Wall clock time and date at job start Tue Mar 31 2020 22:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86796 * 120.00104 * 2 1 4 4 H 1.48503 * 109.47038 * 269.99675 * 3 2 1 5 5 H 1.48499 * 109.47499 * 29.99792 * 3 2 1 6 6 H 1.48506 * 109.47165 * 149.99728 * 3 2 1 7 7 C 1.38811 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00234 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.46491 * 119.99927 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47374 * 174.82477 * 10 9 7 12 12 N 1.46497 * 109.54249 * 58.69925 * 11 10 9 13 13 C 1.34783 * 119.99728 * 56.85131 * 12 11 10 14 14 O 1.21279 * 119.99999 * 4.60933 * 13 12 11 15 15 C 1.50700 * 119.99875 * 184.60216 * 13 12 11 16 16 C 1.53002 * 109.46872 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47251 * 180.02562 * 16 15 13 18 18 N 1.29025 * 124.91497 * 89.69779 * 17 16 15 19 19 C 1.31783 * 117.12680 * 179.81800 * 18 17 16 20 20 C 1.33640 * 114.49799 * 0.46918 * 19 18 17 21 21 S 1.70980 * 124.91897 * 270.00563 * 17 16 15 22 22 C 1.53175 * 109.54646 * 178.87969 * 11 10 9 23 23 C 1.53281 * 109.06194 * 176.84857 * 22 11 10 24 24 O 1.42897 * 109.46559 * 302.44642 * 23 22 11 25 25 C 1.42909 * 114.09731 * 61.15824 * 24 23 22 26 26 C 1.53094 * 109.41074 * 298.84264 * 25 24 23 27 27 H 0.97007 * 119.99762 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99709 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47410 * 54.82397 * 10 9 7 30 30 H 1.09001 * 109.47518 * 294.82662 * 10 9 7 31 31 H 0.96996 * 120.00783 * 237.12838 * 12 11 10 32 32 H 1.08997 * 109.47385 * 300.00324 * 15 13 12 33 33 H 1.09004 * 109.46869 * 60.00571 * 15 13 12 34 34 H 1.08997 * 109.47322 * 300.00291 * 16 15 13 35 35 H 1.09004 * 109.46966 * 60.00559 * 16 15 13 36 36 H 1.07996 * 122.75118 * 180.22250 * 19 18 17 37 37 H 1.07993 * 126.03582 * 179.71974 * 20 19 18 38 38 H 1.08997 * 109.52254 * 296.84652 * 22 11 10 39 39 H 1.09005 * 109.52234 * 57.03295 * 22 11 10 40 40 H 1.09004 * 109.45647 * 182.44761 * 23 22 11 41 41 H 1.09005 * 109.46471 * 62.45270 * 23 22 11 42 42 H 1.08999 * 109.48154 * 178.85666 * 25 24 23 43 43 H 1.09005 * 109.48710 * 58.82782 * 25 24 23 44 44 H 1.08999 * 109.52366 * 297.69623 * 26 25 24 45 45 H 1.09008 * 109.56975 * 177.54640 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0689 -4.8167 0.1330 12 7 0.1147 -4.7754 -0.9779 13 6 0.5598 -4.8028 -2.2498 14 8 1.7428 -4.9459 -2.4754 15 6 -0.4127 -4.6559 -3.3917 16 6 0.3456 -4.7220 -4.7189 17 6 -0.6267 -4.5744 -5.8608 18 7 -0.9754 -3.4522 -6.3935 19 6 -1.8365 -3.5019 -7.3899 20 6 -2.2441 -4.7339 -7.7092 21 16 -1.4332 -5.8693 -6.6331 22 6 1.8306 -6.1453 0.1051 23 6 0.8394 -7.2952 0.3164 24 8 0.1499 -7.1082 1.5540 25 6 -0.6167 -5.9038 1.6186 26 6 0.3146 -4.6990 1.4610 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0016 29 1 2.7530 -3.6751 0.8411 30 1 2.6125 -3.7562 -0.9315 31 1 -0.8371 -4.7242 -0.7982 32 1 -1.1449 -5.4623 -3.3514 33 1 -0.9240 -3.6965 -3.3122 34 1 1.0780 -3.9158 -4.7594 35 1 0.8566 -5.6816 -4.7981 36 1 -2.1874 -2.6190 -7.9034 37 1 -2.9468 -4.9886 -8.4886 38 1 2.3260 -6.2610 -0.8589 39 1 2.5747 -6.1554 0.9016 40 1 1.3805 -8.2412 0.3411 41 1 0.1197 -7.3095 -0.5022 42 1 -1.1245 -5.8474 2.5814 43 1 -1.3555 -5.8996 0.8171 44 1 1.0280 -4.6798 2.2848 45 1 -0.2726 -3.7805 1.4663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274013955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:05 Heat of formation + Delta-G solvation = -51.251055 kcal Electronic energy + Delta-G solvation = -27970.866888 eV Core-core repulsion = 24114.487561 eV Total energy + Delta-G solvation = -3856.379327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75595 -40.63573 -39.55773 -37.27295 -35.47429 -34.88981 -33.20024 -32.25866 -31.99372 -30.52818 -28.21811 -27.15948 -25.41721 -24.69091 -24.21904 -23.01441 -21.74847 -20.83310 -20.31216 -19.27328 -18.99176 -18.21318 -17.18000 -17.00320 -16.82475 -16.59056 -16.39311 -16.29314 -15.74641 -15.56492 -15.35800 -15.05473 -14.97298 -14.78625 -14.30980 -14.05359 -13.94316 -13.55966 -13.46995 -13.18080 -13.10033 -13.03722 -12.80431 -12.78826 -12.42352 -12.29433 -12.14587 -12.11216 -11.96220 -11.63608 -11.34090 -11.02907 -10.67936 -10.57139 -10.46454 -10.35242 -9.88259 -9.80405 -8.94995 -7.96723 -5.22409 -0.26143 0.42539 0.79989 1.43342 1.45300 1.52924 1.72478 1.86062 2.26652 2.53999 2.99225 3.19744 3.36949 3.58430 3.74853 3.81662 3.89154 4.00110 4.03906 4.11955 4.24964 4.28013 4.32161 4.41690 4.48330 4.53245 4.56900 4.69609 4.79054 4.82614 4.85900 4.87836 4.89437 4.99663 5.10482 5.14778 5.19496 5.22530 5.25108 5.46442 5.67903 6.26117 6.27899 6.64858 6.83510 7.33852 7.36275 8.07964 8.36406 9.26092 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007633 B = 0.004104 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3667.178936 B = 6821.801784 C = 9713.116760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.066 4.066 3 Si 0.965 3.035 4 H -0.292 1.292 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.063 0.937 9 N -0.728 5.728 10 C 0.143 3.857 11 C 0.182 3.818 12 N -0.708 5.708 13 C 0.521 3.479 14 O -0.565 6.565 15 C -0.124 4.124 16 C -0.022 4.022 17 C 0.032 3.968 18 N -0.513 5.513 19 C 0.015 3.985 20 C -0.251 4.251 21 S 0.165 5.835 22 C -0.156 4.156 23 C 0.072 3.928 24 O -0.393 6.393 25 C 0.066 3.934 26 C -0.147 4.147 27 H 0.251 0.749 28 H 0.378 0.622 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.408 0.592 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.189 0.811 37 H 0.210 0.790 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.058 0.942 42 H 0.111 0.889 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.179 -18.874 -9.487 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.259 4.259 3 Si 0.795 3.205 4 H -0.220 1.220 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.372 5.372 10 C 0.015 3.985 11 C 0.095 3.905 12 N -0.360 5.360 13 C 0.309 3.691 14 O -0.445 6.445 15 C -0.165 4.165 16 C -0.064 4.064 17 C -0.245 4.245 18 N -0.229 5.229 19 C -0.135 4.135 20 C -0.389 4.389 21 S 0.418 5.582 22 C -0.195 4.195 23 C -0.005 4.005 24 O -0.312 6.312 25 C -0.010 4.010 26 C -0.185 4.185 27 H 0.060 0.940 28 H 0.211 0.789 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.244 0.756 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.206 0.794 37 H 0.227 0.773 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.076 0.924 42 H 0.129 0.871 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.949 -19.585 -9.146 22.705 hybrid contribution -0.304 2.797 -0.615 2.880 sum -7.253 -16.788 -9.762 20.730 Atomic orbital electron populations 1.69762 1.06122 1.25887 1.59442 1.25373 0.96393 1.00397 1.03707 0.85266 0.77880 0.80183 0.77206 1.21987 1.21625 1.19827 1.19519 0.91109 0.85712 1.41295 0.91923 1.42261 1.05449 1.00250 1.89194 1.21120 0.94084 0.85404 0.97866 1.20394 0.89435 0.94311 0.86328 1.45898 1.10350 1.74803 1.04924 1.20729 0.89281 0.74757 0.84369 1.90624 1.18677 1.50130 1.85022 1.21572 0.98281 1.05604 0.91074 1.19855 0.94095 1.04622 0.87788 1.27055 1.03080 0.91786 1.02596 1.66293 1.15385 1.29824 1.11403 1.22165 0.96475 0.99442 0.95465 1.27533 1.08832 0.95130 1.07453 1.83720 1.36187 1.11527 1.26717 1.22512 0.99249 0.94021 1.03740 1.22581 0.93883 0.97829 0.86190 1.87901 1.65112 1.40965 1.37241 1.22661 0.92218 0.82458 1.03670 1.22331 1.00335 1.00103 0.95772 0.94022 0.78897 0.96397 0.96083 0.75619 0.85470 0.89357 0.91191 0.87639 0.79373 0.77298 0.89951 0.90741 0.87358 0.92409 0.87079 0.91659 0.90500 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.35 13.06 21.65 0.28 -58.07 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 3 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 4 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.24 -14.17 9.99 84.03 0.84 -13.33 16 8 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 9 N -0.73 -37.30 5.15 -343.46 -1.77 -39.07 16 10 C 0.14 6.15 4.90 86.38 0.42 6.58 16 11 C 0.18 5.75 0.32 3.72 0.00 5.75 16 12 N -0.71 -20.14 3.81 -422.38 -1.61 -21.74 16 13 C 0.52 16.10 7.24 87.66 0.63 16.74 16 14 O -0.57 -21.27 12.23 -3.03 -0.04 -21.31 16 15 C -0.12 -3.06 5.68 29.85 0.17 -2.90 16 16 C -0.02 -0.58 5.09 29.85 0.15 -0.43 16 17 C 0.03 0.77 6.64 88.52 0.59 1.36 16 18 N -0.51 -14.56 10.54 -191.45 -2.02 -16.58 16 19 C 0.01 0.31 11.35 83.66 0.95 1.26 16 20 C -0.25 -3.83 11.37 66.78 0.76 -3.07 16 21 S 0.17 2.70 23.18 -56.49 -1.31 1.39 16 22 C -0.16 -4.31 4.82 30.75 0.15 -4.16 16 23 C 0.07 1.57 6.68 72.08 0.48 2.05 16 24 O -0.39 -9.40 10.77 -148.98 -1.60 -11.01 16 25 C 0.07 1.45 6.67 72.01 0.48 1.93 16 26 C -0.15 -4.24 4.77 30.69 0.15 -4.09 16 27 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 28 H 0.38 19.68 6.53 -92.71 -0.61 19.08 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.02 1.03 6.15 -2.39 -0.01 1.01 16 31 H 0.41 9.56 7.44 -92.71 -0.69 8.87 16 32 H 0.13 2.11 8.14 -2.39 -0.02 2.10 16 33 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 2.29 8.10 -2.39 -0.02 2.27 16 35 H 0.11 2.37 8.10 -2.39 -0.02 2.35 16 36 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.21 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.08 2.53 6.21 -2.39 -0.01 2.51 16 39 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.06 1.16 7.75 -2.38 -0.02 1.14 16 42 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 1.19 7.04 -2.38 -0.02 1.18 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.07 2.38 7.17 -2.38 -0.02 2.37 16 Total: -1.00 -74.87 374.36 -0.07 -74.94 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.27 Total: 37.48 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 6.24 Total: 4.30 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -5.11 Total: -135.45 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -1.64 Total: -32.32 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.31 Total: 1.39 kcal Total: -74.87 -0.07 -74.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274013955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.688 kcal (2) G-P(sol) polarization free energy of solvation -74.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds