1.90830 1.41806 1.58033 1.50455 1.45558 1.09078 1.06700 1.75578 1.21114 0.85153 0.91248 1.05131 1.20380 0.84818 0.89092 0.76914 1.90737 1.28884 1.72005 1.49501 1.46011 1.08085 1.08531 1.74532 1.21525 0.98374 0.76447 1.03766 1.22069 0.95102 0.98238 1.01747 1.20157 0.92788 0.89536 0.91170 0.93268 1.22424 0.98966 1.01775 0.99196 1.42456 1.66255 1.20273 1.07570 1.19218 1.27684 0.94329 0.95688 0.91204 1.24731 1.01695 0.98557 0.95940 1.69656 1.50304 1.37336 1.00783 0.86216 0.79003 0.83978 0.77151 1.21823 1.21813 1.20770 1.83342 0.93972 1.06975 1.67356 0.91088 0.90101 0.90134 0.83759 0.82904 0.75108 0.88071 0.87960 0.76608 0.89474 0.91596 0.91818 0.91485 0.93508 0.92711 0.94555 0.78298 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.33 36.01 0.37 -0.05 16 2 C -0.19 -1.46 6.28 -35.86 -0.23 -1.69 16 3 C -0.16 -1.23 10.00 -41.41 -0.41 -1.64 16 4 C -0.05 -0.44 10.01 -40.43 -0.40 -0.84 16 5 C -0.28 -2.95 6.45 -36.79 -0.24 -3.18 16 6 C 0.60 7.45 7.78 -12.90 -0.10 7.35 16 7 O -0.53 -7.90 16.84 5.19 0.09 -7.81 16 8 N -0.71 -8.41 5.52 -62.83 -0.35 -8.76 16 9 C 0.10 1.07 6.15 -5.19 -0.03 1.04 16 10 C 0.50 6.70 7.90 -10.98 -0.09 6.61 16 11 O -0.53 -9.28 15.67 5.56 0.09 -9.20 16 12 N -0.72 -8.69 5.56 -60.29 -0.33 -9.02 16 13 C 0.12 1.88 5.56 -4.04 -0.02 1.86 16 14 C -0.13 -1.91 4.87 -26.73 -0.13 -2.04 16 15 C 0.17 3.22 2.89 -67.93 -0.20 3.02 16 16 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 17 C -0.16 -2.78 9.49 37.16 0.35 -2.42 16 18 N -0.72 -17.33 4.57 -53.42 -0.24 -17.57 16 19 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 23 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 S 0.22 1.90 22.08 -107.50 -2.37 -0.47 16 28 H 0.07 0.32 8.11 -51.93 -0.42 -0.10 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.41 4.90 6.55 -40.82 -0.27 4.63 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.40 3.44 8.47 -40.82 -0.35 3.09 16 37 H 0.09 1.72 7.75 -51.93 -0.40 1.31 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 397.76 15.07 5.99 5.99 Total: -1.00 -34.19 397.76 -9.60 -43.78 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -6.79 Total: 12.02 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.37 Total: 0.90 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.20 Total: -62.63 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.17 Total: -17.01 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.37 Total: -0.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.19 -9.60 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267154248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.501 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds