Wall clock time and date at job start Tue Mar 31 2020 23:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38665 * 120.42078 * 2 1 4 4 C 1.38629 * 118.42256 * 180.24138 * 3 2 1 5 5 C 1.38233 * 119.15886 * 359.75115 * 4 3 2 6 6 N 1.31849 * 120.76060 * 359.97438 * 5 4 3 7 7 C 1.31885 * 121.73293 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.62172 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.46722 * 90.00210 * 8 7 6 10 10 C 1.46900 * 110.99888 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47407 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47269 * 305.00036 * 11 10 9 13 13 O 1.42903 * 109.46459 * 64.99929 * 11 10 9 14 14 C 1.53001 * 109.47376 * 184.99739 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21276 * 119.99934 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99567 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.46548 * 179.97438 * 18 16 15 20 20 C 1.76208 * 99.99641 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99843 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99639 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00457 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99706 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46901 * 60.00207 * 24 22 20 26 26 H 1.48504 * 109.46851 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46944 * 300.00164 * 24 22 20 28 28 H 1.08995 * 109.46918 * 270.25719 * 1 2 3 29 29 H 1.08999 * 109.46869 * 30.25552 * 1 2 3 30 30 H 1.08993 * 109.46937 * 150.25042 * 1 2 3 31 31 H 1.08003 * 120.78883 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.42329 * 179.72797 * 4 3 2 33 33 H 1.07995 * 119.61592 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.47000 * 330.00246 * 8 7 6 35 35 H 1.08992 * 109.47389 * 209.99752 * 8 7 6 36 36 H 1.00897 * 111.00315 * 56.04381 * 9 8 7 37 37 H 1.09005 * 109.47208 * 59.99899 * 10 9 8 38 38 H 1.08999 * 109.46786 * 299.99678 * 10 9 8 39 39 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 40 40 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 41 41 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 42 42 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 43 43 H 1.08998 * 109.47167 * 299.99565 * 18 16 15 44 44 H 1.09001 * 109.47098 * 60.00477 * 18 16 15 45 45 H 0.96996 * 120.00031 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 -0.0051 5 6 4.2256 -0.0825 -0.0048 6 7 3.5254 -1.1997 0.0008 7 6 2.2066 -1.1917 0.0058 8 6 1.4539 -2.4972 0.0115 9 7 1.2146 -2.9182 1.3984 10 6 0.4818 -4.1906 1.4433 11 6 0.2523 -4.5960 2.9007 12 1 1.2079 -4.6262 3.4242 13 8 -0.6060 -3.6429 3.5306 14 6 -0.3994 -5.9794 2.9488 15 7 -0.6196 -6.3672 4.3442 16 6 -1.1858 -7.5561 4.6319 17 8 -1.5133 -8.3044 3.7356 18 6 -1.4117 -7.9552 6.0674 19 16 -2.1829 -9.5918 6.1242 20 6 -2.3271 -9.8016 7.8678 21 1 -1.9806 -9.0267 8.5354 22 6 -2.8871 -10.9624 8.3830 23 7 -3.3100 -11.9067 7.5693 24 14 -3.0407 -11.1846 10.2315 25 1 -3.8853 -10.0993 10.7919 26 1 -3.6678 -12.4991 10.5216 27 1 -1.6918 -11.1316 10.8501 28 1 -0.3633 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6890 2.1423 0.0004 32 1 4.1736 2.0591 -0.0097 33 1 5.3046 -0.1287 -0.0084 34 1 2.0415 -3.2576 -0.5028 35 1 0.4995 -2.3686 -0.4989 36 1 0.7272 -2.2015 1.9150 37 1 1.0630 -4.9627 0.9390 38 1 -0.4794 -4.0741 0.9426 39 1 -1.4762 -3.5629 3.1164 40 1 -1.3550 -5.9493 2.4253 41 1 0.2553 -6.7064 2.4682 42 1 -0.3572 -5.7688 5.0611 43 1 -0.4561 -7.9851 6.5910 44 1 -2.0668 -7.2285 6.5479 45 1 -3.7016 -12.7177 7.9294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272371471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:49 Heat of formation + Delta-G solvation = -88.643740 kcal Electronic energy + Delta-G solvation = -25212.472384 eV Core-core repulsion = 21354.471588 eV Total energy + Delta-G solvation = -3858.000796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30890 -40.72061 -39.07991 -36.64224 -35.27607 -34.57899 -34.49280 -33.18193 -31.74193 -30.11696 -28.41352 -27.69661 -27.10808 -24.81658 -23.42797 -22.76554 -22.31887 -21.66304 -19.85292 -18.23003 -17.94825 -17.80086 -17.45002 -17.25451 -16.87436 -16.59776 -16.38068 -16.12837 -15.85951 -15.64729 -15.31044 -15.03084 -14.66381 -14.57636 -14.36453 -14.11764 -13.99500 -13.88936 -13.58790 -13.37033 -13.29228 -13.16644 -13.03955 -12.85832 -12.74172 -12.62558 -12.19168 -11.96921 -11.75599 -11.25038 -11.12541 -10.89812 -10.65568 -10.32536 -10.28412 -10.13650 -9.78144 -9.38993 -8.66443 -8.34136 -6.12473 0.13702 0.36856 1.27064 1.44497 1.46945 1.57017 1.60801 2.22137 2.28668 2.72955 2.99881 3.18516 3.32384 3.41909 3.48230 3.76961 3.87735 3.89713 3.94949 4.01325 4.05533 4.12675 4.15021 4.29546 4.40254 4.48601 4.51784 4.53155 4.61887 4.68870 4.76127 4.78391 4.79393 4.86768 5.08154 5.18123 5.25872 5.34439 5.40039 5.42078 5.80365 5.92624 6.20029 6.37670 6.48814 6.76989 7.07016 7.10956 7.23499 8.74826 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033149 B = 0.001459 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.475153 B =19189.020257 C =19345.475583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.136 4.136 3 C -0.085 4.085 4 C -0.168 4.168 5 C 0.073 3.927 6 N -0.501 5.501 7 C 0.109 3.891 8 C 0.109 3.891 9 N -0.683 5.683 10 C 0.037 3.963 11 C 0.117 3.883 12 H 0.108 0.892 13 O -0.564 6.564 14 C 0.090 3.910 15 N -0.707 5.707 16 C 0.534 3.466 17 O -0.566 6.566 18 C -0.131 4.131 19 S -0.150 6.150 20 C -0.550 4.550 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.349 0.651 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.388 0.612 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.416 0.584 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.664 31.790 -16.285 37.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.139 4.139 3 C -0.111 4.111 4 C -0.188 4.188 5 C -0.084 4.084 6 N -0.211 5.211 7 C -0.029 4.029 8 C -0.020 4.020 9 N -0.316 5.316 10 C -0.093 4.093 11 C 0.057 3.943 12 H 0.126 0.874 13 O -0.371 6.371 14 C -0.034 4.034 15 N -0.361 5.361 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.078 5.922 20 C -0.697 4.697 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.187 1.187 26 H -0.203 1.203 27 H -0.187 1.187 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.176 0.824 32 H 0.179 0.821 33 H 0.186 0.814 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.168 0.832 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.238 0.762 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.253 0.747 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.619 29.372 -17.366 36.045 hybrid contribution -1.180 1.442 1.502 2.393 sum 10.439 30.813 -15.864 36.195 Atomic orbital electron populations 1.20889 0.88664 1.04133 1.03464 1.21041 0.98763 0.93453 1.00633 1.21879 0.94484 0.98855 0.95890 1.22487 0.95724 1.00109 1.00451 1.23146 1.01276 0.87905 0.96032 1.67436 1.08707 1.32915 1.12001 1.21129 0.89762 0.95024 0.97008 1.20788 0.98203 0.92565 0.90424 1.60239 1.53104 1.05799 1.12472 1.22504 0.97971 0.92760 0.96055 1.21965 0.93878 0.84830 0.93602 0.87413 1.86605 1.29812 1.61203 1.59447 1.22075 1.01519 0.97278 0.82550 1.45615 1.62664 1.18283 1.09564 1.20035 0.76573 0.81487 0.89955 1.90687 1.51766 1.52886 1.49163 1.23376 1.05648 1.02387 0.96763 1.85527 1.79140 1.17156 1.10426 1.23191 1.47573 1.07365 0.91601 0.89960 1.26118 0.93861 0.94262 1.04774 1.70174 1.39159 1.07899 1.37480 0.85007 0.79082 0.77842 0.76082 1.18657 1.20313 1.18730 0.90029 0.89817 0.90644 0.82372 0.82148 0.81362 0.90489 0.91308 0.83196 0.89612 0.92593 0.76247 0.91121 0.91172 0.74679 0.87408 0.87282 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.62 71.24 0.69 -0.05 16 2 C -0.14 -1.62 5.90 -19.77 -0.12 -1.73 16 3 C -0.09 -0.83 9.86 22.47 0.22 -0.61 16 4 C -0.17 -1.69 10.11 22.36 0.23 -1.46 16 5 C 0.07 1.06 11.18 84.69 0.95 2.01 16 6 N -0.50 -9.90 10.27 -183.89 -1.89 -11.79 16 7 C 0.11 1.77 6.29 42.54 0.27 2.04 16 8 C 0.11 1.50 5.58 85.56 0.48 1.98 16 9 N -0.68 -9.54 6.49 -517.94 -3.36 -12.91 16 10 C 0.04 0.44 5.36 86.30 0.46 0.90 16 11 C 0.12 1.65 3.29 30.60 0.10 1.75 16 12 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 13 O -0.56 -7.55 12.60 -148.98 -1.88 -9.42 16 14 C 0.09 1.79 5.34 86.38 0.46 2.26 16 15 N -0.71 -17.65 5.45 -463.06 -2.52 -20.17 16 16 C 0.53 19.66 7.85 87.66 0.69 20.35 16 17 O -0.57 -26.05 15.86 -3.02 -0.05 -26.09 16 18 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 19 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 20 C -0.55 -31.65 9.50 67.95 0.65 -31.01 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.84 5.49 84.86 0.47 1.31 16 23 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 24 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 27 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 28 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 0.32 8.10 -2.39 -0.02 0.30 16 30 H 0.07 0.43 5.95 -2.39 -0.01 0.41 16 31 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 33 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 35 H 0.07 0.66 5.93 -2.39 -0.01 0.64 16 36 H 0.35 4.60 8.28 -89.70 -0.74 3.85 16 37 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.39 2.95 9.05 -74.06 -0.67 2.28 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.42 8.40 8.35 -92.71 -0.77 7.63 16 43 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 44 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -82.05 396.10 -3.73 -85.78 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -1.15 Total: 21.28 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.97 Total: -7.07 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -7.49 Total: -100.74 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.93 Total: -35.52 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -82.05 -3.73 -85.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272371471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.864 kcal (2) G-P(sol) polarization free energy of solvation -82.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds