Wall clock time and date at job start Tue Mar 31 2020 23:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31892 * 119.61823 * 2 1 4 4 C 1.31855 * 121.72396 * 180.30863 * 3 2 1 5 5 C 1.38226 * 120.76214 * 359.71143 * 4 3 2 6 6 C 1.38628 * 119.16549 * 359.97438 * 5 4 3 7 7 C 1.38184 * 119.61559 * 179.73562 * 2 1 3 8 8 C 1.50696 * 120.41849 * 359.96962 * 7 2 1 9 9 N 1.46904 * 109.46800 * 79.73205 * 8 7 2 10 10 C 1.46899 * 111.00029 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 13 13 O 1.42905 * 109.47264 * 299.99921 * 11 10 9 14 14 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 15 15 N 1.46499 * 109.47658 * 184.99947 * 14 11 10 16 16 C 1.34782 * 120.00273 * 180.02562 * 15 14 11 17 17 O 1.21278 * 119.99688 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99764 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46992 * 179.97438 * 18 16 15 20 20 C 1.76191 * 99.99976 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00579 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00162 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99673 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00286 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46958 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47029 * 120.00085 * 24 22 20 27 27 H 1.48497 * 109.47082 * 240.00198 * 24 22 20 28 28 H 1.09001 * 109.47193 * 270.27047 * 1 2 3 29 29 H 1.09007 * 109.46843 * 30.26537 * 1 2 3 30 30 H 1.09001 * 109.47097 * 150.26365 * 1 2 3 31 31 H 1.07997 * 119.61681 * 179.72491 * 4 3 2 32 32 H 1.08010 * 120.41820 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.79391 * 180.02562 * 6 5 4 34 34 H 1.08995 * 109.47455 * 319.73143 * 8 7 2 35 35 H 1.09003 * 109.47449 * 199.72376 * 8 7 2 36 36 H 1.00902 * 111.00190 * 56.03702 * 9 8 7 37 37 H 1.09002 * 109.47043 * 299.99792 * 10 9 8 38 38 H 1.09001 * 109.47354 * 59.99854 * 10 9 8 39 39 H 0.96696 * 114.00036 * 299.99911 * 13 11 10 40 40 H 1.09001 * 109.47563 * 305.00337 * 14 11 10 41 41 H 1.09004 * 109.47313 * 64.99993 * 14 11 10 42 42 H 0.97002 * 119.99938 * 0.02562 * 15 14 11 43 43 H 1.09000 * 109.46972 * 300.00080 * 18 16 15 44 44 H 1.09004 * 109.46940 * 59.99787 * 18 16 15 45 45 H 0.96997 * 119.99965 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1589 1.1466 0.0000 4 6 3.4765 1.1950 -0.0060 5 6 4.2267 0.0341 -0.0067 6 6 3.5766 -1.1903 -0.0003 7 6 2.1899 -1.2013 0.0055 8 6 1.4372 -2.5068 0.0123 9 7 0.9781 -2.8143 -1.3489 10 6 0.2380 -4.0828 -1.3809 11 6 -0.2233 -4.3682 -2.8115 12 1 0.6452 -4.4376 -3.4664 13 8 -1.0731 -3.3096 -3.2581 14 6 -0.9936 -5.6896 -2.8450 15 7 -1.3320 -6.0227 -4.2309 16 6 -2.0161 -7.1512 -4.5051 17 8 -2.3519 -7.8907 -3.6043 18 6 -2.3647 -7.4934 -5.9307 19 16 -3.2758 -9.0569 -5.9703 20 6 -3.5461 -9.2096 -7.7047 21 1 -3.1766 -8.4502 -8.3778 22 6 -4.2349 -10.3055 -8.2059 23 7 -4.6858 -11.2309 -7.3855 24 14 -4.5221 -10.4671 -10.0446 25 1 -3.9207 -9.3032 -10.7437 26 1 -3.8930 -11.7194 -10.5357 27 1 -5.9816 -10.5069 -10.3160 28 1 -0.3634 0.0049 1.0277 29 1 -0.3633 0.8877 -0.5180 30 1 -0.3633 -0.8923 -0.5097 31 1 3.9753 2.1529 -0.0103 32 1 5.3058 0.0802 -0.0120 33 1 4.1367 -2.1137 -0.0002 34 1 0.5767 -2.4267 0.6765 35 1 2.0939 -3.3031 0.3627 36 1 1.7517 -2.8300 -1.9965 37 1 0.8861 -4.8902 -1.0399 38 1 -0.6308 -4.0132 -0.7264 39 1 -1.8679 -3.1898 -2.7205 40 1 -0.3755 -6.4814 -2.4216 41 1 -1.9087 -5.5917 -2.2611 42 1 -1.0638 -5.4311 -4.9513 43 1 -2.9827 -6.7015 -6.3537 44 1 -1.4497 -7.5916 -6.5149 45 1 -5.1675 -11.9965 -7.7357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268299106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:07 Heat of formation + Delta-G solvation = -88.009917 kcal Electronic energy + Delta-G solvation = -25240.723259 eV Core-core repulsion = 21382.749948 eV Total energy + Delta-G solvation = -3857.973311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27580 -40.70028 -38.98004 -36.74954 -35.25222 -34.58406 -33.87720 -33.48955 -31.70306 -30.03658 -28.63606 -27.69860 -26.93622 -24.75700 -23.34231 -22.78739 -22.28678 -21.65582 -19.85285 -18.20357 -17.93117 -17.69413 -17.27356 -17.23518 -16.88257 -16.68337 -16.28437 -16.01500 -15.94134 -15.65112 -15.30520 -15.05272 -14.65186 -14.55488 -14.35060 -14.03093 -13.93360 -13.78740 -13.56305 -13.27476 -13.19999 -13.15889 -12.94942 -12.90702 -12.77085 -12.60065 -12.11718 -11.91647 -11.72260 -11.17816 -11.15812 -10.85858 -10.69922 -10.36268 -10.27747 -10.12890 -9.75192 -9.33213 -8.66590 -8.35004 -6.12846 0.15929 0.36457 1.27358 1.41575 1.47279 1.58665 1.61220 2.23475 2.28374 2.77252 2.99360 3.19653 3.32944 3.48556 3.59146 3.79825 3.82104 3.91963 3.95635 4.04357 4.10711 4.14686 4.16893 4.30162 4.47596 4.51947 4.52918 4.62221 4.70398 4.74697 4.77242 4.77973 4.82406 4.93367 5.09417 5.26270 5.30493 5.34980 5.41511 5.42519 5.82295 5.97004 6.20092 6.36262 6.49147 6.89007 7.06676 7.10029 7.24043 8.74502 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033491 B = 0.001462 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.844969 B =19146.492393 C =19319.631332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.131 3.869 3 N -0.523 5.523 4 C 0.086 3.914 5 C -0.181 4.181 6 C -0.073 4.073 7 C -0.143 4.143 8 C 0.107 3.893 9 N -0.677 5.677 10 C 0.035 3.965 11 C 0.117 3.883 12 H 0.108 0.892 13 O -0.558 6.558 14 C 0.089 3.911 15 N -0.708 5.708 16 C 0.534 3.466 17 O -0.567 6.567 18 C -0.131 4.131 19 S -0.150 6.150 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.274 1.274 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.344 0.656 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.386 0.614 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.416 0.584 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.770 24.245 15.803 34.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.007 4.007 3 N -0.234 5.234 4 C -0.071 4.071 5 C -0.201 4.201 6 C -0.099 4.099 7 C -0.145 4.145 8 C -0.021 4.021 9 N -0.308 5.308 10 C -0.095 4.095 11 C 0.056 3.944 12 H 0.126 0.874 13 O -0.364 6.364 14 C -0.036 4.036 15 N -0.362 5.362 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.077 5.923 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.189 0.811 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.163 0.837 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.235 0.765 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.547 24.109 16.948 34.298 hybrid contribution 0.995 -0.740 -1.617 2.038 sum 18.542 23.368 15.331 33.540 Atomic orbital electron populations 1.20813 0.88183 1.04283 1.03035 1.21470 0.97825 0.87923 0.93475 1.67563 1.11326 1.30374 1.14090 1.23180 0.89188 1.00039 0.94695 1.22409 1.02761 0.92906 1.01983 1.21875 0.93664 0.99591 0.94771 1.20728 0.94559 0.96173 1.03057 1.20772 0.98382 0.91866 0.91124 1.60311 1.30263 1.33384 1.06886 1.22523 0.99635 0.90761 0.96555 1.21951 0.92849 0.83702 0.95853 0.87443 1.86594 1.38061 1.53524 1.58259 1.22128 1.00476 0.98256 0.82698 1.45638 1.57183 1.23152 1.10186 1.20025 0.77171 0.81051 0.89812 1.90687 1.54283 1.51069 1.48482 1.23378 1.04948 1.02883 0.96996 1.85524 1.71374 1.24162 1.11230 1.23250 1.42481 1.11659 0.92133 0.89980 1.26115 0.94182 0.94148 1.04605 1.70183 1.36183 1.11073 1.37305 0.84906 0.78199 0.78685 0.76155 1.18119 1.19874 1.19917 0.90202 0.91789 0.88350 0.81140 0.82292 0.82851 0.89346 0.92990 0.83747 0.92908 0.89379 0.76486 0.91066 0.91443 0.74723 0.87415 0.87317 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.44 71.24 0.67 -0.79 16 2 C 0.13 2.16 6.78 42.54 0.29 2.45 16 3 N -0.52 -9.94 10.27 -183.88 -1.89 -11.82 16 4 C 0.09 1.17 11.18 84.69 0.95 2.12 16 5 C -0.18 -1.79 10.11 22.36 0.23 -1.56 16 6 C -0.07 -0.72 9.82 22.47 0.22 -0.50 16 7 C -0.14 -1.77 5.41 -19.77 -0.11 -1.87 16 8 C 0.11 0.95 4.95 85.55 0.42 1.37 16 9 N -0.68 -6.42 5.68 -517.93 -2.94 -9.36 16 10 C 0.04 0.30 5.35 86.30 0.46 0.76 16 11 C 0.12 1.37 3.21 30.59 0.10 1.47 16 12 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 13 O -0.56 -7.96 13.15 -148.98 -1.96 -9.92 16 14 C 0.09 1.62 5.31 86.38 0.46 2.08 16 15 N -0.71 -16.83 5.50 -463.06 -2.55 -19.38 16 16 C 0.53 19.20 7.85 87.66 0.69 19.88 16 17 O -0.57 -25.59 15.86 -3.02 -0.05 -25.64 16 18 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 19 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 20 C -0.55 -31.32 9.50 67.96 0.65 -30.67 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 24 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.10 1.24 6.33 -2.39 -0.02 1.22 16 31 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.09 0.75 7.31 -2.39 -0.02 0.74 16 35 H 0.05 0.35 8.03 -2.39 -0.02 0.33 16 36 H 0.34 3.33 8.72 -89.69 -0.78 2.55 16 37 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.39 3.84 9.05 -74.06 -0.67 3.17 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.42 7.87 8.47 -92.71 -0.79 7.08 16 43 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 44 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.96 397.17 -3.51 -84.47 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -1.21 Total: 19.79 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 5.93 Total: -8.71 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -7.09 Total: -96.14 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -2.01 Total: -35.56 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -80.96 -3.51 -84.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268299106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.536 kcal (2) G-P(sol) polarization free energy of solvation -80.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds