Wall clock time and date at job start Tue Mar 31 2020 22:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00104 * 2 1 4 4 H 1.48503 * 109.47038 * 269.99675 * 3 2 1 5 5 H 1.48499 * 109.47499 * 29.99792 * 3 2 1 6 6 H 1.48506 * 109.47165 * 149.99728 * 3 2 1 7 7 C 1.38811 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00234 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.46491 * 119.99927 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47374 * 174.82477 * 10 9 7 12 12 N 1.46497 * 109.54249 * 58.69925 * 11 10 9 13 13 C 1.34783 * 119.99728 * 56.85131 * 12 11 10 14 14 O 1.21279 * 119.99999 * 4.60933 * 13 12 11 15 15 C 1.50700 * 119.99875 * 184.60216 * 13 12 11 16 16 C 1.53002 * 109.46872 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47251 * 180.02562 * 16 15 13 18 18 N 1.29025 * 124.91497 * 89.69779 * 17 16 15 19 19 C 1.31783 * 117.12680 * 179.81800 * 18 17 16 20 20 C 1.33640 * 114.49799 * 0.46918 * 19 18 17 21 21 S 1.70980 * 124.91897 * 270.00563 * 17 16 15 22 22 C 1.53175 * 109.54646 * 178.87969 * 11 10 9 23 23 C 1.53281 * 109.06194 * 176.84857 * 22 11 10 24 24 O 1.42897 * 109.46559 * 302.44642 * 23 22 11 25 25 C 1.42909 * 114.09731 * 61.15824 * 24 23 22 26 26 C 1.53094 * 109.41074 * 298.84264 * 25 24 23 27 27 H 0.97007 * 119.99762 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99709 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47410 * 54.82397 * 10 9 7 30 30 H 1.09001 * 109.47518 * 294.82662 * 10 9 7 31 31 H 0.96996 * 120.00783 * 237.12838 * 12 11 10 32 32 H 1.08997 * 109.47385 * 300.00324 * 15 13 12 33 33 H 1.09004 * 109.46869 * 60.00571 * 15 13 12 34 34 H 1.08997 * 109.47322 * 300.00291 * 16 15 13 35 35 H 1.09004 * 109.46966 * 60.00559 * 16 15 13 36 36 H 1.07996 * 122.75118 * 180.22250 * 19 18 17 37 37 H 1.07993 * 126.03582 * 179.71974 * 20 19 18 38 38 H 1.08997 * 109.52254 * 296.84652 * 22 11 10 39 39 H 1.09005 * 109.52234 * 57.03295 * 22 11 10 40 40 H 1.09004 * 109.45647 * 182.44761 * 23 22 11 41 41 H 1.09005 * 109.46471 * 62.45270 * 23 22 11 42 42 H 1.08999 * 109.48154 * 178.85666 * 25 24 23 43 43 H 1.09005 * 109.48710 * 58.82782 * 25 24 23 44 44 H 1.08999 * 109.52366 * 297.69623 * 26 25 24 45 45 H 1.09008 * 109.56975 * 177.54640 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0689 -4.8167 0.1330 12 7 0.1147 -4.7754 -0.9779 13 6 0.5598 -4.8028 -2.2498 14 8 1.7428 -4.9459 -2.4754 15 6 -0.4127 -4.6559 -3.3917 16 6 0.3456 -4.7220 -4.7189 17 6 -0.6267 -4.5744 -5.8608 18 7 -0.9754 -3.4522 -6.3935 19 6 -1.8365 -3.5019 -7.3899 20 6 -2.2441 -4.7339 -7.7092 21 16 -1.4332 -5.8693 -6.6331 22 6 1.8306 -6.1453 0.1051 23 6 0.8394 -7.2952 0.3164 24 8 0.1499 -7.1082 1.5540 25 6 -0.6167 -5.9038 1.6186 26 6 0.3146 -4.6990 1.4610 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0016 29 1 2.7530 -3.6751 0.8411 30 1 2.6125 -3.7562 -0.9315 31 1 -0.8371 -4.7242 -0.7982 32 1 -1.1449 -5.4623 -3.3514 33 1 -0.9240 -3.6965 -3.3122 34 1 1.0780 -3.9158 -4.7594 35 1 0.8566 -5.6816 -4.7981 36 1 -2.1874 -2.6190 -7.9034 37 1 -2.9468 -4.9886 -8.4886 38 1 2.3260 -6.2610 -0.8589 39 1 2.5747 -6.1554 0.9016 40 1 1.3805 -8.2412 0.3411 41 1 0.1197 -7.3095 -0.5022 42 1 -1.1245 -5.8474 2.5814 43 1 -1.3555 -5.8996 0.8171 44 1 1.0280 -4.6798 2.2848 45 1 -0.2726 -3.7805 1.4663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274013955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:06 Heat of formation + Delta-G solvation = -27.079503 kcal Electronic energy + Delta-G solvation = -27969.818731 eV Core-core repulsion = 24114.487561 eV Total energy + Delta-G solvation = -3855.331170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52635 -39.76793 -38.41733 -35.84272 -33.85478 -33.65181 -31.71722 -31.03114 -30.38030 -29.64488 -26.68783 -26.05149 -23.74533 -23.60935 -23.12206 -21.48074 -20.61738 -19.97020 -19.01414 -18.13033 -17.23819 -17.05488 -16.04707 -15.90041 -15.60510 -15.46671 -15.36714 -14.75645 -14.57248 -14.30640 -14.09589 -13.84125 -13.57081 -13.25248 -13.03893 -12.83664 -12.62358 -12.33636 -12.25778 -12.07472 -11.74511 -11.67748 -11.55753 -11.19027 -11.08630 -10.89273 -10.78776 -10.50419 -10.30903 -10.04702 -9.73640 -9.69154 -9.58218 -9.52041 -9.31868 -9.01405 -8.77993 -8.56693 -6.84176 -5.73598 -2.99820 0.54409 1.20115 1.58602 2.70706 2.96716 3.42900 3.47130 3.52405 3.53269 3.96410 4.07214 4.61822 4.72447 4.87107 4.97357 4.97995 5.02477 5.08573 5.12583 5.15492 5.22010 5.32040 5.35319 5.45264 5.51040 5.62473 5.76008 5.78658 5.87335 5.96119 6.00586 6.07470 6.09223 6.12912 6.26977 6.32763 6.50772 6.53405 6.87590 7.08977 7.27042 7.64020 7.75069 7.83473 8.46000 8.56684 9.57738 10.14827 10.50573 11.49611 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007633 B = 0.004104 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3667.178936 B = 6821.801784 C = 9713.116760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.232 4.232 8 H 0.068 0.932 9 N -0.726 5.726 10 C 0.142 3.858 11 C 0.175 3.825 12 N -0.715 5.715 13 C 0.527 3.473 14 O -0.533 6.533 15 C -0.135 4.135 16 C -0.028 4.028 17 C 0.063 3.937 18 N -0.470 5.470 19 C 0.043 3.957 20 C -0.267 4.267 21 S 0.108 5.892 22 C -0.163 4.163 23 C 0.067 3.933 24 O -0.386 6.386 25 C 0.061 3.939 26 C -0.154 4.154 27 H 0.253 0.747 28 H 0.381 0.619 29 H 0.025 0.975 30 H 0.045 0.955 31 H 0.395 0.605 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.086 0.914 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.603 -16.907 -8.897 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.370 5.370 10 C 0.013 3.987 11 C 0.089 3.911 12 N -0.366 5.366 13 C 0.314 3.686 14 O -0.410 6.410 15 C -0.177 4.177 16 C -0.070 4.070 17 C -0.215 4.215 18 N -0.184 5.184 19 C -0.108 4.108 20 C -0.406 4.406 21 S 0.362 5.638 22 C -0.202 4.202 23 C -0.010 4.010 24 O -0.305 6.305 25 C -0.016 4.016 26 C -0.192 4.192 27 H 0.063 0.937 28 H 0.215 0.785 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.229 0.771 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.192 0.808 37 H 0.193 0.807 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.372 -17.591 -8.572 20.292 hybrid contribution -0.821 2.225 -0.730 2.482 sum -6.192 -15.366 -9.301 18.999 Atomic orbital electron populations 1.69637 1.05028 1.25455 1.58413 1.24662 0.95497 0.97481 1.03308 0.86216 0.78662 0.83992 0.77513 1.21805 1.21880 1.20840 1.19221 0.91018 0.84163 1.41897 0.91378 1.42212 1.05566 0.99697 1.89526 1.21086 0.93088 0.84899 0.99590 1.20586 0.89823 0.95534 0.85137 1.45967 1.09898 1.75322 1.05424 1.20187 0.89233 0.75589 0.83631 1.90636 1.17132 1.48690 1.84521 1.21628 0.98545 1.05101 0.92398 1.20006 0.94423 1.05428 0.87097 1.27236 1.01915 0.90477 1.01876 1.66325 1.14036 1.28077 1.09968 1.21883 0.95915 0.97808 0.95224 1.27061 1.09767 0.95976 1.07766 1.83991 1.37924 1.13781 1.28110 1.22589 0.98893 0.94217 1.04505 1.22533 0.94164 0.98206 0.86120 1.87895 1.64989 1.40905 1.36720 1.22612 0.92841 0.84275 1.01839 1.22421 1.00373 0.99368 0.97037 0.93698 0.78484 0.95699 0.93696 0.77052 0.89313 0.87782 0.87488 0.88889 0.80754 0.80698 0.88696 0.90489 0.89369 0.93547 0.88859 0.93599 0.89583 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.99 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 22.88 29.55 -169.99 -5.02 17.85 16 4 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.02 5.15 -59.91 -0.31 -18.33 16 10 C 0.14 2.94 4.90 -4.05 -0.02 2.92 16 11 C 0.18 2.76 0.32 -131.64 -0.04 2.72 16 12 N -0.71 -10.28 3.81 -47.44 -0.18 -10.47 16 13 C 0.53 8.08 7.24 -10.98 -0.08 8.00 16 14 O -0.53 -9.70 12.23 5.56 0.07 -9.63 16 15 C -0.14 -1.68 5.68 -27.88 -0.16 -1.84 16 16 C -0.03 -0.36 5.09 -27.88 -0.14 -0.50 16 17 C 0.06 0.78 6.64 -13.46 -0.09 0.69 16 18 N -0.47 -6.60 10.54 -11.86 -0.13 -6.72 16 19 C 0.04 0.47 11.35 -19.18 -0.22 0.25 16 20 C -0.27 -2.40 11.37 29.12 0.33 -2.07 16 21 S 0.11 1.02 23.18 -107.50 -2.49 -1.47 16 22 C -0.16 -2.30 4.82 -26.50 -0.13 -2.43 16 23 C 0.07 0.81 6.68 37.30 0.25 1.06 16 24 O -0.39 -5.14 10.77 -35.23 -0.38 -5.52 16 25 C 0.06 0.74 6.67 37.21 0.25 0.99 16 26 C -0.15 -2.25 4.77 -26.59 -0.13 -2.38 16 27 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.38 9.67 6.53 -40.82 -0.27 9.40 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.04 6.15 -51.93 -0.32 0.72 16 31 H 0.40 4.87 7.44 -40.82 -0.30 4.57 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.11 1.61 8.10 -51.93 -0.42 1.19 16 35 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.09 1.45 6.21 -51.93 -0.32 1.13 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.54 7.75 -51.93 -0.40 0.13 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.49 7.04 -51.93 -0.37 0.13 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.09 1.50 7.17 -51.92 -0.37 1.13 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -33.78 374.36 -9.04 -42.82 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -6.54 Total: 12.89 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.42 Total: 0.20 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.11 Total: -62.78 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.31 Total: -15.15 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.78 -9.04 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274013955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.742 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds