Wall clock time and date at job start Tue Mar 31 2020 23:08:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.34663 * 125.79947 * 2 1
4 4 H 0.97001 * 124.84905 * 359.97438 * 3 2 1
5 5 C 1.36445 * 110.29745 * 180.25267 * 3 2 1
6 6 C 1.34488 * 108.85633 * 359.61090 * 5 3 2
7 7 C 1.36771 * 125.80100 * 180.02562 * 2 1 3
8 8 C 1.47259 * 126.94500 * 359.94619 * 7 2 1
9 9 O 1.21634 * 119.99541 * 359.97438 * 8 7 2
10 10 N 1.34773 * 119.99997 * 179.97438 * 8 7 2
11 11 C 1.46498 * 119.99757 * 180.02562 * 10 8 7
12 12 H 1.08994 * 109.47547 * 324.99962 * 11 10 8
13 13 C 1.53004 * 109.47263 * 85.00251 * 11 10 8
14 14 C 1.53007 * 109.47143 * 205.00147 * 11 10 8
15 15 N 1.46494 * 109.46929 * 55.00002 * 14 11 10
16 16 C 1.46502 * 119.99893 * 270.00227 * 15 14 11
17 17 C 1.34772 * 120.00463 * 90.00184 * 15 14 11
18 18 O 1.21283 * 119.99682 * 359.97438 * 17 15 14
19 19 C 1.50697 * 120.00721 * 179.97438 * 17 15 14
20 20 S 1.80997 * 109.47416 * 179.97438 * 19 17 15
21 21 C 1.76208 * 99.99791 * 180.02562 * 20 19 17
22 22 H 1.07993 * 119.99935 * 359.97438 * 21 20 19
23 23 C 1.38804 * 119.99577 * 180.02562 * 21 20 19
24 24 N 1.31628 * 119.99920 * 359.97438 * 23 21 20
25 25 Si 1.86801 * 119.99736 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.46949 * 89.99738 * 25 23 21
27 27 H 1.48492 * 109.47145 * 210.00014 * 25 23 21
28 28 H 1.48502 * 109.46955 * 329.99931 * 25 23 21
29 29 H 1.08996 * 109.47155 * 89.97949 * 1 2 3
30 30 H 1.08999 * 109.46974 * 209.98010 * 1 2 3
31 31 H 1.09003 * 109.46760 * 329.97785 * 1 2 3
32 32 H 1.07993 * 125.57511 * 179.76775 * 5 3 2
33 33 H 1.07998 * 126.83599 * 180.13883 * 6 5 3
34 34 H 0.96994 * 119.99971 * 0.02562 * 10 8 7
35 35 H 1.08996 * 109.47167 * 59.99961 * 13 11 10
36 36 H 1.09002 * 109.47033 * 179.97438 * 13 11 10
37 37 H 1.08993 * 109.46755 * 299.99792 * 13 11 10
38 38 H 1.09001 * 109.47044 * 175.00078 * 14 11 10
39 39 H 1.09003 * 109.47020 * 295.00034 * 14 11 10
40 40 H 1.08994 * 109.47642 * 90.00330 * 16 15 14
41 41 H 1.09011 * 109.47282 * 210.00189 * 16 15 14
42 42 H 1.09002 * 109.47437 * 329.99755 * 16 15 14
43 43 H 1.09000 * 109.47271 * 300.00471 * 19 17 15
44 44 H 1.09004 * 109.47069 * 59.99971 * 19 17 15
45 45 H 0.97003 * 119.99514 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2948 1.0922 0.0000
4 1 1.9733 2.0074 -0.0004
5 6 3.6096 0.7275 -0.0056
6 6 3.6883 -0.6150 -0.0007
7 6 2.3071 -1.1093 -0.0005
8 6 1.8703 -2.5156 0.0000
9 8 0.6839 -2.7839 0.0014
10 7 2.7851 -3.5053 -0.0011
11 6 2.3505 -4.9044 -0.0012
12 1 1.4394 -5.0019 0.5889
13 6 2.0780 -5.3537 -1.4382
14 6 3.4483 -5.7795 0.6072
15 7 3.7930 -5.2750 1.9386
16 6 4.8492 -4.2712 2.0907
17 6 3.1387 -5.7343 3.0236
18 8 2.2640 -6.5650 2.8977
19 6 3.4937 -5.2158 4.3933
20 16 2.4464 -6.0182 5.6324
21 6 3.0575 -5.2479 7.0947
22 1 3.8518 -4.5191 7.0295
23 6 2.5188 -5.5787 8.3303
24 7 1.5511 -6.4675 8.4097
25 14 3.1661 -4.7616 9.8804
26 1 2.3884 -3.5257 10.1502
27 1 3.0263 -5.6947 11.0271
28 1 4.5983 -4.4150 9.6961
29 1 -0.3633 0.0004 -1.0276
30 1 -0.3633 -0.8902 0.5135
31 1 -0.3633 0.8898 0.5142
32 1 4.4497 1.4060 -0.0105
33 1 4.5891 -1.2108 -0.0011
34 1 3.7311 -3.2913 -0.0019
35 1 2.9891 -5.2563 -2.0283
36 1 1.7551 -6.3948 -1.4383
37 1 1.2960 -4.7303 -1.8716
38 1 3.0911 -6.8061 0.6889
39 1 4.3310 -5.7517 -0.0317
40 1 4.4147 -3.2737 2.0253
41 1 5.3309 -4.3946 3.0608
42 1 5.5880 -4.3983 1.2995
43 1 4.5403 -5.4348 4.6048
44 1 3.3343 -4.1380 4.4264
45 1 1.1743 -6.6984 9.2733
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001280980701.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:08:44
Heat of formation + Delta-G solvation = -58.686316 kcal
Electronic energy + Delta-G solvation = -27174.209878 eV
Core-core repulsion = 23317.508134 eV
Total energy + Delta-G solvation = -3856.701744 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.14084 -41.07856 -39.99704 -37.45343 -35.53714 -34.59200 -33.04437 -32.42922
-31.47080 -30.74299 -28.19486 -27.70465 -27.31041 -26.41945 -24.19781 -22.20208
-21.43348 -20.84628 -20.41849 -19.54971 -18.59420 -18.07908 -17.33155 -17.24004
-16.90069 -16.85584 -16.36365 -16.11187 -15.82032 -15.27970 -14.89347 -14.64652
-14.56368 -14.49094 -14.35705 -13.99418 -13.82731 -13.62516 -13.57872 -13.48746
-13.43288 -13.22531 -13.16151 -12.92090 -12.87566 -12.80966 -12.57007 -12.47329
-12.06567 -11.72181 -11.14932 -10.90770 -10.85053 -10.27636 -10.20651 -9.73978
-9.58462 -9.07567 -8.68432 -8.34933 -6.13796 0.77908 1.25249 1.42052
1.45398 1.55744 1.58526 1.60232 2.07097 2.20907 2.27296 2.59631
2.62915 2.99026 3.26552 3.70975 3.78008 3.93276 4.09986 4.11355
4.19674 4.26652 4.29061 4.36905 4.38855 4.46348 4.57488 4.66054
4.67411 4.70149 4.74427 4.80903 4.94554 4.99099 5.03899 5.08454
5.24045 5.30850 5.40434 5.57337 5.62113 5.84297 6.01614 6.18898
6.26028 6.63965 6.76671 7.05717 7.15626 7.43663 8.74526
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.010815 B = 0.003016 C = 0.002635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2588.445318 B = 9283.088590 C =10625.470200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.094 4.094
2 C 0.090 3.910
3 N -0.540 5.540
4 H 0.431 0.569
5 C -0.003 4.003
6 C -0.182 4.182
7 C -0.269 4.269
8 C 0.580 3.420
9 O -0.597 6.597
10 N -0.702 5.702
11 C 0.130 3.870
12 H 0.039 0.961
13 C -0.149 4.149
14 C 0.113 3.887
15 N -0.606 5.606
16 C 0.065 3.935
17 C 0.528 3.472
18 O -0.565 6.565
19 C -0.121 4.121
20 S -0.157 6.157
21 C -0.545 4.545
22 H 0.083 0.917
23 C 0.012 3.988
24 N -0.912 5.912
25 Si 1.000 3.000
26 H -0.269 1.269
27 H -0.277 1.277
28 H -0.255 1.255
29 H 0.082 0.918
30 H 0.067 0.933
31 H 0.087 0.913
32 H 0.208 0.792
33 H 0.167 0.833
34 H 0.411 0.589
35 H 0.088 0.912
36 H 0.072 0.928
37 H 0.042 0.958
38 H 0.082 0.918
39 H 0.133 0.867
40 H 0.061 0.939
41 H 0.075 0.925
42 H 0.117 0.883
43 H 0.112 0.888
44 H 0.098 0.902
45 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.852 17.504 -23.201 31.387
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.029 4.029
3 N -0.137 5.137
4 H 0.271 0.729
5 C -0.131 4.131
6 C -0.205 4.205
7 C -0.279 4.279
8 C 0.371 3.629
9 O -0.480 6.480
10 N -0.354 5.354
11 C 0.023 3.977
12 H 0.057 0.943
13 C -0.208 4.208
14 C -0.010 4.010
15 N -0.339 5.339
16 C -0.077 4.077
17 C 0.316 3.684
18 O -0.444 6.444
19 C -0.272 4.272
20 S 0.070 5.930
21 C -0.693 4.693
22 H 0.101 0.899
23 C -0.192 4.192
24 N -0.549 5.549
25 Si 0.822 3.178
26 H -0.194 1.194
27 H -0.202 1.202
28 H -0.179 1.179
29 H 0.100 0.900
30 H 0.086 0.914
31 H 0.106 0.894
32 H 0.225 0.775
33 H 0.185 0.815
34 H 0.249 0.751
35 H 0.107 0.893
36 H 0.091 0.909
37 H 0.061 0.939
38 H 0.100 0.900
39 H 0.151 0.849
40 H 0.080 0.920
41 H 0.094 0.906
42 H 0.135 0.865
43 H 0.130 0.870
44 H 0.116 0.884
45 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 9.663 16.126 -23.297 29.936
hybrid contribution 0.812 1.405 1.314 2.088
sum 10.475 17.531 -21.982 30.004
Atomic orbital electron populations
1.20499 0.87285 1.03810 1.03524 1.20450 0.94100 0.86582 1.01784
1.41630 1.06268 1.08549 1.57256 0.72906 1.22370 0.86175 0.96599
1.07951 1.22308 0.94860 0.94708 1.08617 1.20247 0.95500 0.91046
1.21129 1.17858 0.84983 0.85509 0.74553 1.90725 1.18799 1.85204
1.53272 1.45607 1.09947 1.04739 1.75146 1.21249 0.97684 0.81194
0.97537 0.94290 1.22012 1.02818 1.01632 0.94294 1.21955 0.99159
0.97703 0.82207 1.47752 1.37787 1.42966 1.05421 1.22233 0.89682
0.90592 1.05152 1.20161 0.81019 0.80907 0.86349 1.90681 1.32637
1.34390 1.86645 1.23346 1.04846 1.04101 0.94915 1.85626 1.50477
1.57239 0.99637 1.23185 1.24537 1.28804 0.92765 0.89920 1.26167
0.94785 0.95531 1.02743 1.70198 1.25797 1.32175 1.26680 0.84931
0.79164 0.77837 0.75905 1.19433 1.20187 1.17886 0.89989 0.91449
0.89436 0.77495 0.81536 0.75117 0.89301 0.90877 0.93927 0.89967
0.84928 0.92003 0.90634 0.86485 0.87023 0.88413 0.92000
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.87 9.88 71.24 0.70 -1.17 16
2 C 0.09 1.82 7.17 41.78 0.30 2.12 16
3 N -0.54 -6.39 5.90 -182.72 -1.08 -7.47 16
4 H 0.43 2.15 8.96 -92.71 -0.83 1.32 16
5 C 0.00 -0.03 11.89 83.12 0.99 0.95 16
6 C -0.18 -2.62 10.56 23.62 0.25 -2.37 16
7 C -0.27 -6.18 6.29 -19.04 -0.12 -6.30 16
8 C 0.58 16.80 7.77 86.62 0.67 17.47 16
9 O -0.60 -22.71 14.47 -4.14 -0.06 -22.77 16
10 N -0.70 -15.52 4.35 -445.95 -1.94 -17.46 16
11 C 0.13 3.25 2.88 45.00 0.13 3.38 16
12 H 0.04 1.44 7.58 -2.39 -0.02 1.42 16
13 C -0.15 -2.96 9.48 71.98 0.68 -2.28 16
14 C 0.11 2.40 5.07 86.38 0.44 2.84 16
15 N -0.61 -15.77 2.73 -846.75 -2.31 -18.08 16
16 C 0.07 1.04 9.02 127.77 1.15 2.19 16
17 C 0.53 20.81 7.69 87.66 0.67 21.48 16
18 O -0.57 -27.75 15.44 -3.04 -0.05 -27.80 16
19 C -0.12 -5.08 4.71 71.23 0.34 -4.75 16
20 S -0.16 -9.10 20.57 -56.49 -1.16 -10.27 16
21 C -0.55 -31.95 9.50 67.96 0.65 -31.31 16
22 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16
23 C 0.01 0.72 5.49 84.86 0.47 1.18 16
24 N -0.91 -57.39 13.22 21.65 0.29 -57.10 16
25 Si 1.00 44.28 29.55 68.60 2.03 46.31 16
26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16
28 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16
29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
30 H 0.07 1.87 6.46 -2.39 -0.02 1.86 16
31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
32 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16
33 H 0.17 1.40 7.70 -2.91 -0.02 1.38 16
34 H 0.41 6.00 6.19 -92.71 -0.57 5.42 16
35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
37 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16
38 H 0.08 2.12 7.42 -2.39 -0.02 2.10 16
39 H 0.13 1.46 7.89 -2.39 -0.02 1.44 16
40 H 0.06 0.96 7.39 -2.39 -0.02 0.94 16
41 H 0.07 1.28 6.44 -2.38 -0.02 1.27 16
42 H 0.12 0.79 7.89 -2.39 -0.02 0.77 16
43 H 0.11 4.13 7.40 -2.39 -0.02 4.12 16
44 H 0.10 3.88 8.11 -2.39 -0.02 3.86 16
45 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16
Total: -1.00 -93.62 389.29 2.66 -90.96
By element:
Atomic # 1 Polarization: 20.61 SS G_CDS: -0.38 Total: 20.23 kcal
Atomic # 6 Polarization: -3.87 SS G_CDS: 7.32 Total: 3.45 kcal
Atomic # 7 Polarization: -95.06 SS G_CDS: -5.04 Total: -100.11 kcal
Atomic # 8 Polarization: -50.47 SS G_CDS: -0.11 Total: -50.57 kcal
Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal
Atomic # 16 Polarization: -9.10 SS G_CDS: -1.16 Total: -10.27 kcal
Total: -93.62 2.66 -90.96 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001280980701.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.276 kcal
(2) G-P(sol) polarization free energy of solvation -93.618 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.962 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.686 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds