Wall clock time and date at job start Tue Mar 31 2020 22:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99743 * 2 1 4 4 H 1.48500 * 109.46863 * 239.99756 * 3 2 1 5 5 H 1.48497 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47026 * 119.99921 * 3 2 1 7 7 C 1.38815 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99938 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99944 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47356 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47356 * 180.02562 * 11 10 9 13 13 C 1.46503 * 120.00128 * 269.99776 * 12 11 10 14 14 C 1.53004 * 109.47155 * 270.00171 * 13 12 11 15 15 O 1.42900 * 109.47091 * 64.99843 * 14 13 12 16 16 C 1.34777 * 120.00283 * 89.99438 * 12 11 10 17 17 O 1.21285 * 119.99764 * 0.02562 * 16 12 11 18 18 C 1.50702 * 120.00224 * 179.97438 * 16 12 11 19 19 C 1.50700 * 109.47043 * 180.02562 * 18 16 12 20 20 C 1.33644 * 122.74710 * 85.03045 * 19 18 16 21 21 S 1.76200 * 107.92352 * 179.73069 * 20 19 18 22 22 C 1.70979 * 90.28153 * 359.97438 * 21 20 19 23 23 C 1.50701 * 124.91569 * 180.02562 * 22 21 20 24 24 C 1.53002 * 117.49646 * 8.60029 * 23 22 21 25 25 C 1.53003 * 117.49678 * 299.97555 * 23 22 21 26 26 N 1.29028 * 110.16576 * 0.02562 * 22 21 20 27 27 H 0.96997 * 120.00188 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00385 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47604 * 59.99745 * 10 9 7 30 30 H 1.08999 * 109.47321 * 299.99643 * 10 9 7 31 31 H 1.09002 * 109.46942 * 59.99376 * 11 10 9 32 32 H 1.09007 * 109.46959 * 300.00037 * 11 10 9 33 33 H 1.09001 * 109.46766 * 29.99632 * 13 12 11 34 34 H 1.08994 * 109.47314 * 149.99369 * 13 12 11 35 35 H 1.08998 * 109.46688 * 184.99672 * 14 13 12 36 36 H 1.09000 * 109.46905 * 304.99750 * 14 13 12 37 37 H 0.96697 * 114.00136 * 180.02562 * 15 14 13 38 38 H 1.08999 * 109.46565 * 60.00220 * 18 16 12 39 39 H 1.08999 * 109.46915 * 300.00707 * 18 16 12 40 40 H 1.08001 * 126.03803 * 359.72486 * 20 19 18 41 41 H 1.08994 * 115.54881 * 154.30676 * 23 22 21 42 42 H 1.08991 * 117.50122 * 359.97438 * 24 23 22 43 43 H 1.08994 * 117.49679 * 145.02323 * 24 23 22 44 44 H 1.08995 * 117.49838 * 214.97384 * 25 23 22 45 45 H 1.09001 * 117.50034 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0021 12 7 1.7965 -6.0884 0.0038 13 6 2.1636 -6.7240 -1.2640 14 6 1.0422 -7.6666 -1.7056 15 8 -0.1342 -6.9068 -1.9903 16 6 2.1327 -6.6709 1.1718 17 8 1.8284 -6.1449 2.2214 18 6 2.8857 -7.9763 1.1736 19 6 3.1355 -8.4101 2.5950 20 6 2.2395 -9.0982 3.3089 21 16 2.9324 -9.4028 4.9001 22 6 4.3583 -8.5753 4.4469 23 6 5.5587 -8.3749 5.3356 24 6 5.5822 -9.1224 6.6704 25 6 5.3491 -7.6104 6.6442 26 7 4.2577 -8.1473 3.2338 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6842 -3.7141 0.8921 30 1 2.6854 -3.7149 -0.8878 31 1 0.4376 -4.7625 -0.8882 32 1 0.4369 -4.7614 0.8918 33 1 2.3145 -5.9577 -2.0243 34 1 3.0848 -7.2917 -1.1326 35 1 1.3521 -8.2056 -2.6008 36 1 0.8307 -8.3785 -0.9077 37 1 -0.8877 -7.4410 -2.2765 38 1 3.8384 -7.8467 0.6601 39 1 2.2966 -8.7362 0.6602 40 1 1.2631 -9.4121 2.9704 41 1 6.5084 -8.2371 4.8188 42 1 4.7292 -9.7588 6.9059 43 1 6.5475 -9.4766 7.0319 44 1 6.1611 -6.9700 6.9886 45 1 4.3430 -7.2520 6.8622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272271829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:46 Heat of formation + Delta-G solvation = 5.940811 kcal Electronic energy + Delta-G solvation = -26683.086683 eV Core-core repulsion = 22829.187382 eV Total energy + Delta-G solvation = -3853.899302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.51312 -39.41373 -37.52717 -37.12855 -35.50722 -34.26716 -32.34925 -31.27747 -29.47703 -28.72558 -26.96547 -25.80174 -23.61894 -23.17379 -22.81559 -21.83276 -21.20457 -20.01487 -18.93139 -17.91555 -17.76934 -17.08996 -16.81098 -16.46193 -16.13953 -15.32061 -15.05472 -14.67585 -14.48238 -14.37534 -14.11760 -13.78307 -13.50884 -13.45096 -13.29884 -13.01681 -12.64548 -12.62664 -12.43299 -12.27286 -11.99198 -11.61752 -11.42355 -11.13933 -11.11040 -10.92357 -10.85237 -10.81853 -10.53697 -10.20353 -10.07275 -9.78832 -9.73434 -9.60419 -9.46192 -8.78576 -8.77273 -8.42927 -6.83229 -5.67225 -2.95837 0.53817 1.18025 1.55712 2.49825 2.77536 3.16345 3.45174 3.50864 3.54284 3.56294 3.72658 4.06883 4.39563 4.51279 4.52923 4.57111 4.69017 4.79559 4.88206 4.95716 4.99908 5.10126 5.13520 5.19785 5.22772 5.32591 5.45279 5.54951 5.62450 5.63741 5.65039 5.71450 5.84181 5.96753 6.02511 6.17199 6.31730 6.66593 6.86662 7.05424 7.45675 7.60996 7.63218 7.78106 8.35520 8.51612 9.62047 10.19754 10.55176 11.55820 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009672 B = 0.002817 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.134307 B = 9937.957382 C =12195.067545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.114 3.886 12 N -0.599 5.599 13 C 0.104 3.896 14 C 0.058 3.942 15 O -0.561 6.561 16 C 0.513 3.487 17 O -0.523 6.523 18 C -0.068 4.068 19 C 0.094 3.906 20 C -0.246 4.246 21 S 0.118 5.882 22 C 0.083 3.917 23 C -0.086 4.086 24 C -0.170 4.170 25 C -0.158 4.158 26 N -0.460 5.460 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.020 0.980 30 H 0.016 0.984 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.377 0.623 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.175 0.825 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 -28.619 5.028 29.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.014 3.986 11 C -0.008 4.008 12 N -0.332 5.332 13 C -0.020 4.020 14 C -0.021 4.021 15 O -0.366 6.366 16 C 0.299 3.701 17 O -0.398 6.398 18 C -0.111 4.111 19 C -0.038 4.038 20 C -0.385 4.385 21 S 0.374 5.626 22 C -0.195 4.195 23 C -0.107 4.107 24 C -0.208 4.208 25 C -0.197 4.197 26 N -0.174 5.174 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.223 0.777 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.193 0.807 41 H 0.151 0.849 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.548 -27.934 6.434 29.642 hybrid contribution -0.401 0.748 -1.246 1.508 sum 7.147 -27.186 5.188 28.585 Atomic orbital electron populations 1.69655 1.05082 1.25678 1.57910 1.24740 0.95549 0.97639 1.03161 0.86241 0.78485 0.83495 0.77829 1.21303 1.21673 1.21275 1.19174 0.90963 0.84060 1.42501 0.91318 1.42195 1.05863 0.99785 1.89549 1.20913 0.93976 0.85867 0.97823 1.21695 0.94488 0.81043 1.03616 1.47773 1.57069 1.23500 1.04842 1.21732 0.95800 0.97485 0.86966 1.22705 0.87024 0.93718 0.98686 1.86611 1.22397 1.37502 1.90103 1.20299 0.79847 0.86081 0.83850 1.90757 1.53579 1.64605 1.30870 1.20288 1.02584 0.96213 0.91992 1.19415 0.89079 0.98093 0.97192 1.26714 1.05469 1.09634 0.96720 1.83714 1.10952 1.53027 1.14949 1.25998 0.98798 1.00479 0.94214 1.20406 0.95304 1.07182 0.87857 1.23141 1.04096 0.95299 0.98231 1.23164 1.04286 0.94413 0.97861 1.65877 1.24176 1.20366 1.06973 0.93507 0.78257 0.96201 0.96611 0.89471 0.90219 0.88804 0.88979 0.92702 0.93789 0.77668 0.87053 0.87570 0.80721 0.84885 0.88400 0.87263 0.87321 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.62 13.06 55.49 0.72 -28.90 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 23.50 29.55 -169.99 -5.02 18.47 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.24 -7.09 9.99 -15.06 -0.15 -7.24 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -20.24 5.60 -59.91 -0.34 -20.57 16 10 C 0.14 3.28 6.58 -4.04 -0.03 3.25 16 11 C 0.11 2.16 5.34 -4.04 -0.02 2.14 16 12 N -0.60 -8.96 2.44 -173.68 -0.42 -9.38 16 13 C 0.10 1.08 5.62 -4.04 -0.02 1.06 16 14 C 0.06 0.48 7.38 37.16 0.27 0.75 16 15 O -0.56 -5.98 12.48 -35.23 -0.44 -6.42 16 16 C 0.51 8.12 7.67 -10.98 -0.08 8.04 16 17 O -0.52 -10.90 15.61 5.55 0.09 -10.81 16 18 C -0.07 -0.77 4.67 -29.03 -0.14 -0.90 16 19 C 0.09 1.25 5.23 -84.23 -0.44 0.81 16 20 C -0.25 -2.84 11.14 29.12 0.32 -2.52 16 21 S 0.12 1.21 21.94 -107.50 -2.36 -1.15 16 22 C 0.08 1.00 7.04 -13.46 -0.09 0.91 16 23 C -0.09 -0.80 6.33 -91.77 -0.58 -1.38 16 24 C -0.17 -1.12 10.01 -26.72 -0.27 -1.38 16 25 C -0.16 -1.28 10.23 -26.72 -0.27 -1.55 16 26 N -0.46 -6.64 10.53 -8.06 -0.08 -6.72 16 27 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 28 H 0.38 11.06 7.67 -40.82 -0.31 10.74 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 1.63 7.12 -51.93 -0.37 1.26 16 32 H 0.08 1.69 7.42 -51.93 -0.39 1.31 16 33 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 34 H 0.09 0.67 6.44 -51.93 -0.33 0.34 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.04 0.32 7.30 -51.93 -0.38 -0.06 16 37 H 0.38 2.31 9.12 45.56 0.42 2.72 16 38 H 0.11 1.10 7.40 -51.93 -0.38 0.72 16 39 H 0.11 0.80 7.26 -51.93 -0.38 0.43 16 40 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 0.61 7.22 -51.93 -0.38 0.24 16 43 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 391.49 15.07 5.90 5.90 Total: -1.00 -39.49 391.49 -9.40 -48.89 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.85 Total: 9.27 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.60 Total: 1.42 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -0.12 Total: -65.57 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.35 Total: -17.24 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.47 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.36 Total: -1.15 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.49 -9.40 -48.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272271829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.828 kcal (2) G-P(sol) polarization free energy of solvation -39.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds