Wall clock time and date at job start Tue Mar 31 2020 22:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99876 * 2 1 4 4 H 1.48502 * 109.47020 * 240.00039 * 3 2 1 5 5 H 1.48494 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47062 * 120.00133 * 3 2 1 7 7 C 1.38813 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99806 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00041 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99784 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46687 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.46123 * 65.02890 * 11 10 9 13 13 C 1.53032 * 109.46007 * 305.06783 * 11 10 9 14 14 C 1.53197 * 109.31075 * 178.61637 * 13 11 10 15 15 N 1.46930 * 108.77668 * 54.63447 * 14 13 11 16 16 C 1.34771 * 120.62974 * 126.41076 * 15 14 13 17 17 O 1.21279 * 119.99891 * 179.97438 * 16 15 14 18 18 C 1.50703 * 120.00331 * 359.97438 * 16 15 14 19 19 C 1.52998 * 109.47291 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.47068 * 179.97438 * 19 18 16 21 21 C 1.33647 * 126.03588 * 89.71809 * 20 19 18 22 22 N 1.31774 * 114.50208 * 179.78665 * 21 20 19 23 23 C 1.29030 * 117.12171 * 0.52570 * 22 21 20 24 24 S 1.70976 * 110.16986 * 359.70674 * 23 22 21 25 25 C 1.46927 * 118.73677 * 306.39359 * 15 14 13 26 26 C 1.53042 * 109.45627 * 184.99631 * 11 10 9 27 27 H 0.96998 * 120.00449 * 359.97438 * 1 2 3 28 28 H 0.97004 * 119.99664 * 359.97438 * 9 7 2 29 29 H 1.08992 * 109.47311 * 59.99945 * 10 9 7 30 30 H 1.08997 * 109.46828 * 299.99589 * 10 9 7 31 31 H 0.96702 * 113.99989 * 299.99758 * 12 11 10 32 32 H 1.09002 * 109.49818 * 298.56292 * 13 11 10 33 33 H 1.08994 * 109.50136 * 58.66386 * 13 11 10 34 34 H 1.08996 * 109.58455 * 294.84405 * 14 13 11 35 35 H 1.09010 * 109.58494 * 174.42078 * 14 13 11 36 36 H 1.09002 * 109.46996 * 299.99892 * 18 16 15 37 37 H 1.09002 * 109.47029 * 59.99624 * 18 16 15 38 38 H 1.09002 * 109.47234 * 300.00017 * 19 18 16 39 39 H 1.09002 * 109.47169 * 59.99981 * 19 18 16 40 40 H 1.07999 * 122.74416 * 359.97438 * 21 20 19 41 41 H 1.08001 * 124.91407 * 179.68374 * 23 22 21 42 42 H 1.08997 * 109.58457 * 293.82057 * 25 15 14 43 43 H 1.09000 * 109.70357 * 173.46438 * 25 15 14 44 44 H 1.08996 * 109.49952 * 301.33712 * 26 11 10 45 45 H 1.09008 * 109.49643 * 61.43586 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 8 0.3216 -4.8111 -1.2242 13 6 0.1028 -4.6693 1.1783 14 6 -0.9125 -5.8162 1.1547 15 7 -0.1842 -7.0921 1.1279 16 6 -0.4414 -8.0489 2.0415 17 8 0.1662 -9.0980 2.0084 18 6 -1.4841 -7.8153 3.1043 19 6 -1.5790 -9.0481 4.0053 20 6 -2.6212 -8.8142 5.0685 21 6 -3.9222 -9.1040 4.9713 22 7 -4.6297 -8.8073 6.0427 23 6 -3.9998 -8.2737 7.0343 24 16 -2.3411 -8.1035 6.6562 25 6 0.8294 -7.3050 0.0858 26 6 1.8252 -6.1415 0.1214 27 1 -0.4851 0.8400 0.0004 28 1 0.3555 -2.3881 -0.0016 29 1 2.6847 -3.7153 0.8871 30 1 2.6847 -3.7137 -0.8928 31 1 -0.1863 -4.0013 -1.3701 32 1 0.6656 -4.7008 2.1113 33 1 -0.4220 -3.7171 1.1015 34 1 -1.5370 -5.7331 0.2653 35 1 -1.5364 -5.7703 2.0474 36 1 -1.2049 -6.9480 3.7027 37 1 -2.4500 -7.6353 2.6323 38 1 -1.8584 -9.9151 3.4067 39 1 -0.6132 -9.2285 4.4773 40 1 -4.3575 -9.5480 4.0882 41 1 -4.4546 -7.9772 7.9680 42 1 0.3470 -7.3434 -0.8908 43 1 1.3553 -8.2418 0.2706 44 1 2.5261 -6.2370 -0.7078 45 1 2.3718 -6.1590 1.0643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274558598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:01 Heat of formation + Delta-G solvation = -32.580951 kcal Electronic energy + Delta-G solvation = -27066.808666 eV Core-core repulsion = 23211.238935 eV Total energy + Delta-G solvation = -3855.569731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48345 -39.88970 -38.59307 -35.58925 -34.52617 -34.08085 -32.07608 -31.33326 -30.36189 -29.58150 -26.98357 -26.00950 -24.21342 -23.41616 -23.24476 -21.72020 -20.42207 -20.16436 -18.93948 -18.43476 -17.56646 -17.23584 -16.18285 -16.02830 -15.76302 -15.39573 -15.00097 -14.71423 -14.45931 -14.36322 -14.16670 -14.12046 -13.83354 -13.34951 -13.18166 -13.02242 -12.86175 -12.61969 -12.45288 -12.21147 -11.98876 -11.92383 -11.55903 -11.20931 -11.12130 -11.09269 -11.04421 -10.86160 -10.36191 -10.21106 -9.99366 -9.90920 -9.71589 -9.55463 -9.46776 -9.24605 -8.98770 -8.60321 -7.06010 -5.88239 -3.17372 0.36556 1.02628 1.42796 2.50214 2.53250 2.94236 3.38005 3.42961 3.43460 4.01278 4.24810 4.48741 4.50829 4.62190 4.67084 4.74512 4.85903 4.92818 4.99448 5.08486 5.11573 5.16637 5.23973 5.37839 5.46694 5.54258 5.59325 5.64014 5.69830 5.77485 5.83775 5.85205 5.93917 5.99051 6.07571 6.29877 6.33810 6.52509 6.64491 6.65748 7.35545 7.36605 7.60624 8.02823 8.07339 8.30657 9.41640 9.94907 10.29212 11.34458 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.002437 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.147128 B =11484.841078 C =13009.186147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.128 3.872 11 C 0.130 3.870 12 O -0.561 6.561 13 C -0.158 4.158 14 C 0.110 3.890 15 N -0.605 5.605 16 C 0.515 3.485 17 O -0.550 6.550 18 C -0.137 4.137 19 C -0.026 4.026 20 C -0.212 4.212 21 C 0.030 3.970 22 N -0.471 5.471 23 C 0.013 3.987 24 S 0.125 5.875 25 C 0.118 3.882 26 C -0.117 4.117 27 H 0.257 0.743 28 H 0.381 0.619 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.383 0.617 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.176 0.824 41 H 0.198 0.802 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 -18.028 10.032 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.000 4.000 11 C 0.089 3.911 12 O -0.368 6.368 13 C -0.196 4.196 14 C -0.013 4.013 15 N -0.338 5.338 16 C 0.304 3.696 17 O -0.428 6.428 18 C -0.177 4.177 19 C -0.066 4.066 20 C -0.333 4.333 21 C -0.120 4.120 22 N -0.184 5.184 23 C -0.285 4.285 24 S 0.377 5.623 25 C -0.004 4.004 26 C -0.155 4.155 27 H 0.067 0.933 28 H 0.216 0.784 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.232 0.768 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.193 0.807 41 H 0.215 0.785 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.024 -18.734 10.579 22.093 hybrid contribution -0.529 1.503 -0.557 1.688 sum -5.553 -17.231 10.022 20.692 Atomic orbital electron populations 1.69613 1.05090 1.25996 1.57599 1.24725 0.95561 0.97731 1.02706 0.86246 0.78548 0.83353 0.77904 1.21204 1.21629 1.21249 1.19160 0.91066 0.84004 1.43060 0.91209 1.42323 1.05544 0.99993 1.89733 1.21327 0.93918 0.86005 0.98745 1.21284 0.91149 0.94841 0.83815 1.86372 1.65780 1.44459 1.40229 1.22542 0.98409 0.98870 0.99794 1.21787 0.94454 0.82290 1.02723 1.48155 1.39374 1.16180 1.30086 1.20517 0.83710 0.83410 0.81989 1.90680 1.51832 1.26146 1.74177 1.21733 0.99518 0.99949 0.96540 1.19777 0.96184 0.98048 0.92628 1.26071 0.99399 1.08244 0.99623 1.21806 0.89453 1.02909 0.97872 1.66329 1.38437 1.13273 1.00324 1.28390 0.94467 1.02976 1.02647 1.84205 1.11523 1.56758 1.09820 1.21518 0.89490 0.98737 0.90678 1.21848 0.97658 0.93011 1.03004 0.93344 0.78449 0.95680 0.95282 0.76846 0.90794 0.88887 0.90501 0.90044 0.88548 0.88423 0.88742 0.89590 0.80719 0.78512 0.90651 0.89371 0.89982 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -16.95 5.07 -59.91 -0.30 -17.26 16 10 C 0.13 2.42 5.43 -4.04 -0.02 2.40 16 11 C 0.13 1.96 0.71 -90.58 -0.06 1.89 16 12 O -0.56 -8.72 11.70 -35.23 -0.41 -9.14 16 13 C -0.16 -2.18 4.88 -26.61 -0.13 -2.31 16 14 C 0.11 1.24 6.10 -3.71 -0.02 1.22 16 15 N -0.61 -7.28 2.97 -172.76 -0.51 -7.79 16 16 C 0.52 6.21 7.70 -10.99 -0.08 6.13 16 17 O -0.55 -8.25 15.40 5.56 0.09 -8.17 16 18 C -0.14 -1.20 4.03 -27.88 -0.11 -1.31 16 19 C -0.03 -0.22 5.04 -27.88 -0.14 -0.36 16 20 C -0.21 -1.79 5.85 -35.92 -0.21 -2.00 16 21 C 0.03 0.27 11.25 -19.19 -0.22 0.06 16 22 N -0.47 -4.73 10.54 -15.75 -0.17 -4.89 16 23 C 0.01 0.10 12.23 51.59 0.63 0.73 16 24 S 0.12 0.94 23.22 -107.50 -2.50 -1.56 16 25 C 0.12 1.49 6.19 -3.71 -0.02 1.47 16 26 C -0.12 -1.53 5.11 -26.61 -0.14 -1.67 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.38 8.94 5.55 -40.82 -0.23 8.71 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.38 5.93 8.19 45.56 0.37 6.30 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.46 6.53 -51.93 -0.34 1.12 16 34 H 0.08 0.87 7.81 -51.93 -0.41 0.47 16 35 H 0.08 0.75 5.93 -51.92 -0.31 0.44 16 36 H 0.10 0.79 7.69 -51.93 -0.40 0.39 16 37 H 0.10 0.73 7.94 -51.93 -0.41 0.32 16 38 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.20 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.08 0.98 7.81 -51.93 -0.41 0.57 16 43 H 0.09 1.14 7.01 -51.93 -0.36 0.77 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -31.97 376.47 -9.04 -41.01 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.83 Total: 12.17 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -0.78 Total: -0.78 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.26 Total: -55.91 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.33 Total: -17.31 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.97 -9.04 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274558598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.431 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds