Wall clock time and date at job start Tue Mar 31 2020 22:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99583 * 2 1 4 4 H 1.48498 * 109.46962 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47284 * 300.00038 * 3 2 1 6 6 H 1.48500 * 109.46694 * 60.00338 * 3 2 1 7 7 C 1.37870 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00447 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.53502 * 114.20750 * 180.02562 * 9 7 2 11 11 N 1.47069 * 87.98338 * 220.14658 * 10 9 7 12 12 C 1.34776 * 136.05807 * 207.08342 * 11 10 9 13 13 O 1.21553 * 119.99759 * 0.02562 * 12 11 10 14 14 C 1.47593 * 120.00130 * 180.02562 * 12 11 10 15 15 N 1.28978 * 125.80267 * 359.97367 * 14 12 11 16 16 O 1.41402 * 112.88022 * 180.23577 * 15 14 12 17 17 C 1.43965 * 107.58134 * 341.86621 * 16 15 14 18 18 H 1.09000 * 113.34718 * 264.05329 * 17 16 15 19 19 C 1.53728 * 109.61029 * 136.41496 * 17 16 15 20 20 N 1.46688 * 106.91307 * 279.23176 * 19 17 16 21 21 C 1.34770 * 125.30935 * 162.00038 * 20 19 17 22 22 O 1.21277 * 119.99970 * 179.97438 * 21 20 19 23 23 C 1.50699 * 119.99763 * 359.97047 * 21 20 19 24 24 C 1.53005 * 109.47139 * 180.02562 * 23 21 20 25 25 F 1.39898 * 109.47357 * 180.02562 * 24 23 21 26 26 C 1.46565 * 109.38315 * 341.97388 * 20 19 17 27 27 C 1.51770 * 125.80547 * 179.97438 * 14 12 11 28 28 H 1.09002 * 113.92279 * 318.70995 * 27 14 12 29 29 C 1.47066 * 87.88490 * 27.34261 * 11 10 9 30 30 H 0.96993 * 120.00786 * 0.02562 * 1 2 3 31 31 H 1.09006 * 113.28285 * 313.07242 * 9 7 2 32 32 H 1.08994 * 113.46906 * 105.36476 * 10 9 7 33 33 H 1.09000 * 113.51523 * 334.93220 * 10 9 7 34 34 H 1.08997 * 109.97180 * 38.59582 * 19 17 16 35 35 H 1.08998 * 109.96783 * 159.86713 * 19 17 16 36 36 H 1.09000 * 109.47252 * 299.99998 * 23 21 20 37 37 H 1.09001 * 109.46996 * 60.00313 * 23 21 20 38 38 H 1.09000 * 109.46964 * 300.00073 * 24 23 21 39 39 H 1.09001 * 109.47004 * 60.00216 * 24 23 21 40 40 H 1.09004 * 109.73053 * 120.95463 * 26 20 19 41 41 H 1.08999 * 109.73455 * 241.60138 * 26 20 19 42 42 H 1.09002 * 113.47278 * 87.43920 * 29 11 10 43 43 H 1.09006 * 113.46702 * 217.87697 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.1490 -3.7441 -0.0005 11 7 1.2075 -4.3593 -0.9482 12 6 0.8321 -5.6139 -1.2669 13 8 1.3295 -6.5618 -0.6911 14 6 -0.1828 -5.8368 -2.3150 15 7 -0.7809 -4.9175 -2.9938 16 8 -1.7086 -5.4377 -3.9256 17 6 -1.3910 -6.8276 -4.1257 18 1 -0.7634 -7.0058 -4.9990 19 6 -2.6850 -7.6574 -4.1281 20 7 -3.0563 -7.8729 -2.7254 21 6 -4.2767 -8.2447 -2.2909 22 8 -4.4778 -8.3963 -1.1046 23 6 -5.3914 -8.4720 -3.2793 24 6 -6.6611 -8.8822 -2.5306 25 9 -7.6958 -9.0938 -3.4481 26 6 -1.8929 -7.6215 -1.8701 27 6 -0.7001 -7.1866 -2.7773 28 1 0.0746 -7.9471 -2.8751 29 6 0.8606 -3.0033 -1.3996 30 1 -0.4851 0.8399 -0.0004 31 1 0.4439 -2.5306 0.7312 32 1 2.1881 -4.2512 0.9635 33 1 3.1377 -3.5674 -0.4240 34 1 -3.4760 -7.1122 -4.6430 35 1 -2.5121 -8.6152 -4.6189 36 1 -5.5782 -7.5525 -3.8340 37 1 -5.1064 -9.2632 -3.9727 38 1 -6.4745 -9.8016 -1.9755 39 1 -6.9459 -8.0907 -1.8374 40 1 -2.1228 -6.8266 -1.1605 41 1 -1.6290 -8.5312 -1.3310 42 1 1.5094 -2.6303 -2.1921 43 1 -0.1981 -2.8792 -1.6274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269587027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:30 Heat of formation + Delta-G solvation = -46.458662 kcal Electronic energy + Delta-G solvation = -29247.999540 eV Core-core repulsion = 24825.614851 eV Total energy + Delta-G solvation = -4422.384689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.98839 -41.58903 -39.88036 -39.34350 -37.29348 -36.46733 -33.63813 -32.81384 -32.63896 -31.03568 -29.61305 -28.77233 -25.77101 -25.45269 -25.08326 -23.51068 -23.09414 -21.80727 -20.22998 -19.85814 -18.65444 -17.96700 -17.26550 -17.06405 -16.77271 -16.53520 -16.39843 -15.83807 -15.54419 -15.38160 -15.24997 -14.96509 -14.70709 -14.59435 -14.30173 -13.90857 -13.58175 -13.36117 -13.00597 -12.77383 -12.66226 -12.41829 -12.37584 -12.19005 -12.00137 -11.64247 -11.63621 -11.41508 -11.20652 -11.11550 -10.99906 -10.84586 -10.42293 -10.34379 -10.04081 -9.91537 -9.36539 -9.18146 -9.12193 -8.64547 -8.12955 -6.22223 -4.29087 0.94741 2.15501 2.36049 2.51411 3.03031 3.17777 3.21055 3.30308 3.33156 3.68133 3.89203 3.95032 4.04832 4.09945 4.20743 4.30353 4.36122 4.40111 4.72063 4.76130 4.80568 4.88381 5.01409 5.03797 5.10099 5.12854 5.26937 5.41968 5.48086 5.53399 5.73693 5.89636 5.97762 6.10297 6.29501 6.46581 6.51676 6.76863 6.92714 6.94046 7.47362 7.65092 7.74442 8.08711 8.10328 8.35539 8.75212 9.38354 10.87373 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.002431 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.141212 B =11514.823437 C =12208.791783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.066 0.934 9 C 0.036 3.964 10 C 0.103 3.897 11 N -0.619 5.619 12 C 0.597 3.403 13 O -0.543 6.543 14 C 0.066 3.934 15 N -0.220 5.220 16 O -0.183 6.183 17 C 0.029 3.971 18 H 0.127 0.873 19 C 0.103 3.897 20 N -0.613 5.613 21 C 0.537 3.463 22 O -0.531 6.531 23 C -0.170 4.170 24 C 0.076 3.924 25 F -0.216 7.216 26 C 0.121 3.879 27 C -0.101 4.101 28 H 0.138 0.862 29 C 0.098 3.902 30 H 0.265 0.735 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.759 -16.950 -11.062 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.016 3.984 10 C -0.018 4.018 11 N -0.352 5.352 12 C 0.382 3.618 13 O -0.420 6.420 14 C -0.130 4.130 15 N 0.037 4.963 16 O -0.203 6.203 17 C -0.031 4.031 18 H 0.144 0.856 19 C -0.021 4.021 20 N -0.348 5.348 21 C 0.326 3.674 22 O -0.408 6.408 23 C -0.210 4.210 24 C 0.021 3.979 25 F -0.197 7.197 26 C -0.003 4.003 27 C -0.123 4.123 28 H 0.156 0.844 29 C -0.024 4.024 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.209 -16.450 -10.410 20.760 hybrid contribution 0.512 0.076 -0.361 0.632 sum -6.697 -16.374 -10.771 20.712 Atomic orbital electron populations 1.69958 1.06091 1.27212 1.48552 1.25043 0.94869 0.99507 0.94100 0.86463 0.80139 0.83234 0.77766 1.19526 1.20844 1.20834 1.20888 0.93033 0.89301 1.52514 0.91616 1.20429 0.94707 0.91123 0.92116 1.23528 0.94244 0.92914 0.91158 1.50042 1.41232 1.04638 1.39238 1.16350 0.81460 0.82524 0.81433 1.90791 1.56935 1.40888 1.53396 1.26037 0.97267 0.93098 0.96572 1.78765 0.97728 1.21013 0.98771 1.91295 1.49245 1.22243 1.57529 1.24665 0.96353 0.83895 0.98140 0.85591 1.22097 0.96734 0.99714 0.83536 1.48072 1.10285 1.68607 1.07830 1.19984 0.81668 0.76475 0.89310 1.90774 1.81525 1.51232 1.17233 1.22205 0.94090 1.05513 0.99223 1.21668 0.82924 1.03967 0.89354 1.92778 1.60608 1.96656 1.69682 1.22046 0.82807 1.02773 0.92675 1.23690 0.98084 0.97039 0.93466 0.84431 1.23907 1.01070 0.75233 1.02163 0.92541 0.91107 0.91755 0.90059 0.88570 0.88998 0.87334 0.87496 0.89721 0.89614 0.90308 0.89304 0.90260 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.93 13.26 55.43 0.74 -23.19 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -12.88 8.83 -34.44 -0.30 -13.18 16 8 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.04 0.81 3.79 -91.12 -0.35 0.47 16 10 C 0.10 2.02 8.17 -8.50 -0.07 1.95 16 11 N -0.62 -12.19 3.69 -186.27 -0.69 -12.88 16 12 C 0.60 11.05 8.07 -12.44 -0.10 10.95 16 13 O -0.54 -10.86 17.73 5.32 0.09 -10.76 16 14 C 0.07 1.02 6.26 -79.45 -0.50 0.52 16 15 N -0.22 -3.62 10.96 35.29 0.39 -3.23 16 16 O -0.18 -2.52 12.13 -11.37 -0.14 -2.66 16 17 C 0.03 0.26 4.85 -24.91 -0.12 0.14 16 18 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 19 C 0.10 0.70 6.23 -3.56 -0.02 0.67 16 20 N -0.61 -6.15 3.31 -171.12 -0.57 -6.72 16 21 C 0.54 5.73 7.83 -10.99 -0.09 5.64 16 22 O -0.53 -7.76 16.29 5.56 0.09 -7.66 16 23 C -0.17 -1.17 5.19 -27.88 -0.14 -1.32 16 24 C 0.08 0.60 6.84 37.16 0.25 0.85 16 25 F -0.22 -2.00 17.36 2.25 0.04 -1.96 16 26 C 0.12 1.44 6.49 -2.38 -0.02 1.42 16 27 C -0.10 -1.12 4.12 -88.18 -0.36 -1.48 16 28 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 29 C 0.10 2.06 7.34 -8.37 -0.06 2.00 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.07 1.78 8.11 -51.93 -0.42 1.36 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 34 H 0.10 0.55 7.62 -51.93 -0.40 0.16 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.11 0.63 7.87 -51.93 -0.41 0.22 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 39 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.08 1.17 7.66 -51.93 -0.40 0.77 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 43 H 0.07 1.60 7.47 -51.93 -0.39 1.21 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -31.59 371.16 -7.22 -38.82 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.77 Total: -0.45 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -1.97 Total: 10.32 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.13 Total: -46.02 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.05 Total: -21.09 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.59 -7.22 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269587027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.642 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds