Wall clock time and date at job start Tue Mar 31 2020 22:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99743 * 2 1 4 4 H 1.48500 * 109.46863 * 239.99756 * 3 2 1 5 5 H 1.48497 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47026 * 119.99921 * 3 2 1 7 7 C 1.38815 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99938 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99944 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47356 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47356 * 180.02562 * 11 10 9 13 13 C 1.46503 * 120.00128 * 269.99776 * 12 11 10 14 14 C 1.53004 * 109.47155 * 270.00171 * 13 12 11 15 15 O 1.42900 * 109.47091 * 64.99843 * 14 13 12 16 16 C 1.34777 * 120.00283 * 89.99438 * 12 11 10 17 17 O 1.21285 * 119.99764 * 0.02562 * 16 12 11 18 18 C 1.50702 * 120.00224 * 179.97438 * 16 12 11 19 19 C 1.50700 * 109.47043 * 180.02562 * 18 16 12 20 20 C 1.33644 * 122.74710 * 85.03045 * 19 18 16 21 21 S 1.76200 * 107.92352 * 179.73069 * 20 19 18 22 22 C 1.70979 * 90.28153 * 359.97438 * 21 20 19 23 23 C 1.50701 * 124.91569 * 180.02562 * 22 21 20 24 24 C 1.53002 * 117.49646 * 8.60029 * 23 22 21 25 25 C 1.53003 * 117.49678 * 299.97555 * 23 22 21 26 26 N 1.29028 * 110.16576 * 0.02562 * 22 21 20 27 27 H 0.96997 * 120.00188 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00385 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47604 * 59.99745 * 10 9 7 30 30 H 1.08999 * 109.47321 * 299.99643 * 10 9 7 31 31 H 1.09002 * 109.46942 * 59.99376 * 11 10 9 32 32 H 1.09007 * 109.46959 * 300.00037 * 11 10 9 33 33 H 1.09001 * 109.46766 * 29.99632 * 13 12 11 34 34 H 1.08994 * 109.47314 * 149.99369 * 13 12 11 35 35 H 1.08998 * 109.46688 * 184.99672 * 14 13 12 36 36 H 1.09000 * 109.46905 * 304.99750 * 14 13 12 37 37 H 0.96697 * 114.00136 * 180.02562 * 15 14 13 38 38 H 1.08999 * 109.46565 * 60.00220 * 18 16 12 39 39 H 1.08999 * 109.46915 * 300.00707 * 18 16 12 40 40 H 1.08001 * 126.03803 * 359.72486 * 20 19 18 41 41 H 1.08994 * 115.54881 * 154.30676 * 23 22 21 42 42 H 1.08991 * 117.50122 * 359.97438 * 24 23 22 43 43 H 1.08994 * 117.49679 * 145.02323 * 24 23 22 44 44 H 1.08995 * 117.49838 * 214.97384 * 25 23 22 45 45 H 1.09001 * 117.50034 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0021 12 7 1.7965 -6.0884 0.0038 13 6 2.1636 -6.7240 -1.2640 14 6 1.0422 -7.6666 -1.7056 15 8 -0.1342 -6.9068 -1.9903 16 6 2.1327 -6.6709 1.1718 17 8 1.8284 -6.1449 2.2214 18 6 2.8857 -7.9763 1.1736 19 6 3.1355 -8.4101 2.5950 20 6 2.2395 -9.0982 3.3089 21 16 2.9324 -9.4028 4.9001 22 6 4.3583 -8.5753 4.4469 23 6 5.5587 -8.3749 5.3356 24 6 5.5822 -9.1224 6.6704 25 6 5.3491 -7.6104 6.6442 26 7 4.2577 -8.1473 3.2338 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6842 -3.7141 0.8921 30 1 2.6854 -3.7149 -0.8878 31 1 0.4376 -4.7625 -0.8882 32 1 0.4369 -4.7614 0.8918 33 1 2.3145 -5.9577 -2.0243 34 1 3.0848 -7.2917 -1.1326 35 1 1.3521 -8.2056 -2.6008 36 1 0.8307 -8.3785 -0.9077 37 1 -0.8877 -7.4410 -2.2765 38 1 3.8384 -7.8467 0.6601 39 1 2.2966 -8.7362 0.6602 40 1 1.2631 -9.4121 2.9704 41 1 6.5084 -8.2371 4.8188 42 1 4.7292 -9.7588 6.9059 43 1 6.5475 -9.4766 7.0319 44 1 6.1611 -6.9700 6.9886 45 1 4.3430 -7.2520 6.8622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272271829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:45 Heat of formation + Delta-G solvation = -24.560096 kcal Electronic energy + Delta-G solvation = -26684.409302 eV Core-core repulsion = 22829.187382 eV Total energy + Delta-G solvation = -3855.221920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54644 -40.46185 -38.25132 -37.98190 -37.08808 -35.89133 -33.76243 -32.87644 -30.80434 -29.70380 -28.44370 -26.69112 -25.58142 -24.00161 -23.45483 -23.36711 -22.26907 -20.95859 -20.09235 -19.22160 -18.75636 -18.58461 -17.80127 -17.52563 -17.11596 -16.66231 -16.37467 -15.86000 -15.56652 -15.43957 -15.29970 -15.13546 -15.02274 -14.81674 -14.58234 -14.25847 -13.87816 -13.55436 -13.31299 -13.16360 -13.08006 -12.88405 -12.74957 -12.57965 -12.49067 -12.28755 -12.18950 -12.10155 -11.90309 -11.83115 -11.52987 -11.01172 -11.00412 -10.79893 -10.66823 -10.32979 -9.72042 -9.61698 -9.10567 -8.00109 -5.31830 -0.31505 0.36687 0.70471 1.42818 1.48167 1.52072 1.54963 1.59204 2.07601 2.53678 2.75636 3.02809 3.32082 3.45796 3.53568 3.70451 3.78821 3.96601 4.01767 4.05240 4.13654 4.19443 4.19683 4.28460 4.33925 4.37829 4.44543 4.52834 4.59165 4.68778 4.68830 4.72459 4.86852 4.93107 5.01480 5.03663 5.05149 5.13705 5.14022 5.38775 5.52836 6.20734 6.40144 6.76363 7.01281 7.14854 7.26314 7.97460 8.24121 9.23255 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009672 B = 0.002817 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.134307 B = 9937.957382 C =12195.067545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.981 3.019 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.255 4.255 8 H 0.072 0.928 9 N -0.742 5.742 10 C 0.151 3.849 11 C 0.135 3.865 12 N -0.595 5.595 13 C 0.092 3.908 14 C 0.059 3.941 15 O -0.596 6.596 16 C 0.508 3.492 17 O -0.584 6.584 18 C -0.056 4.056 19 C 0.068 3.932 20 C -0.257 4.257 21 S 0.156 5.844 22 C 0.065 3.935 23 C -0.109 4.109 24 C -0.143 4.143 25 C -0.166 4.166 26 N -0.499 5.499 27 H 0.255 0.745 28 H 0.375 0.625 29 H -0.006 1.006 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.394 0.606 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.195 0.805 41 H 0.134 0.866 42 H 0.102 0.898 43 H 0.134 0.866 44 H 0.121 0.879 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 -30.588 4.549 32.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.809 3.191 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.011 3.989 12 N -0.327 5.327 13 C -0.029 4.029 14 C -0.020 4.020 15 O -0.404 6.404 16 C 0.297 3.703 17 O -0.463 6.463 18 C -0.098 4.098 19 C -0.064 4.064 20 C -0.396 4.396 21 S 0.412 5.588 22 C -0.212 4.212 23 C -0.131 4.131 24 C -0.181 4.181 25 C -0.205 4.205 26 N -0.214 5.214 27 H 0.063 0.937 28 H 0.207 0.793 29 H 0.012 0.988 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.147 0.853 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.244 0.756 38 H 0.146 0.854 39 H 0.168 0.832 40 H 0.212 0.788 41 H 0.152 0.848 42 H 0.120 0.880 43 H 0.152 0.848 44 H 0.140 0.860 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.819 -29.971 5.912 31.796 hybrid contribution -0.790 1.302 -1.061 1.856 sum 8.029 -28.669 4.850 30.165 Atomic orbital electron populations 1.69823 1.06692 1.26494 1.58806 1.25677 0.96562 1.01351 1.02980 0.85113 0.77229 0.78507 0.78297 1.19798 1.21463 1.20615 1.19563 0.91368 0.85273 1.42467 0.91045 1.42381 1.05618 1.00984 1.89564 1.20938 0.94373 0.85664 0.96738 1.21175 0.93432 0.82024 1.02285 1.47838 1.56167 1.21941 1.06782 1.22183 0.98551 0.97901 0.84291 1.22789 0.85529 0.92972 1.00685 1.86552 1.23926 1.39477 1.90444 1.21166 0.79044 0.87174 0.82890 1.90726 1.56052 1.66504 1.33066 1.20349 1.03158 0.94287 0.91987 1.19742 0.89388 0.98985 0.98271 1.27090 1.06079 1.09142 0.97291 1.83465 1.09573 1.51798 1.13976 1.26506 1.00205 1.00288 0.94185 1.20567 0.94585 1.09511 0.88449 1.23261 1.05492 0.94096 0.95252 1.23231 1.04054 0.96023 0.97157 1.65913 1.25430 1.21770 1.08294 0.93674 0.79341 0.98798 0.95464 0.89023 0.93135 0.89921 0.85289 0.89213 0.92288 0.75627 0.85409 0.83213 0.78753 0.84793 0.87986 0.84784 0.86044 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.44 13.06 21.65 0.28 -62.16 16 2 C -0.07 -4.48 5.50 84.86 0.47 -4.02 16 3 Si 0.98 48.57 29.55 68.60 2.03 50.60 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.26 -15.62 9.99 84.03 0.84 -14.78 16 8 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.74 -42.55 5.60 -343.45 -1.92 -44.48 16 10 C 0.15 7.15 6.58 86.38 0.57 7.72 16 11 C 0.13 5.30 5.34 86.38 0.46 5.76 16 12 N -0.60 -17.57 2.44 -821.79 -2.00 -19.57 16 13 C 0.09 1.71 5.62 86.38 0.49 2.20 16 14 C 0.06 0.78 7.38 71.98 0.53 1.31 16 15 O -0.60 -11.72 12.48 -148.98 -1.86 -13.58 16 16 C 0.51 16.01 7.67 87.66 0.67 16.68 16 17 O -0.58 -25.30 15.61 -3.04 -0.05 -25.35 16 18 C -0.06 -1.16 4.67 29.10 0.14 -1.02 16 19 C 0.07 1.75 5.23 41.52 0.22 1.96 16 20 C -0.26 -5.66 11.14 66.78 0.74 -4.91 16 21 S 0.16 3.06 21.94 -56.49 -1.24 1.82 16 22 C 0.07 1.57 7.04 88.52 0.62 2.19 16 23 C -0.11 -1.99 6.33 -11.54 -0.07 -2.07 16 24 C -0.14 -1.63 10.01 30.60 0.31 -1.32 16 25 C -0.17 -2.58 10.23 30.60 0.31 -2.27 16 26 N -0.50 -14.42 10.53 -179.40 -1.89 -16.31 16 27 H 0.25 15.73 8.31 -92.71 -0.77 14.96 16 28 H 0.37 22.48 7.67 -92.71 -0.71 21.77 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 3.52 7.12 -2.39 -0.02 3.50 16 32 H 0.05 2.27 7.42 -2.38 -0.02 2.26 16 33 H 0.08 1.75 8.07 -2.39 -0.02 1.73 16 34 H 0.13 1.42 6.44 -2.39 -0.02 1.40 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.62 7.30 -2.39 -0.02 0.61 16 37 H 0.39 4.15 9.12 -74.06 -0.68 3.48 16 38 H 0.13 2.21 7.40 -2.39 -0.02 2.19 16 39 H 0.15 1.69 7.26 -2.39 -0.02 1.67 16 40 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.13 2.32 8.14 -2.39 -0.02 2.31 16 42 H 0.10 1.08 7.22 -2.39 -0.02 1.06 16 43 H 0.13 0.87 8.14 -2.39 -0.02 0.86 16 44 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -89.38 391.49 -0.72 -90.10 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.36 Total: 31.49 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.29 Total: 7.43 kcal Atomic # 7 Polarization: -136.98 SS G_CDS: -5.53 Total: -142.52 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.91 Total: -38.93 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.24 Total: 1.82 kcal Total: -89.38 -0.72 -90.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272271829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.540 kcal (2) G-P(sol) polarization free energy of solvation -89.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds