Wall clock time and date at job start Tue Mar 31 2020 23:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47167 * 89.99892 * 6 5 4 8 8 O 1.21283 * 120.00356 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00007 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00315 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47063 * 324.99936 * 10 9 7 12 12 C 1.53005 * 109.47142 * 84.99739 * 10 9 7 13 13 C 1.52996 * 109.47266 * 204.99965 * 10 9 7 14 14 N 1.46893 * 109.47316 * 55.00097 * 13 10 9 15 15 C 1.46906 * 111.00153 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.47075 * 179.97438 * 15 14 13 17 17 O 1.21295 * 119.99754 * 0.02562 * 16 15 14 18 18 N 1.34771 * 119.99712 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99749 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00325 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00183 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00459 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46819 * 59.99775 * 23 21 19 25 25 H 1.48490 * 109.47377 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47051 * 300.00437 * 23 21 19 27 27 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 28 28 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 31 31 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 32 32 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 33 33 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 34 34 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 35 35 H 0.97005 * 119.99811 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47334 * 180.02562 * 12 10 9 37 37 H 1.08994 * 109.47206 * 300.00325 * 12 10 9 38 38 H 1.09001 * 109.46980 * 60.00146 * 12 10 9 39 39 H 1.08999 * 109.47417 * 175.00331 * 13 10 9 40 40 H 1.09001 * 109.47111 * 294.99911 * 13 10 9 41 41 H 1.00902 * 110.99898 * 303.94991 * 14 13 10 42 42 H 1.08998 * 109.46920 * 299.99476 * 15 14 13 43 43 H 1.08997 * 109.47120 * 59.99790 * 15 14 13 44 44 H 0.96998 * 120.00560 * 0.02562 * 18 16 15 45 45 H 0.97004 * 120.00266 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 6 5.8564 -1.1535 1.4212 8 8 5.1187 -0.8763 2.3431 9 7 7.0973 -1.6184 1.6674 10 6 7.5547 -1.7895 3.0486 11 1 7.1319 -1.0014 3.6717 12 6 7.0987 -3.1531 3.5717 13 6 9.0820 -1.7108 3.0934 14 7 9.5257 -0.4514 2.4813 15 6 10.9904 -0.3412 2.5061 16 6 11.4071 0.9602 1.8705 17 8 10.5665 1.7212 1.4398 18 7 12.7136 1.2787 1.7818 19 6 13.0926 2.4629 1.2041 20 1 12.3443 3.1402 0.8198 21 6 14.4396 2.7917 1.1130 22 7 15.3501 1.9673 1.5801 23 14 14.9561 4.4054 0.3265 24 1 14.3609 5.5369 1.0819 25 1 16.4366 4.5169 0.3519 26 1 14.4812 4.4450 -1.0800 27 16 2.5210 -1.4371 0.0077 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.8669 2.0895 -0.0007 32 1 4.3721 1.6351 0.0002 33 1 5.4136 -1.9379 -0.5135 34 1 6.0389 -0.2713 -0.5134 35 1 7.6874 -1.8398 0.9301 36 1 7.4387 -3.2802 4.5995 37 1 6.0107 -3.2092 3.5398 38 1 7.5215 -3.9412 2.9487 39 1 9.4176 -1.7491 4.1298 40 1 9.5054 -2.5512 2.5433 41 1 9.1726 -0.3627 1.5402 42 1 11.3395 -0.3701 3.5382 43 1 11.4266 -1.1721 1.9516 44 1 13.3857 0.6703 2.1265 45 1 16.2905 2.1966 1.5162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268717366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:56 Heat of formation + Delta-G solvation = -48.678050 kcal Electronic energy + Delta-G solvation = -25903.263711 eV Core-core repulsion = 22046.995958 eV Total energy + Delta-G solvation = -3856.267753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.02494 -38.39074 -38.02064 -36.69662 -34.27800 -33.65188 -33.28995 -31.42173 -31.19293 -29.65164 -27.62411 -25.45907 -24.98031 -23.34290 -23.02390 -21.55321 -20.53950 -19.31079 -18.96781 -17.93758 -17.39927 -17.10901 -16.38660 -16.01551 -15.48704 -15.29994 -15.13256 -14.55921 -14.47970 -14.25370 -13.93216 -13.86252 -13.61236 -13.43550 -13.14658 -13.08682 -12.90257 -12.63518 -12.41374 -12.12342 -12.02223 -11.94012 -11.72042 -11.63065 -11.57810 -11.47861 -11.07182 -10.98325 -10.86633 -10.45899 -10.23436 -9.93903 -9.52246 -9.17810 -8.59168 -8.53529 -8.49817 -8.11608 -7.98530 -6.43824 -3.84782 0.82915 1.46150 1.84734 2.58596 2.60172 3.15025 3.18663 3.24586 3.28977 3.87737 4.03138 4.26077 4.43127 4.66469 4.70245 4.87664 4.91991 4.99138 5.00453 5.16315 5.19790 5.22178 5.24280 5.26783 5.39360 5.41347 5.52844 5.54638 5.60944 5.67020 5.74061 5.91523 5.95115 6.03840 6.06170 6.15351 6.23200 6.40405 6.41927 7.12164 7.38277 7.52947 7.57335 8.03645 8.16556 8.58726 9.15521 9.51628 10.03025 10.73707 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014409 B = 0.002036 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.784762 B =13750.702225 C =15374.435524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.183 4.183 3 C -0.136 4.136 4 C -0.121 4.121 5 C -0.158 4.158 6 C -0.073 4.073 7 C 0.519 3.481 8 O -0.527 6.527 9 N -0.724 5.724 10 C 0.145 3.855 11 H 0.097 0.903 12 C -0.161 4.161 13 C 0.051 3.949 14 N -0.667 5.667 15 C 0.050 3.950 16 C 0.439 3.561 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 S 0.099 5.901 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.397 0.603 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.032 0.968 41 H 0.347 0.653 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.710 -12.428 -2.597 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.300 4.300 3 C -0.166 4.166 4 C -0.151 4.151 5 C -0.275 4.275 6 C -0.115 4.115 7 C 0.304 3.696 8 O -0.402 6.402 9 N -0.376 5.376 10 C 0.040 3.960 11 H 0.116 0.884 12 C -0.220 4.220 13 C -0.079 4.079 14 N -0.300 5.300 15 C -0.083 4.083 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 S 0.363 5.637 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.050 0.950 41 H 0.167 0.833 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.962 -12.871 -1.619 26.373 hybrid contribution 1.822 1.187 -1.132 2.451 sum -21.140 -11.685 -2.751 24.310 Atomic orbital electron populations 1.20318 0.87974 1.03097 1.02556 1.24433 0.99801 0.95713 1.10078 1.20035 0.92850 0.99197 1.04557 1.20084 0.96396 0.95944 1.02699 1.23668 0.96963 0.96513 1.10388 1.20180 0.92110 1.03742 0.95449 1.20386 0.81629 0.76568 0.91038 1.90726 1.54362 1.49091 1.46018 1.46000 1.15353 1.67390 1.08882 1.21025 0.93584 0.98309 0.83049 0.88449 1.22146 1.02137 0.96367 1.01342 1.22303 0.93476 0.90873 1.01292 1.60017 1.09414 1.33549 1.26990 1.21694 0.88270 0.96751 1.01549 1.19797 0.83479 0.88676 0.85590 1.90528 1.50830 1.52468 1.52894 1.41853 1.05288 1.19848 1.52932 1.19653 0.92117 0.96442 1.34777 0.87978 1.25265 0.95467 0.99455 0.97731 1.69602 1.01533 1.36846 1.46294 0.85911 0.77170 0.81506 0.79599 1.19858 1.20971 1.19919 1.84040 0.96521 1.09572 1.73544 0.90867 0.90575 0.91442 0.84441 0.84219 0.87982 0.86566 0.76870 0.91408 0.91942 0.92577 0.89489 0.94999 0.83295 0.89468 0.93868 0.77458 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.38 36.01 0.37 -0.19 16 2 C -0.18 -1.83 6.51 -36.00 -0.23 -2.06 16 3 C -0.14 -1.44 10.05 -41.21 -0.41 -1.85 16 4 C -0.12 -1.40 10.05 -41.21 -0.41 -1.82 16 5 C -0.16 -1.79 5.00 -36.00 -0.18 -1.97 16 6 C -0.07 -0.69 6.19 -29.04 -0.18 -0.87 16 7 C 0.52 6.35 7.79 -10.99 -0.09 6.26 16 8 O -0.53 -8.54 15.70 5.55 0.09 -8.45 16 9 N -0.72 -7.54 4.36 -53.81 -0.23 -7.77 16 10 C 0.14 1.61 2.88 -67.93 -0.20 1.42 16 11 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 12 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 13 C 0.05 0.57 5.30 -3.83 -0.02 0.55 16 14 N -0.67 -10.29 6.12 -115.06 -0.70 -10.99 16 15 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 16 C 0.44 10.21 7.82 -10.99 -0.09 10.12 16 17 O -0.58 -15.69 15.78 5.54 0.09 -15.60 16 18 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 23 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 S 0.10 1.03 23.31 -107.50 -2.51 -1.47 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.24 8.15 -40.82 -0.33 2.91 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.35 5.42 7.28 -39.29 -0.29 5.13 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -34.34 397.47 -9.76 -44.10 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -6.76 Total: 14.69 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.36 Total: 1.31 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.27 Total: -56.47 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.17 Total: -24.05 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.34 -9.76 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268717366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.577 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds