Wall clock time and date at job start Tue Mar 31 2020 23:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70445 * 124.58942 * 2 1 4 4 C 1.75502 * 92.44408 * 179.73438 * 3 2 1 5 5 C 1.32775 * 110.57712 * 0.02562 * 4 3 2 6 6 C 1.36004 * 124.58936 * 179.69800 * 2 1 3 7 7 C 1.47187 * 123.46426 * 0.23026 * 6 2 1 8 8 O 1.21639 * 119.99824 * 319.48496 * 7 6 2 9 9 N 1.34774 * 120.00205 * 139.48122 * 7 6 2 10 10 C 1.46498 * 120.00263 * 4.66176 * 9 7 6 11 11 C 1.46501 * 120.00399 * 184.66051 * 9 7 6 12 12 C 1.53009 * 109.47074 * 90.00088 * 11 9 7 13 13 N 1.46896 * 109.47012 * 180.02562 * 12 11 9 14 14 C 1.46902 * 111.00486 * 66.04748 * 13 12 11 15 15 C 1.46898 * 110.99649 * 189.99890 * 13 12 11 16 16 C 1.50706 * 109.47225 * 169.99671 * 15 13 12 17 17 O 1.21296 * 119.99791 * 0.02562 * 16 15 13 18 18 N 1.34771 * 120.00121 * 179.97438 * 16 15 13 19 19 C 1.37099 * 119.99810 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00296 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99721 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00268 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99927 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46854 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47187 * 119.99614 * 23 21 19 26 26 H 1.48497 * 109.46904 * 239.99844 * 23 21 19 27 27 H 1.08995 * 109.46996 * 0.02846 * 1 2 3 28 28 H 1.09007 * 109.46741 * 120.02219 * 1 2 3 29 29 H 1.09000 * 109.47321 * 240.02404 * 1 2 3 30 30 H 1.08001 * 124.71346 * 179.97438 * 4 3 2 31 31 H 1.08004 * 123.46285 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47208 * 84.37311 * 10 9 7 33 33 H 1.08992 * 109.47788 * 204.37889 * 10 9 7 34 34 H 1.09000 * 109.46794 * 324.38301 * 10 9 7 35 35 H 1.09000 * 109.47792 * 210.00083 * 11 9 7 36 36 H 1.08998 * 109.47023 * 330.00370 * 11 9 7 37 37 H 1.09009 * 109.46689 * 300.00439 * 12 11 9 38 38 H 1.08998 * 109.46965 * 60.00247 * 12 11 9 39 39 H 1.09000 * 109.47142 * 59.99333 * 14 13 12 40 40 H 1.08994 * 109.47095 * 180.02562 * 14 13 12 41 41 H 1.09006 * 109.46619 * 300.00298 * 14 13 12 42 42 H 1.08997 * 109.47190 * 289.99885 * 15 13 12 43 43 H 1.09004 * 109.47569 * 49.99920 * 15 13 12 44 44 H 0.96997 * 120.00038 * 0.02562 * 18 16 15 45 45 H 0.97005 * 119.99874 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4694 0.0081 5 6 3.6943 -0.8314 0.0100 6 6 2.2791 -1.1196 0.0059 7 6 1.7290 -2.4848 0.0082 8 8 0.7567 -2.7476 0.6901 9 7 2.3026 -3.4438 -0.7454 10 6 3.5327 -3.1550 -1.4867 11 6 1.6961 -4.7751 -0.8232 12 6 0.7016 -4.8153 -1.9852 13 7 0.0930 -6.1500 -2.0628 14 6 -0.7383 -6.4192 -0.8819 15 6 -0.6845 -6.3029 -3.2998 16 6 -1.0863 -7.7459 -3.4655 17 8 -0.7577 -8.5662 -2.6346 18 7 -1.8116 -8.1248 -4.5364 19 6 -2.1775 -9.4374 -4.6868 20 1 -1.8849 -10.1678 -3.9470 21 6 -2.9248 -9.8281 -5.7912 22 7 -3.2812 -8.9394 -6.6912 23 14 -3.4240 -11.6166 -5.9959 24 1 -2.9023 -12.4099 -4.8540 25 1 -4.9052 -11.7160 -6.0325 26 1 -2.8609 -12.1457 -7.2640 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5142 -0.8899 29 1 -0.3634 -0.5135 0.8902 30 1 4.9537 0.8938 0.0104 31 1 4.4576 -1.5955 0.0152 32 1 4.3925 -3.2891 -0.8304 33 1 3.6138 -3.8344 -2.3351 34 1 3.5072 -2.1262 -1.8462 35 1 2.4748 -5.5203 -0.9855 36 1 1.1746 -4.9917 0.1091 37 1 -0.0772 -4.0700 -1.8228 38 1 1.2231 -4.5987 -2.9175 39 1 -1.5330 -5.6757 -0.8199 40 1 -1.1763 -7.4138 -0.9650 41 1 -0.1219 -6.3677 0.0156 42 1 -1.5779 -5.6808 -3.2466 43 1 -0.0774 -5.9948 -4.1511 44 1 -2.0746 -7.4688 -5.2007 45 1 -3.8033 -9.2121 -7.4619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268237774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:35 Heat of formation + Delta-G solvation = -45.969892 kcal Electronic energy + Delta-G solvation = -26641.058817 eV Core-core repulsion = 22784.908499 eV Total energy + Delta-G solvation = -3856.150319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31214 -40.37038 -38.41688 -37.76112 -36.54411 -35.82070 -33.28709 -32.96808 -31.36961 -29.26559 -28.36709 -27.69151 -26.82622 -25.69841 -24.23752 -22.55389 -21.57051 -21.01034 -19.89728 -19.72577 -18.23972 -17.87814 -17.50689 -17.40596 -16.68348 -16.63006 -16.29299 -16.16810 -15.65725 -15.58389 -15.12095 -14.89227 -14.79490 -14.52647 -14.20894 -14.02308 -13.89172 -13.78551 -13.50037 -13.46336 -13.31389 -13.18428 -13.02503 -12.75044 -12.62738 -12.56084 -12.55103 -12.39527 -12.11288 -11.94451 -11.83366 -11.46785 -10.98070 -10.34374 -10.00249 -9.83631 -9.66942 -9.34684 -9.30728 -8.46406 -5.94909 -0.14802 0.56796 0.95132 1.10847 1.36580 1.41752 1.56086 1.83908 2.04595 2.14160 2.29671 2.83248 3.20074 3.39656 3.61782 3.71841 3.91716 4.06042 4.14906 4.21022 4.30336 4.34066 4.38218 4.44157 4.49306 4.52567 4.55283 4.57145 4.61489 4.71652 4.75914 4.87730 4.92574 4.98104 5.02843 5.13408 5.15267 5.32287 5.41578 5.44819 5.82093 6.01471 6.11414 6.31539 6.60686 7.07367 7.13250 7.56212 8.12024 8.71291 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.001872 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.700143 B =14952.164959 C =15167.142206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.175 4.175 3 S 0.215 5.785 4 C -0.228 4.228 5 C -0.115 4.115 6 C -0.189 4.189 7 C 0.573 3.427 8 O -0.578 6.578 9 N -0.605 5.605 10 C 0.069 3.931 11 C 0.124 3.876 12 C 0.052 3.948 13 N -0.527 5.527 14 C 0.029 3.971 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.612 6.612 18 N -0.574 5.574 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.200 0.800 31 H 0.170 0.830 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.022 0.978 38 H 0.092 0.908 39 H 0.019 0.981 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.114 0.886 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.503 24.999 9.329 31.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.295 4.295 3 S 0.481 5.519 4 C -0.362 4.362 5 C -0.143 4.143 6 C -0.206 4.206 7 C 0.361 3.639 8 O -0.458 6.458 9 N -0.337 5.337 10 C -0.072 4.072 11 C 0.001 3.999 12 C -0.077 4.077 13 N -0.251 5.251 14 C -0.119 4.119 15 C -0.073 4.073 16 C 0.230 3.770 17 O -0.498 6.498 18 N -0.212 5.212 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.195 1.195 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.217 0.783 31 H 0.188 0.812 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.110 0.890 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.229 0.771 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.225 25.494 10.035 31.841 hybrid contribution -1.151 -1.775 -0.494 2.173 sum 15.073 23.718 9.541 29.678 Atomic orbital electron populations 1.20383 0.87459 1.03575 1.03001 1.24654 1.01985 0.98354 1.04483 1.82949 0.94514 1.05412 1.69044 1.25831 1.03426 0.96666 1.10303 1.21482 0.93281 0.97510 1.02009 1.20151 0.94693 0.92347 1.13448 1.18150 0.82221 0.84821 0.78665 1.90770 1.29024 1.82626 1.43413 1.47775 1.27284 1.11308 1.47308 1.22317 0.84576 1.03401 0.96951 1.21338 0.97014 0.83345 0.98228 1.22429 0.96997 0.87867 1.00433 1.61494 1.34246 1.27925 1.01477 1.22413 0.95727 1.00904 0.92832 1.21748 0.98146 0.92841 0.94569 1.20673 0.82137 0.91280 0.82898 1.90464 1.59573 1.55220 1.44565 1.41931 1.47727 1.09613 1.21914 1.19696 1.32318 0.86009 1.07944 0.90253 1.26053 0.96538 1.04055 0.94797 1.69683 1.38493 1.35780 1.12280 0.84861 0.78093 0.77048 0.78267 1.19786 1.19720 1.19526 0.89152 0.91423 0.91102 0.78302 0.81249 0.90241 0.89409 0.89775 0.88002 0.91511 0.95942 0.88952 0.96280 0.92002 0.90648 0.92104 0.86779 0.77056 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.34 71.24 0.67 -0.94 16 2 C -0.17 -3.17 6.33 25.17 0.16 -3.02 16 3 S 0.21 2.39 22.95 -56.49 -1.30 1.09 16 4 C -0.23 -2.04 11.12 66.64 0.74 -1.29 16 5 C -0.11 -1.42 8.12 22.67 0.18 -1.23 16 6 C -0.19 -3.70 5.17 -19.87 -0.10 -3.81 16 7 C 0.57 14.52 7.23 86.59 0.63 15.15 16 8 O -0.58 -19.39 15.31 -4.15 -0.06 -19.45 16 9 N -0.61 -12.53 2.87 -850.93 -2.44 -14.97 16 10 C 0.07 0.81 9.01 127.77 1.15 1.96 16 11 C 0.12 3.02 5.34 86.38 0.46 3.48 16 12 C 0.05 1.38 5.28 86.31 0.46 1.84 16 13 N -0.53 -18.08 4.50 -927.01 -4.17 -22.25 16 14 C 0.03 1.06 8.96 127.69 1.14 2.20 16 15 C 0.06 2.11 5.45 85.56 0.47 2.58 16 16 C 0.44 21.57 7.48 87.66 0.66 22.23 16 17 O -0.61 -34.30 13.91 -3.08 -0.04 -34.34 16 18 N -0.57 -29.99 5.29 -306.98 -1.62 -31.61 16 19 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 20 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 22 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 23 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H 0.09 1.19 8.11 -2.39 -0.02 1.17 16 28 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.07 1.61 7.56 -2.39 -0.02 1.59 16 30 H 0.20 0.50 8.06 -2.91 -0.02 0.47 16 31 H 0.17 1.36 6.07 -2.91 -0.02 1.34 16 32 H 0.08 0.62 7.05 -2.39 -0.02 0.60 16 33 H 0.09 0.88 8.03 -2.39 -0.02 0.86 16 34 H 0.08 0.87 6.00 -2.39 -0.01 0.85 16 35 H 0.10 2.22 8.07 -2.39 -0.02 2.20 16 36 H 0.07 1.94 5.77 -2.39 -0.01 1.92 16 37 H 0.02 0.66 8.12 -2.38 -0.02 0.64 16 38 H 0.09 2.11 7.93 -2.39 -0.02 2.09 16 39 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 2.67 5.82 -2.39 -0.01 2.66 16 41 H 0.07 2.47 6.47 -2.38 -0.02 2.45 16 42 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 43 H 0.11 3.55 7.93 -2.38 -0.02 3.53 16 44 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 45 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 Total: -1.00 -75.32 381.54 0.85 -74.47 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.29 Total: 30.86 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 7.89 Total: 20.65 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -7.96 Total: -118.74 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.11 Total: -53.79 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.30 Total: 1.09 kcal Total: -75.32 0.85 -74.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268237774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.503 kcal (2) G-P(sol) polarization free energy of solvation -75.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds