Wall clock time and date at job start Tue Mar 31 2020 23:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31892 * 119.61823 * 2 1 4 4 C 1.31855 * 121.72396 * 180.30863 * 3 2 1 5 5 C 1.38226 * 120.76214 * 359.71143 * 4 3 2 6 6 C 1.38628 * 119.16549 * 359.97438 * 5 4 3 7 7 C 1.38184 * 119.61559 * 179.73562 * 2 1 3 8 8 C 1.50696 * 120.41849 * 359.96962 * 7 2 1 9 9 N 1.46904 * 109.46800 * 79.73205 * 8 7 2 10 10 C 1.46899 * 111.00029 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 13 13 O 1.42905 * 109.47264 * 299.99921 * 11 10 9 14 14 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 15 15 N 1.46499 * 109.47658 * 184.99947 * 14 11 10 16 16 C 1.34782 * 120.00273 * 180.02562 * 15 14 11 17 17 O 1.21278 * 119.99688 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99764 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46992 * 179.97438 * 18 16 15 20 20 C 1.76191 * 99.99976 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00579 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00162 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99673 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00286 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46958 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47029 * 120.00085 * 24 22 20 27 27 H 1.48497 * 109.47082 * 240.00198 * 24 22 20 28 28 H 1.09001 * 109.47193 * 270.27047 * 1 2 3 29 29 H 1.09007 * 109.46843 * 30.26537 * 1 2 3 30 30 H 1.09001 * 109.47097 * 150.26365 * 1 2 3 31 31 H 1.07997 * 119.61681 * 179.72491 * 4 3 2 32 32 H 1.08010 * 120.41820 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.79391 * 180.02562 * 6 5 4 34 34 H 1.08995 * 109.47455 * 319.73143 * 8 7 2 35 35 H 1.09003 * 109.47449 * 199.72376 * 8 7 2 36 36 H 1.00902 * 111.00190 * 56.03702 * 9 8 7 37 37 H 1.09002 * 109.47043 * 299.99792 * 10 9 8 38 38 H 1.09001 * 109.47354 * 59.99854 * 10 9 8 39 39 H 0.96696 * 114.00036 * 299.99911 * 13 11 10 40 40 H 1.09001 * 109.47563 * 305.00337 * 14 11 10 41 41 H 1.09004 * 109.47313 * 64.99993 * 14 11 10 42 42 H 0.97002 * 119.99938 * 0.02562 * 15 14 11 43 43 H 1.09000 * 109.46972 * 300.00080 * 18 16 15 44 44 H 1.09004 * 109.46940 * 59.99787 * 18 16 15 45 45 H 0.96997 * 119.99965 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1589 1.1466 0.0000 4 6 3.4765 1.1950 -0.0060 5 6 4.2267 0.0341 -0.0067 6 6 3.5766 -1.1903 -0.0003 7 6 2.1899 -1.2013 0.0055 8 6 1.4372 -2.5068 0.0123 9 7 0.9781 -2.8143 -1.3489 10 6 0.2380 -4.0828 -1.3809 11 6 -0.2233 -4.3682 -2.8115 12 1 0.6452 -4.4376 -3.4664 13 8 -1.0731 -3.3096 -3.2581 14 6 -0.9936 -5.6896 -2.8450 15 7 -1.3320 -6.0227 -4.2309 16 6 -2.0161 -7.1512 -4.5051 17 8 -2.3519 -7.8907 -3.6043 18 6 -2.3647 -7.4934 -5.9307 19 16 -3.2758 -9.0569 -5.9703 20 6 -3.5461 -9.2096 -7.7047 21 1 -3.1766 -8.4502 -8.3778 22 6 -4.2349 -10.3055 -8.2059 23 7 -4.6858 -11.2309 -7.3855 24 14 -4.5221 -10.4671 -10.0446 25 1 -3.9207 -9.3032 -10.7437 26 1 -3.8930 -11.7194 -10.5357 27 1 -5.9816 -10.5069 -10.3160 28 1 -0.3634 0.0049 1.0277 29 1 -0.3633 0.8877 -0.5180 30 1 -0.3633 -0.8923 -0.5097 31 1 3.9753 2.1529 -0.0103 32 1 5.3058 0.0802 -0.0120 33 1 4.1367 -2.1137 -0.0002 34 1 0.5767 -2.4267 0.6765 35 1 2.0939 -3.3031 0.3627 36 1 1.7517 -2.8300 -1.9965 37 1 0.8861 -4.8902 -1.0399 38 1 -0.6308 -4.0132 -0.7264 39 1 -1.8679 -3.1898 -2.7205 40 1 -0.3755 -6.4814 -2.4216 41 1 -1.9087 -5.5917 -2.2611 42 1 -1.0638 -5.4311 -4.9513 43 1 -2.9827 -6.7015 -6.3537 44 1 -1.4497 -7.5916 -6.5149 45 1 -5.1675 -11.9965 -7.7357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268299106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:08 Heat of formation + Delta-G solvation = -58.222202 kcal Electronic energy + Delta-G solvation = -25239.431566 eV Core-core repulsion = 21382.749948 eV Total energy + Delta-G solvation = -3856.681619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78958 -39.45617 -38.17842 -36.19570 -34.11098 -33.39847 -32.96840 -32.43141 -30.57629 -29.01386 -28.03920 -26.35658 -25.47543 -24.09171 -22.85780 -22.19789 -21.77101 -20.30738 -17.93696 -17.60707 -17.07403 -16.80294 -16.53600 -16.37409 -15.77308 -15.46708 -15.24214 -15.06130 -14.80564 -14.61250 -14.44439 -14.08142 -13.85519 -13.53009 -13.29762 -13.16759 -13.05345 -12.89446 -12.76299 -12.55527 -12.42445 -12.32221 -11.75067 -11.67543 -11.32284 -11.07080 -11.02084 -10.77181 -10.42107 -10.21265 -9.84831 -9.80338 -9.43296 -9.26962 -9.08277 -8.95694 -8.88912 -8.23918 -6.50524 -6.22202 -3.92647 0.64526 0.84141 2.95598 3.07491 3.21604 3.23095 3.29250 3.33683 3.58628 3.82835 3.95459 4.15135 4.20210 4.25455 4.30576 4.43643 4.48957 4.54142 4.63329 4.74078 4.92141 4.97388 5.09609 5.13257 5.16667 5.19755 5.21876 5.23760 5.31699 5.38945 5.50272 5.67433 5.72545 5.77168 5.80321 5.83141 5.89749 6.14814 6.27390 6.38082 6.57445 6.79115 7.39487 7.59931 7.61021 7.69415 8.35370 8.58841 9.23464 10.85337 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033491 B = 0.001462 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.844969 B =19146.492393 C =19319.631332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.155 3.845 3 N -0.489 5.489 4 C 0.103 3.897 5 C -0.183 4.183 6 C -0.068 4.068 7 C -0.139 4.139 8 C 0.102 3.898 9 N -0.673 5.673 10 C 0.028 3.972 11 C 0.101 3.899 12 H 0.102 0.898 13 O -0.544 6.544 14 C 0.091 3.909 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.520 6.520 18 C -0.153 4.153 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.344 0.656 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.377 0.623 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.402 0.598 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.155 23.082 16.584 33.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.017 3.983 3 N -0.199 5.199 4 C -0.054 4.054 5 C -0.203 4.203 6 C -0.094 4.094 7 C -0.142 4.142 8 C -0.027 4.027 9 N -0.304 5.304 10 C -0.102 4.102 11 C 0.041 3.959 12 H 0.120 0.880 13 O -0.349 6.349 14 C -0.035 4.035 15 N -0.388 5.388 16 C 0.318 3.682 17 O -0.395 6.395 18 C -0.304 4.304 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.172 0.828 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.163 0.837 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.224 0.776 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.237 0.763 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.905 22.885 17.723 33.027 hybrid contribution 1.401 -0.503 -1.944 2.448 sum 17.306 22.382 15.779 32.395 Atomic orbital electron populations 1.20854 0.88515 1.04781 1.02720 1.21219 0.97247 0.87395 0.92414 1.67597 1.10016 1.29428 1.12820 1.22773 0.89554 0.98504 0.94544 1.22097 1.01472 0.93427 1.03310 1.21528 0.93785 0.98545 0.95547 1.20579 0.93955 0.96204 1.03427 1.20801 0.98209 0.92278 0.91380 1.60352 1.30102 1.33338 1.06600 1.22624 0.99267 0.90550 0.97754 1.22084 0.93492 0.85718 0.94597 0.87985 1.86613 1.37337 1.53461 1.57525 1.21908 1.00126 0.96608 0.84820 1.45867 1.59569 1.25140 1.08234 1.20333 0.76687 0.79990 0.91187 1.90698 1.51934 1.49147 1.47690 1.23526 1.05087 1.06846 0.94900 1.85374 1.69306 1.18479 1.10330 1.22918 1.42278 1.11133 0.92005 0.90838 1.24995 0.94782 0.94740 0.99064 1.70027 1.35277 1.10297 1.34725 0.86111 0.78116 0.78211 0.83029 1.19600 1.20573 1.20555 0.90889 0.90652 0.88648 0.82818 0.84842 0.85083 0.89515 0.94148 0.83737 0.93725 0.89931 0.77603 0.90929 0.91204 0.76313 0.89116 0.89224 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.44 36.01 0.34 -0.43 16 2 C 0.16 1.31 6.78 -82.59 -0.56 0.75 16 3 N -0.49 -4.65 10.27 -9.47 -0.10 -4.75 16 4 C 0.10 0.75 11.18 -17.55 -0.20 0.55 16 5 C -0.18 -1.07 10.11 -39.44 -0.40 -1.47 16 6 C -0.07 -0.41 9.82 -39.28 -0.39 -0.79 16 7 C -0.14 -0.96 5.41 -104.48 -0.57 -1.52 16 8 C 0.10 0.55 4.95 -4.98 -0.02 0.53 16 9 N -0.67 -3.91 5.68 -115.06 -0.65 -4.56 16 10 C 0.03 0.15 5.35 -3.83 -0.02 0.13 16 11 C 0.10 0.72 3.21 -26.74 -0.09 0.63 16 12 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 13 O -0.54 -4.50 13.15 -35.23 -0.46 -4.97 16 14 C 0.09 0.91 5.31 -4.05 -0.02 0.89 16 15 N -0.73 -9.42 5.50 -60.30 -0.33 -9.75 16 16 C 0.53 9.77 7.85 -10.98 -0.09 9.68 16 17 O -0.52 -11.63 15.86 5.56 0.09 -11.54 16 18 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.63 6.33 -51.93 -0.33 0.30 16 31 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 32 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 33 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.09 0.45 7.31 -51.93 -0.38 0.07 16 35 H 0.04 0.19 8.03 -51.93 -0.42 -0.23 16 36 H 0.34 2.06 8.72 -39.29 -0.34 1.72 16 37 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 2.25 9.05 45.56 0.41 2.67 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.40 4.36 8.47 -40.82 -0.35 4.01 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 397.17 15.07 5.99 5.99 Total: -1.00 -36.44 397.17 -9.58 -46.02 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.02 Total: 3.35 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.58 Total: -6.89 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.35 Total: -44.48 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.38 Total: -16.50 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.44 -9.58 -46.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268299106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.199 kcal (2) G-P(sol) polarization free energy of solvation -36.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds