Wall clock time and date at job start Tue Mar 31 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99583 * 2 1 4 4 H 1.48498 * 109.46962 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47284 * 300.00038 * 3 2 1 6 6 H 1.48500 * 109.46694 * 60.00338 * 3 2 1 7 7 C 1.37870 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00447 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.53502 * 114.20750 * 180.02562 * 9 7 2 11 11 N 1.47069 * 87.98338 * 220.14658 * 10 9 7 12 12 C 1.34776 * 136.05807 * 207.08342 * 11 10 9 13 13 O 1.21553 * 119.99759 * 0.02562 * 12 11 10 14 14 C 1.47593 * 120.00130 * 180.02562 * 12 11 10 15 15 N 1.28978 * 125.80267 * 359.97367 * 14 12 11 16 16 O 1.41402 * 112.88022 * 180.23577 * 15 14 12 17 17 C 1.43965 * 107.58134 * 341.86621 * 16 15 14 18 18 H 1.09000 * 113.34718 * 264.05329 * 17 16 15 19 19 C 1.53728 * 109.61029 * 136.41496 * 17 16 15 20 20 N 1.46688 * 106.91307 * 279.23176 * 19 17 16 21 21 C 1.34770 * 125.30935 * 162.00038 * 20 19 17 22 22 O 1.21277 * 119.99970 * 179.97438 * 21 20 19 23 23 C 1.50699 * 119.99763 * 359.97047 * 21 20 19 24 24 C 1.53005 * 109.47139 * 180.02562 * 23 21 20 25 25 F 1.39898 * 109.47357 * 180.02562 * 24 23 21 26 26 C 1.46565 * 109.38315 * 341.97388 * 20 19 17 27 27 C 1.51770 * 125.80547 * 179.97438 * 14 12 11 28 28 H 1.09002 * 113.92279 * 318.70995 * 27 14 12 29 29 C 1.47066 * 87.88490 * 27.34261 * 11 10 9 30 30 H 0.96993 * 120.00786 * 0.02562 * 1 2 3 31 31 H 1.09006 * 113.28285 * 313.07242 * 9 7 2 32 32 H 1.08994 * 113.46906 * 105.36476 * 10 9 7 33 33 H 1.09000 * 113.51523 * 334.93220 * 10 9 7 34 34 H 1.08997 * 109.97180 * 38.59582 * 19 17 16 35 35 H 1.08998 * 109.96783 * 159.86713 * 19 17 16 36 36 H 1.09000 * 109.47252 * 299.99998 * 23 21 20 37 37 H 1.09001 * 109.46996 * 60.00313 * 23 21 20 38 38 H 1.09000 * 109.46964 * 300.00073 * 24 23 21 39 39 H 1.09001 * 109.47004 * 60.00216 * 24 23 21 40 40 H 1.09004 * 109.73053 * 120.95463 * 26 20 19 41 41 H 1.08999 * 109.73455 * 241.60138 * 26 20 19 42 42 H 1.09002 * 113.47278 * 87.43920 * 29 11 10 43 43 H 1.09006 * 113.46702 * 217.87697 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.1490 -3.7441 -0.0005 11 7 1.2075 -4.3593 -0.9482 12 6 0.8321 -5.6139 -1.2669 13 8 1.3295 -6.5618 -0.6911 14 6 -0.1828 -5.8368 -2.3150 15 7 -0.7809 -4.9175 -2.9938 16 8 -1.7086 -5.4377 -3.9256 17 6 -1.3910 -6.8276 -4.1257 18 1 -0.7634 -7.0058 -4.9990 19 6 -2.6850 -7.6574 -4.1281 20 7 -3.0563 -7.8729 -2.7254 21 6 -4.2767 -8.2447 -2.2909 22 8 -4.4778 -8.3963 -1.1046 23 6 -5.3914 -8.4720 -3.2793 24 6 -6.6611 -8.8822 -2.5306 25 9 -7.6958 -9.0938 -3.4481 26 6 -1.8929 -7.6215 -1.8701 27 6 -0.7001 -7.1866 -2.7773 28 1 0.0746 -7.9471 -2.8751 29 6 0.8606 -3.0033 -1.3996 30 1 -0.4851 0.8399 -0.0004 31 1 0.4439 -2.5306 0.7312 32 1 2.1881 -4.2512 0.9635 33 1 3.1377 -3.5674 -0.4240 34 1 -3.4760 -7.1122 -4.6430 35 1 -2.5121 -8.6152 -4.6189 36 1 -5.5782 -7.5525 -3.8340 37 1 -5.1064 -9.2632 -3.9727 38 1 -6.4745 -9.8016 -1.9755 39 1 -6.9459 -8.0907 -1.8374 40 1 -2.1228 -6.8266 -1.1605 41 1 -1.6290 -8.5312 -1.3310 42 1 1.5094 -2.6303 -2.1921 43 1 -0.1981 -2.8792 -1.6274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269587027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:29 Heat of formation + Delta-G solvation = -68.005247 kcal Electronic energy + Delta-G solvation = -29248.933870 eV Core-core repulsion = 24825.614851 eV Total energy + Delta-G solvation = -4423.319019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.66229 -42.55173 -41.20196 -40.48389 -38.89408 -37.37593 -34.83593 -34.56979 -33.43207 -31.88040 -31.12560 -29.70516 -27.47148 -26.78544 -26.35011 -24.70887 -23.95811 -22.71662 -21.84230 -20.60653 -19.97601 -18.92857 -18.71078 -18.30920 -17.96377 -17.54638 -17.23853 -16.93154 -16.76174 -16.54416 -16.32132 -16.17714 -15.99774 -15.60570 -15.35907 -15.07490 -14.64832 -14.38502 -14.18607 -14.09374 -13.66280 -13.55545 -13.36231 -13.33186 -13.28082 -13.09138 -12.85835 -12.76973 -12.61961 -12.26856 -12.22006 -12.07384 -11.80670 -11.67374 -11.22948 -11.12200 -10.99903 -10.93553 -10.58088 -9.93747 -9.76729 -8.18251 -6.30372 -0.29839 1.33743 1.36941 1.46183 1.49607 1.56901 1.60275 1.78818 1.88849 2.44652 2.83079 2.90306 3.07637 3.11569 3.16584 3.40370 3.49292 3.58756 3.82788 3.89114 4.00119 4.12152 4.19498 4.23122 4.27546 4.35384 4.44182 4.48351 4.50131 4.53894 4.64105 4.65218 4.67858 4.75463 4.86644 4.91069 5.00426 5.01011 5.55490 5.78621 5.86653 6.18167 6.18926 6.53196 6.79618 6.81123 6.86383 7.40337 8.92037 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.002431 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.141212 B =11514.823437 C =12208.791783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.961 3.039 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.524 4.524 8 H 0.074 0.926 9 C 0.021 3.979 10 C 0.112 3.888 11 N -0.626 5.626 12 C 0.597 3.403 13 O -0.557 6.557 14 C 0.055 3.945 15 N -0.248 5.248 16 O -0.190 6.190 17 C 0.030 3.970 18 H 0.167 0.833 19 C 0.101 3.899 20 N -0.614 5.614 21 C 0.531 3.469 22 O -0.583 6.583 23 C -0.157 4.157 24 C 0.075 3.925 25 F -0.222 7.222 26 C 0.121 3.879 27 C -0.092 4.092 28 H 0.165 0.835 29 C 0.117 3.883 30 H 0.264 0.736 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.141 0.859 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -18.353 -13.805 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.786 3.214 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.563 4.563 8 H 0.092 0.908 9 C 0.002 3.998 10 C -0.009 4.009 11 N -0.359 5.359 12 C 0.384 3.616 13 O -0.436 6.436 14 C -0.140 4.140 15 N 0.010 4.990 16 O -0.213 6.213 17 C -0.028 4.028 18 H 0.184 0.816 19 C -0.021 4.021 20 N -0.348 5.348 21 C 0.322 3.678 22 O -0.462 6.462 23 C -0.196 4.196 24 C 0.019 3.981 25 F -0.204 7.204 26 C -0.004 4.004 27 C -0.114 4.114 28 H 0.182 0.818 29 C -0.005 4.005 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.158 0.842 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.514 -17.869 -13.181 23.140 hybrid contribution 0.260 0.446 0.499 0.718 sum -6.254 -17.423 -12.682 22.439 Atomic orbital electron populations 1.70086 1.07650 1.27848 1.50274 1.25833 0.95528 1.02873 0.94012 0.85454 0.79384 0.79137 0.77380 1.18291 1.20789 1.21067 1.21230 0.93530 0.90058 1.51432 0.90811 1.20305 0.94738 0.92246 0.92552 1.23387 0.94379 0.91260 0.91848 1.49983 1.41593 1.04806 1.39488 1.16697 0.81573 0.81630 0.81673 1.90771 1.57610 1.41013 1.54169 1.25828 0.96733 0.95566 0.95870 1.78711 0.98182 1.22588 0.99540 1.91254 1.48401 1.25245 1.56436 1.25216 0.97914 0.81496 0.98179 0.81582 1.22496 0.95987 1.01853 0.81727 1.48190 1.09555 1.67885 1.09132 1.20699 0.82357 0.75468 0.89295 1.90753 1.82351 1.53534 1.19611 1.22182 0.91676 1.07424 0.98340 1.21667 0.83280 1.03818 0.89302 1.92765 1.61040 1.96677 1.69876 1.21893 0.84206 1.01358 0.92937 1.23778 0.98085 0.95347 0.94144 0.81785 1.23523 0.99988 0.76038 1.00980 0.92707 0.94428 0.91201 0.88311 0.86849 0.84181 0.85700 0.84099 0.89564 0.90709 0.94504 0.89139 0.89742 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.39 13.26 21.44 0.28 -51.11 16 2 C 0.02 0.92 5.46 84.65 0.46 1.38 16 3 Si 0.96 40.77 29.54 68.60 2.03 42.80 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.52 -26.23 8.83 25.60 0.23 -26.00 16 8 H 0.07 3.50 7.81 -2.91 -0.02 3.47 16 9 C 0.02 0.99 3.79 -11.12 -0.04 0.95 16 10 C 0.11 4.44 8.17 83.18 0.68 5.12 16 11 N -0.63 -24.99 3.69 -861.51 -3.18 -28.17 16 12 C 0.60 22.23 8.07 86.71 0.70 22.93 16 13 O -0.56 -22.20 17.73 -3.88 -0.07 -22.27 16 14 C 0.05 1.68 6.26 45.79 0.29 1.96 16 15 N -0.25 -8.13 10.96 -42.25 -0.46 -8.59 16 16 O -0.19 -4.90 12.13 -38.34 -0.46 -5.36 16 17 C 0.03 0.43 4.85 31.77 0.15 0.58 16 18 H 0.17 1.14 8.14 -2.39 -0.02 1.12 16 19 C 0.10 0.91 6.23 86.59 0.54 1.45 16 20 N -0.61 -11.03 3.31 -813.70 -2.69 -13.73 16 21 C 0.53 10.64 7.83 87.66 0.69 11.33 16 22 O -0.58 -17.36 16.29 -3.02 -0.05 -17.41 16 23 C -0.16 -1.71 5.19 29.85 0.15 -1.56 16 24 C 0.07 1.08 6.84 71.98 0.49 1.58 16 25 F -0.22 -3.76 17.36 44.97 0.78 -2.98 16 26 C 0.12 2.83 6.49 87.42 0.57 3.39 16 27 C -0.09 -1.85 4.12 -9.21 -0.04 -1.89 16 28 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 29 C 0.12 5.05 7.34 83.27 0.61 5.66 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.04 2.00 8.11 -2.38 -0.02 1.98 16 32 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.10 3.55 8.10 -2.39 -0.02 3.53 16 34 H 0.11 0.73 7.62 -2.39 -0.02 0.71 16 35 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.12 1.02 7.87 -2.39 -0.02 1.00 16 37 H 0.14 0.62 8.14 -2.39 -0.02 0.61 16 38 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 39 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 40 H 0.04 1.16 7.66 -2.39 -0.02 1.14 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.08 3.53 8.10 -2.39 -0.02 3.51 16 43 H 0.05 2.53 7.47 -2.38 -0.02 2.51 16 Total: -1.00 -72.48 371.16 2.70 -69.78 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.04 Total: 10.14 kcal Atomic # 6 Polarization: 21.40 SS G_CDS: 5.48 Total: 26.88 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -6.05 Total: -101.59 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -0.58 Total: -45.04 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -72.48 2.70 -69.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269587027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.779 kcal (2) G-P(sol) polarization free energy of solvation -72.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds