Wall clock time and date at job start Tue Mar 31 2020 23:08:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.34663 * 125.79947 * 2 1
4 4 H 0.97001 * 124.84905 * 359.97438 * 3 2 1
5 5 C 1.36445 * 110.29745 * 180.25267 * 3 2 1
6 6 C 1.34488 * 108.85633 * 359.61090 * 5 3 2
7 7 C 1.36771 * 125.80100 * 180.02562 * 2 1 3
8 8 C 1.47259 * 126.94500 * 359.94619 * 7 2 1
9 9 O 1.21634 * 119.99541 * 359.97438 * 8 7 2
10 10 N 1.34773 * 119.99997 * 179.97438 * 8 7 2
11 11 C 1.46498 * 119.99757 * 180.02562 * 10 8 7
12 12 H 1.08994 * 109.47547 * 324.99962 * 11 10 8
13 13 C 1.53004 * 109.47263 * 85.00251 * 11 10 8
14 14 C 1.53007 * 109.47143 * 205.00147 * 11 10 8
15 15 N 1.46494 * 109.46929 * 55.00002 * 14 11 10
16 16 C 1.46502 * 119.99893 * 270.00227 * 15 14 11
17 17 C 1.34772 * 120.00463 * 90.00184 * 15 14 11
18 18 O 1.21283 * 119.99682 * 359.97438 * 17 15 14
19 19 C 1.50697 * 120.00721 * 179.97438 * 17 15 14
20 20 S 1.80997 * 109.47416 * 179.97438 * 19 17 15
21 21 C 1.76208 * 99.99791 * 180.02562 * 20 19 17
22 22 H 1.07993 * 119.99935 * 359.97438 * 21 20 19
23 23 C 1.38804 * 119.99577 * 180.02562 * 21 20 19
24 24 N 1.31628 * 119.99920 * 359.97438 * 23 21 20
25 25 Si 1.86801 * 119.99736 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.46949 * 89.99738 * 25 23 21
27 27 H 1.48492 * 109.47145 * 210.00014 * 25 23 21
28 28 H 1.48502 * 109.46955 * 329.99931 * 25 23 21
29 29 H 1.08996 * 109.47155 * 89.97949 * 1 2 3
30 30 H 1.08999 * 109.46974 * 209.98010 * 1 2 3
31 31 H 1.09003 * 109.46760 * 329.97785 * 1 2 3
32 32 H 1.07993 * 125.57511 * 179.76775 * 5 3 2
33 33 H 1.07998 * 126.83599 * 180.13883 * 6 5 3
34 34 H 0.96994 * 119.99971 * 0.02562 * 10 8 7
35 35 H 1.08996 * 109.47167 * 59.99961 * 13 11 10
36 36 H 1.09002 * 109.47033 * 179.97438 * 13 11 10
37 37 H 1.08993 * 109.46755 * 299.99792 * 13 11 10
38 38 H 1.09001 * 109.47044 * 175.00078 * 14 11 10
39 39 H 1.09003 * 109.47020 * 295.00034 * 14 11 10
40 40 H 1.08994 * 109.47642 * 90.00330 * 16 15 14
41 41 H 1.09011 * 109.47282 * 210.00189 * 16 15 14
42 42 H 1.09002 * 109.47437 * 329.99755 * 16 15 14
43 43 H 1.09000 * 109.47271 * 300.00471 * 19 17 15
44 44 H 1.09004 * 109.47069 * 59.99971 * 19 17 15
45 45 H 0.97003 * 119.99514 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2948 1.0922 0.0000
4 1 1.9733 2.0074 -0.0004
5 6 3.6096 0.7275 -0.0056
6 6 3.6883 -0.6150 -0.0007
7 6 2.3071 -1.1093 -0.0005
8 6 1.8703 -2.5156 0.0000
9 8 0.6839 -2.7839 0.0014
10 7 2.7851 -3.5053 -0.0011
11 6 2.3505 -4.9044 -0.0012
12 1 1.4394 -5.0019 0.5889
13 6 2.0780 -5.3537 -1.4382
14 6 3.4483 -5.7795 0.6072
15 7 3.7930 -5.2750 1.9386
16 6 4.8492 -4.2712 2.0907
17 6 3.1387 -5.7343 3.0236
18 8 2.2640 -6.5650 2.8977
19 6 3.4937 -5.2158 4.3933
20 16 2.4464 -6.0182 5.6324
21 6 3.0575 -5.2479 7.0947
22 1 3.8518 -4.5191 7.0295
23 6 2.5188 -5.5787 8.3303
24 7 1.5511 -6.4675 8.4097
25 14 3.1661 -4.7616 9.8804
26 1 2.3884 -3.5257 10.1502
27 1 3.0263 -5.6947 11.0271
28 1 4.5983 -4.4150 9.6961
29 1 -0.3633 0.0004 -1.0276
30 1 -0.3633 -0.8902 0.5135
31 1 -0.3633 0.8898 0.5142
32 1 4.4497 1.4060 -0.0105
33 1 4.5891 -1.2108 -0.0011
34 1 3.7311 -3.2913 -0.0019
35 1 2.9891 -5.2563 -2.0283
36 1 1.7551 -6.3948 -1.4383
37 1 1.2960 -4.7303 -1.8716
38 1 3.0911 -6.8061 0.6889
39 1 4.3310 -5.7517 -0.0317
40 1 4.4147 -3.2737 2.0253
41 1 5.3309 -4.3946 3.0608
42 1 5.5880 -4.3983 1.2995
43 1 4.5403 -5.4348 4.6048
44 1 3.3343 -4.1380 4.4264
45 1 1.1743 -6.6984 9.2733
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001280980701.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:08:45
Heat of formation + Delta-G solvation = -30.247378 kcal
Electronic energy + Delta-G solvation = -27172.976673 eV
Core-core repulsion = 23317.508134 eV
Total energy + Delta-G solvation = -3855.468539 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.45009 -39.84944 -38.81304 -36.22188 -34.34648 -32.39462 -32.14029 -31.69515
-30.56408 -29.35270 -27.21586 -26.58559 -25.63151 -25.16415 -23.28225 -21.31482
-20.68707 -19.73181 -19.15411 -17.92931 -17.64445 -16.65302 -16.28698 -16.13179
-15.69257 -15.22103 -15.08557 -14.77533 -14.36803 -14.07619 -13.92642 -13.66867
-13.41318 -13.29656 -13.16019 -12.91152 -12.82789 -12.74528 -12.71185 -12.55542
-12.26139 -12.06169 -11.91935 -11.77136 -11.69357 -11.08768 -11.03972 -10.98941
-10.73218 -9.77984 -9.75723 -9.34654 -9.17240 -9.03346 -8.99514 -8.47762
-8.36569 -8.17849 -6.45481 -6.18101 -3.88134 1.63376 2.19217 2.83561
2.96068 3.10846 3.24357 3.27362 3.31927 3.41296 3.57295 3.65645
4.23510 4.59848 4.71157 4.75998 4.81282 4.98571 5.03145 5.06282
5.16415 5.16893 5.26682 5.31867 5.39777 5.43983 5.46415 5.58971
5.60005 5.63347 5.71043 5.75657 5.77187 5.95057 5.99297 6.07499
6.15602 6.17760 6.50228 6.57573 6.67212 6.69918 7.17173 7.54279
7.62771 7.63075 8.38494 8.41448 8.60286 9.26987 10.89346
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.010815 B = 0.003016 C = 0.002635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2588.445318 B = 9283.088590 C =10625.470200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.097 4.097
2 C 0.107 3.893
3 N -0.554 5.554
4 H 0.415 0.585
5 C -0.017 4.017
6 C -0.169 4.169
7 C -0.235 4.235
8 C 0.591 3.409
9 O -0.547 6.547
10 N -0.717 5.717
11 C 0.125 3.875
12 H 0.096 0.904
13 C -0.158 4.158
14 C 0.111 3.889
15 N -0.622 5.622
16 C 0.077 3.923
17 C 0.534 3.466
18 O -0.513 6.513
19 C -0.149 4.149
20 S -0.061 6.061
21 C -0.534 4.534
22 H 0.072 0.928
23 C 0.074 3.926
24 N -0.867 5.867
25 Si 0.918 3.082
26 H -0.277 1.277
27 H -0.282 1.282
28 H -0.272 1.272
29 H 0.076 0.924
30 H 0.104 0.896
31 H 0.063 0.937
32 H 0.169 0.831
33 H 0.143 0.857
34 H 0.395 0.605
35 H 0.055 0.945
36 H 0.067 0.933
37 H 0.063 0.937
38 H 0.099 0.901
39 H 0.078 0.922
40 H 0.055 0.945
41 H 0.076 0.924
42 H 0.067 0.933
43 H 0.088 0.912
44 H 0.088 0.912
45 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.746 14.602 -22.231 27.702
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.011 4.011
3 N -0.150 5.150
4 H 0.252 0.748
5 C -0.145 4.145
6 C -0.193 4.193
7 C -0.245 4.245
8 C 0.380 3.620
9 O -0.426 6.426
10 N -0.368 5.368
11 C 0.019 3.981
12 H 0.114 0.886
13 C -0.217 4.217
14 C -0.013 4.013
15 N -0.358 5.358
16 C -0.066 4.066
17 C 0.322 3.678
18 O -0.387 6.387
19 C -0.300 4.300
20 S 0.166 5.834
21 C -0.683 4.683
22 H 0.090 0.910
23 C -0.136 4.136
24 N -0.503 5.503
25 Si 0.744 3.256
26 H -0.203 1.203
27 H -0.208 1.208
28 H -0.197 1.197
29 H 0.095 0.905
30 H 0.122 0.878
31 H 0.082 0.918
32 H 0.186 0.814
33 H 0.161 0.839
34 H 0.229 0.771
35 H 0.074 0.926
36 H 0.086 0.914
37 H 0.082 0.918
38 H 0.117 0.883
39 H 0.096 0.904
40 H 0.073 0.927
41 H 0.095 0.905
42 H 0.086 0.914
43 H 0.107 0.893
44 H 0.106 0.894
45 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 5.476 13.169 -22.279 26.453
hybrid contribution 2.047 2.228 1.158 3.240
sum 7.523 15.397 -21.121 27.199
Atomic orbital electron populations
1.20601 0.86951 1.04511 1.03370 1.20381 0.93802 0.85625 1.01276
1.41610 1.06288 1.08435 1.58633 0.74823 1.21703 0.85677 0.96461
1.10625 1.21989 0.95679 0.93679 1.07976 1.20153 0.93204 0.92142
1.18974 1.17321 0.85373 0.84018 0.75258 1.90751 1.16647 1.84338
1.50879 1.45777 1.09383 1.05651 1.76037 1.21430 0.99517 0.80228
0.96893 0.88610 1.22100 1.01927 1.01939 0.95752 1.21752 0.97444
0.99058 0.83018 1.47767 1.38426 1.43440 1.06124 1.21843 0.90004
0.91639 1.03136 1.20328 0.80946 0.81002 0.85509 1.90698 1.30199
1.31829 1.85964 1.23541 1.05617 1.04649 0.96146 1.85409 1.46957
1.54905 0.96147 1.22857 1.24247 1.28624 0.92535 0.91011 1.24986
0.94782 0.95075 0.98725 1.70023 1.24197 1.30429 1.25601 0.86180
0.79131 0.79030 0.81229 1.20300 1.20761 1.19712 0.90508 0.87772
0.91828 0.81424 0.83921 0.77102 0.92636 0.91361 0.91833 0.88303
0.90402 0.92690 0.90523 0.91420 0.89336 0.89398 0.92215
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.93 9.88 36.01 0.36 -0.57 16
2 C 0.11 1.11 7.17 -81.88 -0.59 0.53 16
3 N -0.55 -4.01 5.90 -9.11 -0.05 -4.06 16
4 H 0.42 1.66 8.96 -40.82 -0.37 1.30 16
5 C -0.02 -0.12 11.89 -16.82 -0.20 -0.32 16
6 C -0.17 -1.49 10.56 -37.49 -0.40 -1.88 16
7 C -0.23 -2.78 6.29 -103.35 -0.65 -3.43 16
8 C 0.59 8.30 7.77 -12.60 -0.10 8.21 16
9 O -0.55 -9.55 14.47 5.25 0.08 -9.48 16
10 N -0.72 -8.22 4.35 -54.93 -0.24 -8.46 16
11 C 0.13 1.56 2.88 -67.93 -0.20 1.36 16
12 H 0.10 1.62 7.58 -51.93 -0.39 1.22 16
13 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16
14 C 0.11 1.28 5.07 -4.04 -0.02 1.26 16
15 N -0.62 -8.59 2.73 -181.57 -0.50 -9.08 16
16 C 0.08 0.77 9.02 59.85 0.54 1.31 16
17 C 0.53 10.36 7.69 -10.99 -0.08 10.28 16
18 O -0.51 -11.92 15.44 5.55 0.09 -11.84 16
19 C -0.15 -3.12 4.71 36.00 0.17 -2.95 16
20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16
21 C -0.53 -15.47 9.50 30.94 0.29 -15.17 16
22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16
23 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16
24 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16
25 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16
26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.10 1.30 6.46 -51.93 -0.34 0.97 16
31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
32 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16
33 H 0.14 0.92 7.70 -52.49 -0.40 0.51 16
34 H 0.39 3.47 6.19 -40.82 -0.25 3.22 16
35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
38 H 0.10 1.28 7.42 -51.93 -0.39 0.90 16
39 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16
40 H 0.05 0.53 7.39 -51.93 -0.38 0.14 16
41 H 0.08 0.79 6.44 -51.92 -0.33 0.46 16
42 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16
43 H 0.09 1.69 7.40 -51.92 -0.38 1.31 16
44 H 0.09 1.76 8.11 -51.91 -0.42 1.34 16
45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16
LS Contribution 389.29 15.07 5.87 5.87
Total: -1.00 -38.77 389.29 -8.44 -47.21
By element:
Atomic # 1 Polarization: 10.11 SS G_CDS: -6.56 Total: 3.55 kcal
Atomic # 6 Polarization: 0.00 SS G_CDS: -0.62 Total: -0.62 kcal
Atomic # 7 Polarization: -47.35 SS G_CDS: -0.05 Total: -47.41 kcal
Atomic # 8 Polarization: -21.48 SS G_CDS: 0.16 Total: -21.32 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -38.77 -8.44 -47.21 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001280980701.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.963 kcal
(2) G-P(sol) polarization free energy of solvation -38.771 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.808 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.211 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds