Wall clock time and date at job start Tue Mar 31 2020 22:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48497 * 109.46927 * 269.99350 * 3 2 1 5 5 H 1.48495 * 109.47497 * 29.99671 * 3 2 1 6 6 H 1.48507 * 109.47124 * 149.99591 * 3 2 1 7 7 C 1.38815 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99850 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99996 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99753 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46943 * 179.97438 * 10 9 7 12 12 O 1.42902 * 109.46010 * 299.97460 * 11 10 9 13 13 C 1.53037 * 109.46206 * 179.97438 * 11 10 9 14 14 C 1.53188 * 109.31620 * 178.61383 * 13 11 10 15 15 N 1.46923 * 108.77386 * 54.63290 * 14 13 11 16 16 C 1.34777 * 120.63085 * 126.37275 * 15 14 13 17 17 O 1.21278 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46912 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46912 * 179.97438 * 19 18 16 21 21 N 1.29023 * 124.91453 * 89.69696 * 20 19 18 22 22 C 1.31784 * 117.12067 * 179.81054 * 21 20 19 23 23 C 1.33639 * 114.50452 * 0.47847 * 22 21 20 24 24 S 1.70976 * 124.91452 * 269.99939 * 20 19 18 25 25 C 1.46927 * 118.74168 * 306.64423 * 15 14 13 26 26 C 1.52764 * 109.00591 * 53.30853 * 25 15 14 27 27 H 0.97006 * 119.99825 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99816 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.47046 * 59.99820 * 10 9 7 30 30 H 1.08991 * 109.47214 * 299.99585 * 10 9 7 31 31 H 0.96702 * 114.00348 * 60.02629 * 12 11 10 32 32 H 1.09003 * 109.49280 * 58.65947 * 13 11 10 33 33 H 1.09003 * 109.49450 * 298.56998 * 13 11 10 34 34 H 1.09005 * 109.58691 * 294.85269 * 14 13 11 35 35 H 1.08996 * 109.58876 * 174.42237 * 14 13 11 36 36 H 1.09001 * 109.46980 * 59.99654 * 18 16 15 37 37 H 1.08992 * 109.47158 * 299.99760 * 18 16 15 38 38 H 1.09002 * 109.47398 * 300.00078 * 19 18 16 39 39 H 1.09001 * 109.47194 * 60.00258 * 19 18 16 40 40 H 1.08001 * 122.74856 * 180.22372 * 22 21 20 41 41 H 1.08001 * 126.04378 * 179.71880 * 23 22 21 42 42 H 1.08994 * 109.58928 * 173.14412 * 25 15 14 43 43 H 1.08998 * 109.59054 * 293.57111 * 25 15 14 44 44 H 1.09005 * 109.56273 * 185.55024 * 26 25 15 45 45 H 1.09000 * 109.35802 * 65.50097 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6164 -2.1914 0.0011 12 8 5.9615 -1.4426 -1.1661 13 6 6.3814 -3.5169 0.0017 14 6 7.8864 -3.2334 -0.0333 15 7 8.2254 -2.3404 1.0832 16 6 9.1959 -2.6722 1.9575 17 8 9.7985 -3.7166 1.8270 18 6 9.5317 -1.7460 3.0979 19 6 10.6588 -2.3548 3.9344 20 6 10.9950 -1.4282 5.0745 21 7 10.4408 -1.4591 6.2392 22 6 10.8562 -0.5769 7.1257 23 6 11.8070 0.2502 6.6811 24 16 12.1608 -0.1793 5.0092 25 6 7.4822 -1.0818 1.2319 26 6 5.9855 -1.3868 1.2495 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 0.0007 29 1 3.8491 -3.0423 -0.8892 30 1 3.8485 -3.0426 0.8908 31 1 5.5128 -0.5885 -1.2324 32 1 6.1003 -4.0994 -0.8757 33 1 6.1375 -4.0772 0.9044 34 1 8.1460 -2.7533 -0.9768 35 1 8.4368 -4.1688 0.0668 36 1 8.6502 -1.6057 3.7236 37 1 9.8527 -0.7829 2.7012 38 1 10.3374 -3.3179 4.3311 39 1 11.5404 -2.4954 3.3090 40 1 10.4578 -0.5240 8.1282 41 1 12.2754 1.0423 7.2463 42 1 7.7661 -0.5980 2.1665 43 1 7.7081 -0.4227 0.3937 44 1 5.4228 -0.4533 1.2603 45 1 5.7454 -1.9672 2.1404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274580550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:05 Heat of formation + Delta-G solvation = -26.834108 kcal Electronic energy + Delta-G solvation = -27171.599023 eV Core-core repulsion = 23316.278494 eV Total energy + Delta-G solvation = -3855.320529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.58985 -39.96995 -38.72075 -35.73169 -34.33268 -34.19259 -32.14788 -31.46652 -30.72243 -29.97408 -27.43356 -26.26981 -24.11155 -23.51874 -23.14306 -21.56479 -20.43449 -20.22384 -19.04803 -18.45484 -18.08184 -17.26437 -16.27603 -16.07363 -15.83272 -15.70907 -15.00365 -14.83821 -14.62314 -14.56239 -14.32068 -14.01297 -13.78484 -13.37151 -13.21527 -13.17140 -12.95891 -12.58763 -12.58183 -12.26074 -12.03874 -11.89413 -11.74771 -11.52704 -11.43908 -11.22689 -11.19070 -10.96829 -10.36029 -10.28576 -10.03221 -9.95276 -9.78516 -9.68324 -9.58714 -9.26715 -9.01603 -8.69556 -7.36135 -5.85546 -3.22914 0.30564 0.96977 1.36358 2.44308 2.45952 2.85243 3.23307 3.28473 3.36518 3.73158 4.27464 4.35814 4.48345 4.54008 4.65862 4.68084 4.76690 4.81166 4.86638 4.96225 5.04288 5.09258 5.14060 5.26086 5.39866 5.40937 5.44975 5.48377 5.57930 5.64837 5.68185 5.79233 5.82658 5.86353 5.96947 6.11670 6.21994 6.42498 6.50164 6.56640 7.26683 7.36611 7.80066 7.91876 8.00040 8.31925 9.08799 9.80638 9.98232 11.32711 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.002570 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.187399 B =10894.201186 C =12252.749724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.133 3.867 11 C 0.126 3.874 12 O -0.557 6.557 13 C -0.116 4.116 14 C 0.118 3.882 15 N -0.605 5.605 16 C 0.518 3.482 17 O -0.546 6.546 18 C -0.135 4.135 19 C -0.028 4.028 20 C 0.054 3.946 21 N -0.472 5.472 22 C 0.040 3.960 23 C -0.262 4.262 24 S 0.119 5.881 25 C 0.110 3.890 26 C -0.161 4.161 27 H 0.260 0.740 28 H 0.356 0.644 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.377 0.623 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.270 0.130 9.161 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.400 5.400 10 C 0.006 3.994 11 C 0.085 3.915 12 O -0.364 6.364 13 C -0.155 4.155 14 C -0.004 4.004 15 N -0.339 5.339 16 C 0.306 3.694 17 O -0.424 6.424 18 C -0.177 4.177 19 C -0.070 4.070 20 C -0.224 4.224 21 N -0.186 5.186 22 C -0.111 4.111 23 C -0.402 4.402 24 S 0.373 5.627 25 C -0.013 4.013 26 C -0.200 4.200 27 H 0.071 0.929 28 H 0.190 0.810 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.225 0.775 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.992 -1.046 8.327 28.267 hybrid contribution -0.468 2.065 1.208 2.438 sum 26.524 1.019 9.535 28.204 Atomic orbital electron populations 1.69697 1.05112 1.25905 1.57184 1.24696 0.95257 0.97200 1.01912 0.86572 0.79047 0.85100 0.77801 1.20879 1.21595 1.20570 1.19028 0.80374 0.94824 1.43366 0.89144 1.42641 1.04204 1.01742 1.91369 1.21297 0.88667 0.89826 0.99620 1.21382 0.94479 0.91324 0.84337 1.86420 1.70690 1.35415 1.43871 1.21846 0.94331 0.95757 1.03555 1.21544 0.95260 0.94787 0.88847 1.48122 1.35754 1.21732 1.28246 1.20423 0.79423 0.86790 0.82726 1.90691 1.51737 1.25442 1.74549 1.21677 1.00507 0.99479 0.96000 1.20003 0.99274 0.96781 0.90897 1.27149 0.97620 1.00494 0.97139 1.66303 1.27222 1.24195 1.00923 1.21868 0.96368 0.92313 1.00543 1.27119 1.06472 1.08198 0.98363 1.84106 1.39037 1.28889 1.10668 1.21671 0.91820 0.85365 1.02434 1.22513 0.95104 1.02577 0.99783 0.92938 0.81043 0.94412 0.94763 0.77467 0.89694 0.90218 0.90571 0.89157 0.87979 0.88635 0.87753 0.88703 0.80639 0.80533 0.89981 0.90559 0.89659 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 20.87 27.74 -169.99 -4.71 16.15 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -5.96 6.52 56.52 0.37 -5.59 16 7 C -0.25 -6.72 10.47 -15.06 -0.16 -6.87 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -16.52 4.87 -59.91 -0.29 -16.81 16 10 C 0.13 2.42 5.40 -4.04 -0.02 2.40 16 11 C 0.13 1.78 0.71 -90.58 -0.06 1.72 16 12 O -0.56 -8.08 11.71 -35.23 -0.41 -8.50 16 13 C -0.12 -1.45 5.11 -26.61 -0.14 -1.58 16 14 C 0.12 1.40 6.20 -3.71 -0.02 1.38 16 15 N -0.61 -6.90 2.98 -173.03 -0.52 -7.42 16 16 C 0.52 6.03 7.70 -10.98 -0.08 5.95 16 17 O -0.55 -7.96 15.39 5.56 0.09 -7.87 16 18 C -0.14 -1.18 4.03 -27.88 -0.11 -1.29 16 19 C -0.03 -0.25 5.09 -27.88 -0.14 -0.39 16 20 C 0.05 0.49 6.64 -13.46 -0.09 0.40 16 21 N -0.47 -4.97 10.54 -11.86 -0.13 -5.09 16 22 C 0.04 0.33 11.35 -19.18 -0.22 0.11 16 23 C -0.26 -1.78 11.37 29.12 0.33 -1.45 16 24 S 0.12 0.86 23.18 -107.50 -2.49 -1.63 16 25 C 0.11 1.15 6.08 -3.93 -0.02 1.12 16 26 C -0.16 -2.07 4.91 -26.83 -0.13 -2.21 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.36 7.34 3.44 -40.82 -0.14 7.20 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.38 5.24 7.85 45.56 0.36 5.60 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.92 7.81 -51.93 -0.41 0.52 16 35 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 36 H 0.10 0.88 7.68 -51.93 -0.40 0.48 16 37 H 0.10 0.67 7.95 -51.93 -0.41 0.26 16 38 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 39 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 43 H 0.08 0.78 7.81 -51.93 -0.41 0.37 16 44 H 0.08 1.20 6.82 -51.93 -0.35 0.85 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -33.47 373.35 -8.86 -42.33 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.82 Total: 11.71 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.97 Total: -0.65 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.16 Total: -57.17 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.33 Total: -16.37 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.71 Total: 16.15 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.47 -8.86 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274580550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.495 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds