Wall clock time and date at job start Tue Mar 31 2020 23:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38665 * 120.42078 * 2 1 4 4 C 1.38629 * 118.42256 * 180.24138 * 3 2 1 5 5 C 1.38233 * 119.15886 * 359.75115 * 4 3 2 6 6 N 1.31849 * 120.76060 * 359.97438 * 5 4 3 7 7 C 1.31885 * 121.73293 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.62172 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.46722 * 90.00210 * 8 7 6 10 10 C 1.46900 * 110.99888 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47407 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47269 * 305.00036 * 11 10 9 13 13 O 1.42903 * 109.46459 * 64.99929 * 11 10 9 14 14 C 1.53001 * 109.47376 * 184.99739 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21276 * 119.99934 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99567 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.46548 * 179.97438 * 18 16 15 20 20 C 1.76208 * 99.99641 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99843 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99639 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00457 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99706 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46901 * 60.00207 * 24 22 20 26 26 H 1.48504 * 109.46851 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46944 * 300.00164 * 24 22 20 28 28 H 1.08995 * 109.46918 * 270.25719 * 1 2 3 29 29 H 1.08999 * 109.46869 * 30.25552 * 1 2 3 30 30 H 1.08993 * 109.46937 * 150.25042 * 1 2 3 31 31 H 1.08003 * 120.78883 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.42329 * 179.72797 * 4 3 2 33 33 H 1.07995 * 119.61592 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.47000 * 330.00246 * 8 7 6 35 35 H 1.08992 * 109.47389 * 209.99752 * 8 7 6 36 36 H 1.00897 * 111.00315 * 56.04381 * 9 8 7 37 37 H 1.09005 * 109.47208 * 59.99899 * 10 9 8 38 38 H 1.08999 * 109.46786 * 299.99678 * 10 9 8 39 39 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 40 40 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 41 41 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 42 42 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 43 43 H 1.08998 * 109.47167 * 299.99565 * 18 16 15 44 44 H 1.09001 * 109.47098 * 60.00477 * 18 16 15 45 45 H 0.96996 * 120.00031 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 -0.0051 5 6 4.2256 -0.0825 -0.0048 6 7 3.5254 -1.1997 0.0008 7 6 2.2066 -1.1917 0.0058 8 6 1.4539 -2.4972 0.0115 9 7 1.2146 -2.9182 1.3984 10 6 0.4818 -4.1906 1.4433 11 6 0.2523 -4.5960 2.9007 12 1 1.2079 -4.6262 3.4242 13 8 -0.6060 -3.6429 3.5306 14 6 -0.3994 -5.9794 2.9488 15 7 -0.6196 -6.3672 4.3442 16 6 -1.1858 -7.5561 4.6319 17 8 -1.5133 -8.3044 3.7356 18 6 -1.4117 -7.9552 6.0674 19 16 -2.1829 -9.5918 6.1242 20 6 -2.3271 -9.8016 7.8678 21 1 -1.9806 -9.0267 8.5354 22 6 -2.8871 -10.9624 8.3830 23 7 -3.3100 -11.9067 7.5693 24 14 -3.0407 -11.1846 10.2315 25 1 -3.8853 -10.0993 10.7919 26 1 -3.6678 -12.4991 10.5216 27 1 -1.6918 -11.1316 10.8501 28 1 -0.3633 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6890 2.1423 0.0004 32 1 4.1736 2.0591 -0.0097 33 1 5.3046 -0.1287 -0.0084 34 1 2.0415 -3.2576 -0.5028 35 1 0.4995 -2.3686 -0.4989 36 1 0.7272 -2.2015 1.9150 37 1 1.0630 -4.9627 0.9390 38 1 -0.4794 -4.0741 0.9426 39 1 -1.4762 -3.5629 3.1164 40 1 -1.3550 -5.9493 2.4253 41 1 0.2553 -6.7064 2.4682 42 1 -0.3572 -5.7688 5.0611 43 1 -0.4561 -7.9851 6.5910 44 1 -2.0668 -7.2285 6.5479 45 1 -3.7016 -12.7177 7.9294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272371471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:49 Heat of formation + Delta-G solvation = -58.206026 kcal Electronic energy + Delta-G solvation = -25211.152505 eV Core-core repulsion = 21354.471588 eV Total energy + Delta-G solvation = -3856.680917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83044 -39.45488 -38.20099 -36.03330 -34.10421 -34.04389 -32.66185 -32.41235 -30.61408 -29.02833 -27.90181 -26.50161 -25.46178 -24.06565 -22.96016 -22.11099 -21.79008 -20.27402 -17.92360 -17.53357 -17.32001 -16.86423 -16.52420 -16.27394 -15.84413 -15.43245 -15.20378 -15.07964 -14.78681 -14.59335 -14.34118 -14.18278 -13.86224 -13.58543 -13.45740 -13.19218 -13.05244 -13.01335 -12.94899 -12.55818 -12.51593 -12.23624 -11.77283 -11.72586 -11.28781 -11.03007 -11.02283 -10.77079 -10.49870 -10.18383 -9.82051 -9.80112 -9.41102 -9.30808 -9.04931 -8.91274 -8.85118 -8.22694 -6.48509 -6.20007 -3.90652 0.60929 0.83203 2.97318 3.10468 3.21006 3.25099 3.29171 3.33160 3.61612 3.80050 3.96862 4.09074 4.21501 4.22268 4.30992 4.38644 4.53028 4.57276 4.67092 4.72306 4.84879 4.94985 5.01462 5.08833 5.14994 5.15710 5.18632 5.20848 5.27274 5.32103 5.50226 5.54496 5.69955 5.73005 5.76251 5.81688 5.92347 6.17126 6.23813 6.43195 6.60849 6.90744 7.25682 7.60966 7.61035 7.73300 8.36784 8.62060 9.25219 10.87375 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033149 B = 0.001459 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.475153 B =19189.020257 C =19345.475583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.132 4.132 3 C -0.078 4.078 4 C -0.170 4.170 5 C 0.094 3.906 6 N -0.463 5.463 7 C 0.132 3.868 8 C 0.105 3.895 9 N -0.674 5.674 10 C 0.032 3.968 11 C 0.098 3.902 12 H 0.116 0.884 13 O -0.557 6.557 14 C 0.092 3.908 15 N -0.732 5.732 16 C 0.532 3.468 17 O -0.520 6.520 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.347 0.653 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.374 0.626 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.403 0.597 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.582 29.045 -17.180 35.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.134 4.134 3 C -0.104 4.104 4 C -0.190 4.190 5 C -0.063 4.063 6 N -0.172 5.172 7 C -0.007 4.007 8 C -0.024 4.024 9 N -0.306 5.306 10 C -0.098 4.098 11 C 0.038 3.962 12 H 0.134 0.866 13 O -0.362 6.362 14 C -0.034 4.034 15 N -0.388 5.388 16 C 0.318 3.682 17 O -0.395 6.395 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.173 0.827 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.166 0.834 37 H 0.107 0.893 38 H 0.057 0.943 39 H 0.222 0.778 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.238 0.762 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.520 26.563 -18.256 34.228 hybrid contribution -1.221 2.138 1.867 3.090 sum 10.299 28.701 -16.389 34.618 Atomic orbital electron populations 1.20856 0.90297 1.03331 1.02938 1.20765 0.97512 0.93738 1.01431 1.21479 0.94235 0.98032 0.96625 1.22176 0.95293 0.99762 1.01815 1.22786 1.00424 0.87582 0.95521 1.67487 1.07646 1.31416 1.10610 1.20910 0.89848 0.94002 0.95896 1.20832 0.97718 0.93200 0.90675 1.60296 1.52728 1.05583 1.12031 1.22588 0.97184 0.93065 0.97012 1.22238 0.94584 0.86513 0.92821 0.86634 1.86625 1.28852 1.61623 1.59065 1.21879 1.01142 0.95803 0.84564 1.45852 1.65050 1.20182 1.07689 1.20329 0.76244 0.80367 0.91272 1.90697 1.49310 1.51102 1.48384 1.23526 1.05296 1.06760 0.94771 1.85371 1.77562 1.11041 1.09453 1.22840 1.47396 1.06723 0.91492 0.90946 1.24986 0.94622 0.94818 0.99101 1.70009 1.38194 1.07223 1.34915 0.86223 0.78550 0.77566 0.83156 1.19949 1.20813 1.19927 0.90553 0.91112 0.90950 0.84851 0.84754 0.82676 0.89066 0.93077 0.83380 0.89286 0.94318 0.77844 0.91443 0.90579 0.76244 0.89175 0.89179 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 9.62 36.01 0.35 -0.15 16 2 C -0.13 -0.87 5.90 -104.48 -0.62 -1.49 16 3 C -0.08 -0.45 9.86 -39.28 -0.39 -0.84 16 4 C -0.17 -0.98 10.11 -39.44 -0.40 -1.38 16 5 C 0.09 0.70 11.18 -17.55 -0.20 0.50 16 6 N -0.46 -4.53 10.27 -9.47 -0.10 -4.62 16 7 C 0.13 1.10 6.29 -82.59 -0.52 0.58 16 8 C 0.10 0.75 5.58 -4.98 -0.03 0.72 16 9 N -0.67 -5.08 6.49 -115.06 -0.75 -5.82 16 10 C 0.03 0.21 5.36 -3.82 -0.02 0.19 16 11 C 0.10 0.78 3.29 -26.73 -0.09 0.69 16 12 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 13 O -0.56 -4.41 12.60 -35.23 -0.44 -4.86 16 14 C 0.09 0.97 5.34 -4.04 -0.02 0.95 16 15 N -0.73 -9.75 5.45 -60.30 -0.33 -10.07 16 16 C 0.53 9.96 7.85 -10.98 -0.09 9.87 16 17 O -0.52 -11.81 15.86 5.56 0.09 -11.72 16 18 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 24 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 30 H 0.07 0.28 5.95 -51.93 -0.31 -0.03 16 31 H 0.13 0.47 8.06 -52.48 -0.42 0.04 16 32 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 33 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.28 5.93 -51.93 -0.31 -0.03 16 36 H 0.35 2.55 8.28 -39.29 -0.33 2.23 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.37 1.94 9.05 45.56 0.41 2.36 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.40 4.57 8.35 -40.82 -0.34 4.23 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -36.82 396.10 -9.57 -46.39 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.91 Total: 4.02 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.60 Total: -6.34 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.44 Total: -46.08 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.36 Total: -16.57 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.82 -9.57 -46.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272371471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.816 kcal (2) G-P(sol) polarization free energy of solvation -36.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds